Wall clock time and date at job start Mon Mar 30 2020 02:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.17001 * 304.28360 * 10 9 7 12 12 C 1.53710 * 109.17690 * 184.99529 * 10 9 7 13 13 N 1.45475 * 107.57889 * 295.55629 * 12 10 9 14 14 C 1.46168 * 117.90605 * 176.49185 * 13 12 10 15 15 C 1.54887 * 105.83923 * 152.31562 * 14 13 12 16 16 C 1.55398 * 104.97207 * 356.04749 * 15 14 13 17 17 C 1.48805 * 109.29811 * 296.74184 * 13 12 10 18 18 H 1.09003 * 111.09674 * 306.79190 * 17 13 12 19 19 C 1.52275 * 107.06757 * 68.03853 * 17 13 12 20 20 N 1.46605 * 109.17743 * 63.52219 * 10 9 7 21 21 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 22 22 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 23 23 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 24 24 H 1.08998 * 109.83450 * 55.08020 * 12 10 9 25 25 H 1.09002 * 109.83488 * 176.03667 * 12 10 9 26 26 H 1.08997 * 110.18279 * 271.40830 * 14 13 12 27 27 H 1.09008 * 110.17520 * 33.22791 * 14 13 12 28 28 H 1.09004 * 110.34124 * 237.17158 * 15 14 13 29 29 H 1.09004 * 110.42774 * 114.96868 * 15 14 13 30 30 H 1.09003 * 110.92960 * 219.54975 * 16 15 14 31 31 H 1.09004 * 110.92915 * 95.89354 * 16 15 14 32 32 H 1.08999 * 109.86541 * 56.95268 * 19 17 13 33 33 H 1.08999 * 109.86869 * 177.92317 * 19 17 13 34 34 H 1.00903 * 110.99660 * 190.80176 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 1 2.9188 -3.5615 -0.8329 12 6 1.4743 -4.9862 -0.1013 13 7 0.6551 -5.1270 1.0925 14 6 -0.2379 -6.2811 1.1773 15 6 -0.4069 -6.5747 2.6887 16 6 0.5357 -5.5657 3.4016 17 6 1.5381 -5.2222 2.2865 18 1 2.2826 -6.0086 2.1622 19 6 2.2053 -3.8642 2.4583 20 7 3.0277 -3.6204 1.2575 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6248 -2.5524 0.9029 23 1 0.6241 -2.5613 -0.8770 24 1 0.8382 -4.9652 -0.9862 25 1 2.1757 -5.8179 -0.1688 26 1 -1.2032 -6.0433 0.7304 27 1 0.2085 -7.1395 0.6752 28 1 -0.1049 -7.5981 2.9119 29 1 -1.4399 -6.4098 2.9951 30 1 1.0395 -6.0340 4.2472 31 1 -0.0122 -4.6786 3.7193 32 1 1.4461 -3.0876 2.5511 33 1 2.8376 -3.8718 3.3461 34 1 3.8056 -4.2617 1.2157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:18 Heat of formation + Delta-G solvation = 4.781699 kcal Electronic energy + Delta-G solvation = -14684.362151 eV Core-core repulsion = 12423.568054 eV Total energy + Delta-G solvation = -2260.794097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.78447 -35.74847 -32.83774 -32.08947 -29.65572 -28.03161 -26.10008 -23.37991 -22.69159 -20.94096 -20.67974 -18.84160 -16.43093 -15.88512 -15.50472 -15.18238 -14.04680 -13.70638 -13.56558 -13.48611 -12.89908 -12.37024 -12.13301 -11.74621 -11.36967 -11.26681 -10.94676 -10.89736 -10.62900 -10.52139 -10.37349 -10.08241 -9.93329 -9.42722 -8.33071 -8.15253 -8.05281 -7.43391 -6.09990 -3.74159 3.56802 3.60139 3.78179 4.18131 4.71034 4.72974 4.79866 5.02289 5.04502 5.31066 5.49362 5.59822 5.64438 5.67452 5.71583 5.79728 5.86651 5.95836 6.01868 6.12212 6.20227 6.27146 6.34781 6.69525 6.95145 7.23396 7.42669 7.58881 7.79830 7.91662 8.19031 8.54353 8.78870 9.16918 9.94455 11.30498 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046775 B = 0.008606 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.470391 B = 3252.931008 C = 3303.138954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 1.067 2.933 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.572 4.572 8 H 0.051 0.949 9 C 0.028 3.972 10 C 0.107 3.893 11 H 0.070 0.930 12 C 0.030 3.970 13 N -0.524 5.524 14 C 0.050 3.950 15 C -0.126 4.126 16 C -0.111 4.111 17 C 0.029 3.971 18 H 0.042 0.958 19 C 0.079 3.921 20 N -0.667 5.667 21 H 0.266 0.734 22 H 0.023 0.977 23 H 0.001 0.999 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.114 -12.995 4.756 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.195 4.195 3 Si 0.897 3.103 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.611 4.611 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.003 4.003 11 H 0.089 0.911 12 C -0.100 4.100 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.164 4.164 16 C -0.150 4.150 17 C -0.081 4.081 18 H 0.059 0.941 19 C -0.051 4.051 20 N -0.294 5.294 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.019 0.981 24 H 0.091 0.909 25 H 0.033 0.967 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.581 -10.210 4.751 11.372 hybrid contribution 0.508 -3.564 -0.291 3.612 sum 2.089 -13.774 4.461 14.628 Atomic orbital electron populations 1.70765 1.06865 1.30350 1.48308 1.25729 0.96614 1.02440 0.94755 0.83572 0.74772 0.75719 0.76249 1.21223 1.21707 1.21842 1.22028 0.94436 0.91583 1.53081 0.93086 1.19158 0.93475 0.91953 0.96327 1.21711 0.94900 0.93039 0.90671 0.91143 1.22895 0.95485 0.98774 0.92813 1.62631 1.19132 1.40275 1.02924 1.22496 0.97722 0.91335 0.96232 1.22628 1.00447 0.98674 0.94666 1.22297 0.96713 0.99412 0.96581 1.23417 0.94433 0.98872 0.91336 0.94053 1.21955 0.96644 0.93979 0.92475 1.60001 1.11121 1.56121 1.02127 0.92314 0.95846 0.98091 0.90851 0.96686 0.90734 0.95309 0.92055 0.91128 0.91521 0.90243 0.88870 0.91586 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.44 13.65 55.43 0.76 -28.68 16 2 C 0.01 0.19 5.46 -17.82 -0.10 0.09 16 3 Si 1.07 26.60 29.90 -169.99 -5.08 21.52 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.57 -16.76 8.79 -34.44 -0.30 -17.07 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.74 3.45 -27.88 -0.10 0.64 16 10 C 0.11 2.26 2.97 -67.50 -0.20 2.06 16 11 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 12 C 0.03 0.55 5.44 -4.22 -0.02 0.53 16 13 N -0.52 -9.17 4.05 -225.13 -0.91 -10.08 16 14 C 0.05 0.73 6.88 -3.23 -0.02 0.71 16 15 C -0.13 -1.54 6.99 -24.46 -0.17 -1.72 16 16 C -0.11 -1.48 6.63 -25.03 -0.17 -1.65 16 17 C 0.03 0.46 2.75 -66.60 -0.18 0.27 16 18 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 19 C 0.08 1.42 6.01 -3.83 -0.02 1.40 16 20 N -0.67 -13.08 6.21 -106.45 -0.66 -13.74 16 21 H 0.27 8.52 7.22 -40.82 -0.29 8.23 16 22 H 0.02 0.66 6.03 -51.92 -0.31 0.34 16 23 H 0.00 0.03 8.00 -51.93 -0.42 -0.39 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.02 0.25 8.08 -51.93 -0.42 -0.17 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.03 0.39 8.06 -51.92 -0.42 -0.03 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 32 H 0.09 2.02 6.63 -51.93 -0.34 1.68 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.32 5.33 8.90 -39.29 -0.35 4.98 16 LS Contribution 264.37 15.07 3.98 3.98 Total: -1.00 -31.94 264.37 -8.76 -40.70 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.56 Total: 1.02 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.29 Total: -14.72 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.82 Total: -52.50 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -5.08 Total: 21.52 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.94 -8.76 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.481 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds