Wall clock time and date at job start Mon Mar 30 2020 02:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.17001 * 304.28360 * 10 9 7 12 12 C 1.53710 * 109.17690 * 184.99529 * 10 9 7 13 13 N 1.45475 * 107.57889 * 295.55629 * 12 10 9 14 14 C 1.46168 * 117.90605 * 176.49185 * 13 12 10 15 15 C 1.54887 * 105.83923 * 152.31562 * 14 13 12 16 16 C 1.55398 * 104.97207 * 356.04749 * 15 14 13 17 17 C 1.48805 * 109.29811 * 296.74184 * 13 12 10 18 18 H 1.09003 * 111.09674 * 306.79190 * 17 13 12 19 19 C 1.52275 * 107.06757 * 68.03853 * 17 13 12 20 20 N 1.46605 * 109.17743 * 63.52219 * 10 9 7 21 21 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 22 22 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 23 23 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 24 24 H 1.08998 * 109.83450 * 55.08020 * 12 10 9 25 25 H 1.09002 * 109.83488 * 176.03667 * 12 10 9 26 26 H 1.08997 * 110.18279 * 271.40830 * 14 13 12 27 27 H 1.09008 * 110.17520 * 33.22791 * 14 13 12 28 28 H 1.09004 * 110.34124 * 237.17158 * 15 14 13 29 29 H 1.09004 * 110.42774 * 114.96868 * 15 14 13 30 30 H 1.09003 * 110.92960 * 219.54975 * 16 15 14 31 31 H 1.09004 * 110.92915 * 95.89354 * 16 15 14 32 32 H 1.08999 * 109.86541 * 56.95268 * 19 17 13 33 33 H 1.08999 * 109.86869 * 177.92317 * 19 17 13 34 34 H 1.00903 * 110.99660 * 190.80176 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 1 2.9188 -3.5615 -0.8329 12 6 1.4743 -4.9862 -0.1013 13 7 0.6551 -5.1270 1.0925 14 6 -0.2379 -6.2811 1.1773 15 6 -0.4069 -6.5747 2.6887 16 6 0.5357 -5.5657 3.4016 17 6 1.5381 -5.2222 2.2865 18 1 2.2826 -6.0086 2.1622 19 6 2.2053 -3.8642 2.4583 20 7 3.0277 -3.6204 1.2575 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6248 -2.5524 0.9029 23 1 0.6241 -2.5613 -0.8770 24 1 0.8382 -4.9652 -0.9862 25 1 2.1757 -5.8179 -0.1688 26 1 -1.2032 -6.0433 0.7304 27 1 0.2085 -7.1395 0.6752 28 1 -0.1049 -7.5981 2.9119 29 1 -1.4399 -6.4098 2.9951 30 1 1.0395 -6.0340 4.2472 31 1 -0.0122 -4.6786 3.7193 32 1 1.4461 -3.0876 2.5511 33 1 2.8376 -3.8718 3.3461 34 1 3.8056 -4.2617 1.2157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:18 Heat of formation + Delta-G solvation = -18.489534 kcal Electronic energy + Delta-G solvation = -14685.371268 eV Core-core repulsion = 12423.568054 eV Total energy + Delta-G solvation = -2261.803213 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13199 -37.26417 -34.97552 -33.49085 -31.17673 -29.52388 -27.84818 -25.06256 -24.54079 -22.34165 -21.79004 -20.47090 -18.64332 -17.35656 -16.77252 -16.49169 -15.63061 -15.40304 -15.30763 -14.88395 -14.63647 -13.76952 -13.54886 -13.22646 -13.16940 -12.92283 -12.49508 -12.40768 -12.06635 -12.03417 -11.89627 -11.68730 -11.53490 -11.33711 -10.54019 -10.41958 -9.46020 -8.89755 -8.52839 -6.17636 1.54322 1.64271 1.82869 2.64877 2.92305 3.26850 3.40440 3.60889 3.82577 3.94207 4.10200 4.15408 4.24726 4.36006 4.44305 4.54484 4.59077 4.70581 4.84517 4.89919 4.94130 5.05023 5.07442 5.20952 5.27231 5.35052 5.65161 5.99435 6.15648 6.27132 6.35592 6.39073 6.69557 6.82345 7.60564 8.87387 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.046775 B = 0.008606 C = 0.008475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.470391 B = 3252.931008 C = 3303.138954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.050 4.050 3 Si 1.117 2.883 4 H -0.287 1.287 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.580 4.580 8 H 0.049 0.951 9 C 0.038 3.962 10 C 0.114 3.886 11 H 0.066 0.934 12 C 0.041 3.959 13 N -0.557 5.557 14 C 0.047 3.953 15 C -0.118 4.118 16 C -0.109 4.109 17 C 0.036 3.964 18 H 0.060 0.940 19 C 0.082 3.918 20 N -0.683 5.683 21 H 0.250 0.750 22 H -0.001 1.001 23 H -0.028 1.028 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 -14.372 5.653 15.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.246 4.246 3 Si 0.939 3.061 4 H -0.213 1.213 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.618 4.618 8 H 0.067 0.933 9 C 0.001 3.999 10 C 0.003 3.997 11 H 0.084 0.916 12 C -0.089 4.089 13 N -0.283 5.283 14 C -0.081 4.081 15 C -0.156 4.156 16 C -0.147 4.147 17 C -0.074 4.074 18 H 0.078 0.922 19 C -0.048 4.048 20 N -0.312 5.312 21 H 0.059 0.941 22 H 0.017 0.983 23 H -0.010 1.010 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.000 -11.630 5.653 13.274 hybrid contribution 0.063 -3.151 -0.562 3.201 sum 3.064 -14.781 5.091 15.930 Atomic orbital electron populations 1.70912 1.07965 1.29359 1.50624 1.27315 0.96664 1.06696 0.93879 0.82932 0.73984 0.71427 0.77716 1.21321 1.19907 1.19593 1.22380 0.94473 0.92971 1.52009 0.93311 1.18954 0.93804 0.93518 0.93608 1.21404 0.94008 0.92707 0.91549 0.91570 1.22626 0.95586 0.97617 0.93056 1.62560 1.20058 1.42518 1.03137 1.22572 0.96666 0.90624 0.98211 1.22621 1.00699 0.99710 0.92524 1.22306 0.96350 0.99261 0.96822 1.23360 0.94929 0.97594 0.91479 0.92188 1.21862 0.95987 0.94144 0.92760 1.59826 1.11906 1.57645 1.01824 0.94066 0.98316 1.01002 0.91859 0.94147 0.91675 0.93921 0.89357 0.90502 0.88552 0.92185 0.93589 0.89000 0.84239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.25 13.65 21.45 0.29 -61.96 16 2 C -0.05 -3.08 5.46 84.65 0.46 -2.62 16 3 Si 1.12 53.53 29.90 68.60 2.05 55.58 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.58 -34.66 8.79 25.60 0.22 -34.43 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.10 3.45 29.85 0.10 2.21 16 10 C 0.11 4.84 2.97 45.21 0.13 4.97 16 11 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 12 C 0.04 1.47 5.44 86.81 0.47 1.94 16 13 N -0.56 -19.03 4.05 -866.19 -3.51 -22.54 16 14 C 0.05 1.27 6.88 87.09 0.60 1.87 16 15 C -0.12 -2.53 6.99 32.06 0.22 -2.31 16 16 C -0.11 -2.63 6.63 31.70 0.21 -2.42 16 17 C 0.04 1.04 2.75 44.58 0.12 1.17 16 18 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 19 C 0.08 2.89 6.01 85.94 0.52 3.40 16 20 N -0.68 -26.18 6.21 -490.69 -3.05 -29.22 16 21 H 0.25 16.79 7.22 -92.70 -0.67 16.12 16 22 H 0.00 -0.08 6.03 -2.38 -0.01 -0.10 16 23 H -0.03 -1.68 8.00 -2.39 -0.02 -1.70 16 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.04 1.24 8.08 -2.39 -0.02 1.22 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 27 H 0.04 1.04 8.06 -2.38 -0.02 1.02 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.68 8.11 -2.39 -0.02 1.66 16 32 H 0.05 2.06 6.63 -2.39 -0.02 2.04 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.34 10.62 8.90 -89.69 -0.80 9.83 16 Total: -1.00 -70.59 264.37 -0.77 -71.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.37 Total: 13.00 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 3.07 Total: -26.22 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -6.26 Total: -113.72 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.05 Total: 55.58 kcal Total: -70.59 -0.77 -71.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.870 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds