Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48500 * 109.46943 * 269.99665 * 3 2 1 5 5 H 1.48494 * 109.47379 * 29.99820 * 3 2 1 6 6 H 1.48499 * 109.47179 * 150.00325 * 3 2 1 7 7 C 1.37880 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46699 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.13780 * 54.26620 * 10 9 7 12 12 C 1.53718 * 109.17839 * 173.53879 * 10 9 7 13 13 N 1.45303 * 107.60836 * 64.43255 * 12 10 9 14 14 C 1.46161 * 118.03710 * 183.56586 * 13 12 10 15 15 C 1.54886 * 105.90207 * 207.63883 * 14 13 12 16 16 C 1.55402 * 104.97409 * 3.91878 * 15 14 13 17 17 C 1.48887 * 109.35797 * 63.23090 * 13 12 10 18 18 H 1.09002 * 111.64704 * 53.62006 * 17 13 12 19 19 C 1.52292 * 107.06126 * 292.03861 * 17 13 12 20 20 N 1.46603 * 109.18355 * 294.99623 * 10 9 7 21 21 H 0.97000 * 119.99970 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47367 * 60.00127 * 9 7 2 23 23 H 1.08995 * 109.47202 * 299.98966 * 9 7 2 24 24 H 1.09004 * 109.83675 * 183.94861 * 12 10 9 25 25 H 1.09000 * 109.83574 * 304.90877 * 12 10 9 26 26 H 1.09002 * 110.17801 * 88.50841 * 14 13 12 27 27 H 1.08996 * 110.17449 * 326.76984 * 14 13 12 28 28 H 1.09002 * 110.33830 * 122.79502 * 15 14 13 29 29 H 1.08998 * 110.34002 * 245.03976 * 15 14 13 30 30 H 1.09003 * 110.93009 * 140.44227 * 16 15 14 31 31 H 1.08999 * 110.92934 * 264.06695 * 16 15 14 32 32 H 1.09007 * 109.86146 * 181.92380 * 19 17 13 33 33 H 1.08996 * 109.86491 * 302.94772 * 19 17 13 34 34 H 1.00900 * 110.99556 * 59.65041 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9345 -3.5429 0.8364 12 6 1.4768 -4.9834 0.1639 13 7 0.6351 -5.1503 -1.0087 14 6 -0.2608 -6.3043 -1.0527 15 6 -0.4601 -6.6298 -2.5537 16 6 0.4688 -5.6373 -3.3067 17 6 1.4935 -5.2712 -2.2192 18 1 2.2400 -6.0573 -2.1058 19 6 2.1574 -3.9175 -2.4333 20 7 3.0030 -3.6480 -1.2544 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.1796 -5.8135 0.2356 25 1 0.8582 -4.9430 1.0604 26 1 -1.2168 -6.0559 -0.5916 27 1 0.1936 -7.1527 -0.5410 28 1 -0.1635 -7.6580 -2.7610 29 1 -1.4991 -6.4691 -2.8416 30 1 0.9553 -6.1241 -4.1519 31 1 -0.0848 -4.7568 -3.6328 32 1 2.7732 -3.9450 -3.3323 33 1 1.3966 -3.1427 -2.5282 34 1 3.5079 -2.7811 -1.3621 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = 3.252730 kcal Electronic energy + Delta-G solvation = -14646.678142 eV Core-core repulsion = 12385.817744 eV Total energy + Delta-G solvation = -2260.860398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50944 -35.67555 -32.61248 -31.98375 -29.75683 -27.97870 -26.36625 -23.26175 -22.84016 -20.81470 -20.58470 -18.25709 -16.35948 -15.69260 -15.28301 -14.64977 -14.45993 -14.15079 -13.50074 -13.24232 -12.55740 -12.23124 -12.06192 -11.95504 -11.29430 -11.20664 -10.99450 -10.73615 -10.51901 -10.51070 -10.37506 -10.05467 -9.88125 -9.60381 -8.91779 -8.32344 -7.79497 -7.33785 -5.95443 -3.98403 3.32570 3.39380 3.42271 4.39815 4.47779 4.81622 4.98913 5.17556 5.18845 5.40531 5.57352 5.71769 5.73376 5.88755 5.91044 5.97079 6.04578 6.16305 6.17636 6.23114 6.38301 6.44406 6.70455 6.74684 7.08796 7.38482 7.62474 7.76065 7.86664 8.03051 8.16144 8.32133 8.47584 9.10429 9.65042 11.15111 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.008536 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.209250 B = 3279.444447 C = 3331.628140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.004 3.996 10 C 0.093 3.907 11 H 0.069 0.931 12 C 0.073 3.927 13 N -0.530 5.530 14 C 0.052 3.948 15 C -0.125 4.125 16 C -0.115 4.115 17 C 0.072 3.928 18 H 0.051 0.949 19 C 0.071 3.929 20 N -0.691 5.691 21 H 0.259 0.741 22 H 0.033 0.967 23 H 0.012 0.988 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.176 -11.191 -4.585 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.034 4.034 10 C -0.017 4.017 11 H 0.087 0.913 12 C -0.055 4.055 13 N -0.255 5.255 14 C -0.077 4.077 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.037 4.037 18 H 0.069 0.931 19 C -0.059 4.059 20 N -0.323 5.323 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.031 0.969 24 H 0.040 0.960 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.906 -11.293 -4.462 12.176 hybrid contribution 0.357 1.128 0.158 1.194 sum 1.263 -10.165 -4.304 11.111 Atomic orbital electron populations 1.69987 1.06001 1.26342 1.50641 1.24996 0.94762 0.99031 0.95433 0.86669 0.79896 0.83860 0.77997 1.20801 1.21339 1.19935 1.21271 0.92735 0.91393 1.50785 0.92920 1.19617 0.94526 0.91023 0.98262 1.21670 0.94935 0.93968 0.91116 0.91305 1.22032 0.93861 0.97258 0.92379 1.62575 1.19410 1.40031 1.03477 1.22441 0.97597 0.91406 0.96210 1.22619 1.00297 0.98643 0.94748 1.22338 0.96899 0.99367 0.96803 1.22558 0.93402 0.97335 0.90360 0.93101 1.21753 0.95811 0.95349 0.92972 1.60417 1.29052 1.41070 1.01788 0.93157 0.94853 0.96930 0.95957 0.91115 0.90866 0.95227 0.92025 0.91272 0.91563 0.90502 0.91975 0.92770 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.60 8.46 -34.44 -0.29 -14.89 16 8 H 0.05 1.42 7.13 -52.49 -0.37 1.05 16 9 C 0.00 0.10 4.14 -27.88 -0.12 -0.01 16 10 C 0.09 1.99 3.04 -67.50 -0.21 1.78 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 12 C 0.07 1.38 5.44 -4.31 -0.02 1.36 16 13 N -0.53 -9.61 4.07 -225.19 -0.92 -10.53 16 14 C 0.05 0.77 6.88 -3.23 -0.02 0.75 16 15 C -0.12 -1.58 6.99 -24.46 -0.17 -1.75 16 16 C -0.12 -1.60 6.63 -25.02 -0.17 -1.76 16 17 C 0.07 1.19 2.75 -66.54 -0.18 1.01 16 18 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 19 C 0.07 1.31 6.01 -3.83 -0.02 1.29 16 20 N -0.69 -13.73 6.55 -106.44 -0.70 -14.43 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.03 0.95 6.14 -51.93 -0.32 0.63 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 32 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.05 1.17 6.60 -51.93 -0.34 0.83 16 34 H 0.35 7.16 7.58 -39.29 -0.30 6.86 16 LS Contribution 263.86 15.07 3.98 3.98 Total: -1.00 -29.96 263.86 -8.75 -38.71 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.53 Total: 2.50 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.30 Total: -10.64 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.88 Total: -51.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.96 -8.75 -38.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds