Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00071 * 2 1 4 4 H 1.48500 * 109.46943 * 269.99665 * 3 2 1 5 5 H 1.48494 * 109.47379 * 29.99820 * 3 2 1 6 6 H 1.48499 * 109.47179 * 150.00325 * 3 2 1 7 7 C 1.37880 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99949 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46699 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.13780 * 54.26620 * 10 9 7 12 12 C 1.53718 * 109.17839 * 173.53879 * 10 9 7 13 13 N 1.45303 * 107.60836 * 64.43255 * 12 10 9 14 14 C 1.46161 * 118.03710 * 183.56586 * 13 12 10 15 15 C 1.54886 * 105.90207 * 207.63883 * 14 13 12 16 16 C 1.55402 * 104.97409 * 3.91878 * 15 14 13 17 17 C 1.48887 * 109.35797 * 63.23090 * 13 12 10 18 18 H 1.09002 * 111.64704 * 53.62006 * 17 13 12 19 19 C 1.52292 * 107.06126 * 292.03861 * 17 13 12 20 20 N 1.46603 * 109.18355 * 294.99623 * 10 9 7 21 21 H 0.97000 * 119.99970 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47367 * 60.00127 * 9 7 2 23 23 H 1.08995 * 109.47202 * 299.98966 * 9 7 2 24 24 H 1.09004 * 109.83675 * 183.94861 * 12 10 9 25 25 H 1.09000 * 109.83574 * 304.90877 * 12 10 9 26 26 H 1.09002 * 110.17801 * 88.50841 * 14 13 12 27 27 H 1.08996 * 110.17449 * 326.76984 * 14 13 12 28 28 H 1.09002 * 110.33830 * 122.79502 * 15 14 13 29 29 H 1.08998 * 110.34002 * 245.03976 * 15 14 13 30 30 H 1.09003 * 110.93009 * 140.44227 * 16 15 14 31 31 H 1.08999 * 110.92934 * 264.06695 * 16 15 14 32 32 H 1.09007 * 109.86146 * 181.92380 * 19 17 13 33 33 H 1.08996 * 109.86491 * 302.94772 * 19 17 13 34 34 H 1.00900 * 110.99556 * 59.65041 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9345 -3.5429 0.8364 12 6 1.4768 -4.9834 0.1639 13 7 0.6351 -5.1503 -1.0087 14 6 -0.2608 -6.3043 -1.0527 15 6 -0.4601 -6.6298 -2.5537 16 6 0.4688 -5.6373 -3.3067 17 6 1.4935 -5.2712 -2.2192 18 1 2.2400 -6.0573 -2.1058 19 6 2.1574 -3.9175 -2.4333 20 7 3.0030 -3.6480 -1.2544 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.1796 -5.8135 0.2356 25 1 0.8582 -4.9430 1.0604 26 1 -1.2168 -6.0559 -0.5916 27 1 0.1936 -7.1527 -0.5410 28 1 -0.1635 -7.6580 -2.7610 29 1 -1.4991 -6.4691 -2.8416 30 1 0.9553 -6.1241 -4.1519 31 1 -0.0848 -4.7568 -3.6328 32 1 2.7732 -3.9450 -3.3323 33 1 1.3966 -3.1427 -2.5282 34 1 3.5079 -2.7811 -1.3621 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791545.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = -18.126950 kcal Electronic energy + Delta-G solvation = -14647.605235 eV Core-core repulsion = 12385.817744 eV Total energy + Delta-G solvation = -2261.787491 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90680 -37.23810 -34.70931 -33.41037 -31.33018 -29.50070 -28.12021 -24.93385 -24.58863 -22.31789 -21.72921 -19.84338 -18.48072 -17.24068 -16.69559 -16.40018 -15.91535 -15.70693 -15.08253 -14.76508 -14.12269 -13.99073 -13.72758 -13.31445 -13.02362 -12.94059 -12.50811 -12.37313 -12.13394 -11.93865 -11.77427 -11.57908 -11.49809 -11.38441 -10.95530 -10.54833 -9.23657 -8.97887 -8.16986 -6.28099 1.38823 1.39737 1.50731 2.40572 3.09734 3.14900 3.44381 3.73459 3.88544 4.08990 4.27998 4.33845 4.45933 4.46212 4.54410 4.68866 4.79953 4.83122 4.97988 4.99606 5.02842 5.07192 5.22101 5.32709 5.37541 5.44882 5.68111 5.93151 6.10660 6.22789 6.36040 6.43472 6.65167 6.90826 7.40473 8.94245 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.008536 C = 0.008402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.209250 B = 3279.444447 C = 3331.628140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.020 3.980 10 C 0.099 3.901 11 H 0.066 0.934 12 C 0.080 3.920 13 N -0.560 5.560 14 C 0.047 3.953 15 C -0.116 4.116 16 C -0.111 4.111 17 C 0.074 3.926 18 H 0.061 0.939 19 C 0.071 3.929 20 N -0.681 5.681 21 H 0.260 0.740 22 H 0.003 0.997 23 H -0.024 1.024 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -12.207 -5.507 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.079 0.921 9 C -0.019 4.019 10 C -0.011 4.011 11 H 0.085 0.915 12 C -0.048 4.048 13 N -0.286 5.286 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.034 4.034 18 H 0.079 0.921 19 C -0.058 4.058 20 N -0.312 5.312 21 H 0.069 0.931 22 H 0.021 0.979 23 H -0.006 1.006 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.032 0.968 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.077 -12.332 -5.391 13.618 hybrid contribution -0.032 1.434 0.442 1.501 sum 2.045 -10.897 -4.948 12.142 Atomic orbital electron populations 1.70139 1.07878 1.27379 1.51840 1.25944 0.95623 1.03190 0.94976 0.85495 0.78704 0.78764 0.78337 1.19932 1.21188 1.18651 1.21664 0.93300 0.92307 1.50125 0.92060 1.19414 0.94589 0.92942 0.94931 1.21527 0.93949 0.93673 0.91983 0.91541 1.21848 0.94021 0.96139 0.92813 1.62521 1.20142 1.42336 1.03582 1.22538 0.96566 0.90648 0.98277 1.22617 1.00614 0.99685 0.92503 1.22341 0.96333 0.99331 0.96979 1.22593 0.93971 0.96088 0.90786 0.92136 1.21832 0.95132 0.95539 0.93346 1.60487 1.28604 1.40374 1.01714 0.93111 0.97857 1.00594 0.94197 0.91742 0.91621 0.93826 0.89287 0.90453 0.88587 0.92246 0.89330 0.96755 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -30.44 8.46 25.60 0.22 -30.22 16 8 H 0.06 3.30 7.13 -2.91 -0.02 3.28 16 9 C 0.02 1.07 4.14 29.85 0.12 1.19 16 10 C 0.10 4.28 3.04 45.21 0.14 4.42 16 11 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 12 C 0.08 3.01 5.44 86.85 0.47 3.48 16 13 N -0.56 -20.04 4.07 -866.37 -3.52 -23.56 16 14 C 0.05 1.33 6.88 87.09 0.60 1.93 16 15 C -0.12 -2.60 6.99 32.06 0.22 -2.38 16 16 C -0.11 -2.82 6.63 31.70 0.21 -2.61 16 17 C 0.07 2.32 2.75 44.58 0.12 2.44 16 18 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 19 C 0.07 2.59 6.01 85.94 0.52 3.10 16 20 N -0.68 -26.73 6.55 -490.65 -3.22 -29.95 16 21 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 22 H 0.00 0.19 6.14 -2.39 -0.01 0.17 16 23 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 24 H 0.04 1.35 8.09 -2.38 -0.02 1.34 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.04 1.11 8.07 -2.39 -0.02 1.09 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.71 8.11 -2.39 -0.02 1.69 16 32 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.01 0.63 6.60 -2.39 -0.02 0.62 16 34 H 0.34 13.97 7.58 -89.69 -0.68 13.29 16 Total: -1.00 -65.55 263.86 -0.96 -66.50 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.39 Total: 16.12 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.09 Total: -18.17 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -6.46 Total: -111.35 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.55 -0.96 -66.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791545.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.377 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds