Wall clock time and date at job start Mon Mar 30 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47433 * 175.58333 * 3 2 1 5 5 H 1.08998 * 109.46914 * 54.30235 * 4 3 2 6 6 C 1.50700 * 109.47162 * 174.30400 * 4 3 2 7 7 H 1.07998 * 119.99864 * 114.54902 * 6 4 3 8 8 C 1.37874 * 119.99894 * 294.54617 * 6 4 3 9 9 N 1.31519 * 120.00267 * 350.81684 * 8 6 4 10 10 Si 1.86801 * 120.00096 * 170.80952 * 8 6 4 11 11 H 1.48504 * 109.46637 * 60.00414 * 10 8 6 12 12 H 1.48501 * 109.47218 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47249 * 300.00569 * 10 8 6 14 14 C 1.50707 * 109.47007 * 294.30423 * 4 3 2 15 15 N 1.28244 * 122.70076 * 334.71107 * 14 4 3 16 16 C 1.46982 * 110.18465 * 179.84099 * 15 14 4 17 17 C 1.54226 * 103.83309 * 0.38957 * 16 15 14 18 18 N 1.36282 * 122.70277 * 154.99798 * 14 4 3 19 19 C 1.46494 * 125.83834 * 0.03905 * 18 14 4 20 20 H 1.09009 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47497 * 299.99506 * 1 2 3 22 22 H 1.08997 * 109.47171 * 60.00231 * 1 2 3 23 23 H 1.09000 * 109.47752 * 120.00224 * 2 1 3 24 24 H 1.09004 * 109.47428 * 239.99785 * 2 1 3 25 25 H 1.09000 * 109.46956 * 295.58404 * 3 2 1 26 26 H 1.09007 * 109.46728 * 55.58137 * 3 2 1 27 27 H 0.96997 * 120.00306 * 179.97438 * 9 8 6 28 28 H 1.08998 * 110.74167 * 241.71264 * 16 15 14 29 29 H 1.08995 * 110.49401 * 118.93946 * 16 15 14 30 30 H 1.08996 * 110.69787 * 241.39529 * 17 16 15 31 31 H 1.08997 * 110.70248 * 118.17132 * 17 16 15 32 32 H 1.08995 * 109.47725 * 89.99107 * 19 18 14 33 33 H 1.09001 * 109.47421 * 209.99945 * 19 18 14 34 34 H 1.09008 * 109.46738 * 329.99710 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5659 1.4440 0.1111 5 1 3.9883 0.8235 -0.6792 6 6 4.0784 2.8542 -0.0293 7 1 4.5650 3.3375 0.8050 8 6 3.9261 3.5274 -1.2229 9 7 3.5008 2.8865 -2.2897 10 14 4.3238 5.3497 -1.3248 11 1 5.7497 5.5657 -0.9705 12 1 4.0780 5.8335 -2.7071 13 1 3.4595 6.0987 -0.3776 14 6 3.9724 0.8931 1.4537 15 7 3.2067 0.9376 2.4815 16 6 3.8734 0.3218 3.6376 17 6 5.2469 -0.1096 3.0846 18 7 5.1854 0.3127 1.6748 19 6 6.2473 0.1392 0.6806 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.7426 1.9330 -0.9269 26 1 1.6133 1.9787 0.8478 27 1 3.3933 3.3602 -3.1293 28 1 3.3134 -0.5444 3.9899 29 1 3.9954 1.0495 4.4399 30 1 5.3696 -1.1902 3.1580 31 1 6.0521 0.4071 3.6068 32 1 6.9013 1.0110 0.6915 33 1 6.8265 -0.7527 0.9194 34 1 5.8038 0.0301 -0.3093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:46 Heat of formation + Delta-G solvation = 17.553317 kcal Electronic energy + Delta-G solvation = -14510.114540 eV Core-core repulsion = 12249.874262 eV Total energy + Delta-G solvation = -2260.240278 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.34879 -35.09046 -32.59675 -32.18934 -30.41518 -27.66438 -25.74915 -25.05358 -22.20899 -21.53209 -20.16435 -17.65537 -16.34419 -15.73591 -15.30212 -14.40247 -14.20626 -13.67414 -12.99084 -12.83216 -12.64394 -12.25148 -11.78857 -11.55936 -11.44562 -11.30231 -11.03964 -10.89642 -10.65319 -10.36525 -10.05288 -9.82407 -9.77687 -9.29054 -8.83768 -8.80720 -8.33903 -7.03801 -6.06804 -4.08438 3.31956 3.36774 3.39877 3.63549 3.88800 4.44791 5.15769 5.27228 5.49006 5.51934 5.70112 5.82571 5.95121 5.98539 6.07277 6.11887 6.15669 6.32433 6.38417 6.65153 6.68433 6.83978 6.86877 7.02306 7.21944 7.29417 7.35579 7.72728 7.89769 7.95651 8.26959 8.42427 8.90441 9.11401 9.53956 11.01686 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.012857 C = 0.009747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.884799 B = 2177.330399 C = 2871.993924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.122 4.122 3 C -0.090 4.090 4 C 0.101 3.899 5 H 0.048 0.952 6 C -0.506 4.506 7 H 0.054 0.946 8 C 0.069 3.931 9 N -0.885 5.885 10 Si 0.892 3.108 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.407 3.593 15 N -0.595 5.595 16 C 0.024 3.976 17 C 0.077 3.923 18 N -0.650 5.650 19 C 0.119 3.881 20 H 0.036 0.964 21 H 0.049 0.951 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.030 -5.845 4.775 7.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.128 4.128 4 C 0.081 3.919 5 H 0.066 0.934 6 C -0.545 4.545 7 H 0.072 0.928 8 C -0.134 4.134 9 N -0.523 5.523 10 Si 0.720 3.280 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.133 3.867 15 N -0.324 5.324 16 C -0.106 4.106 17 C -0.048 4.048 18 N -0.374 5.374 19 C -0.024 4.024 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.242 -5.589 4.889 7.528 hybrid contribution 1.200 0.616 0.023 1.349 sum 2.442 -4.972 4.911 7.403 Atomic orbital electron populations 1.21712 0.97505 0.99671 1.01162 1.21585 0.94425 0.99810 1.00121 1.21416 0.95988 0.93481 1.01948 1.17793 0.93788 0.95931 0.84393 0.93420 1.20768 1.38635 0.97317 0.97801 0.92756 1.24870 0.95071 0.98139 0.95296 1.69943 1.46356 1.35774 1.00212 0.86657 0.78799 0.85576 0.77008 1.20380 1.21248 1.20094 1.24037 0.80653 0.84371 0.97633 1.74295 1.29051 1.30279 0.98775 1.22979 0.91376 0.98716 0.97570 1.22498 0.99659 0.98715 0.83888 1.48033 1.16276 1.63833 1.09209 1.21271 0.89530 0.99565 0.92059 0.94457 0.93228 0.93367 0.93066 0.93703 0.90797 0.92867 0.92742 0.91393 0.91373 0.92390 0.92385 0.93473 0.93074 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.91 37.15 0.37 -2.19 16 2 C -0.12 -2.52 5.79 -26.73 -0.15 -2.68 16 3 C -0.09 -2.15 4.28 -26.73 -0.11 -2.27 16 4 C 0.10 2.51 1.60 -92.92 -0.15 2.36 16 5 H 0.05 1.25 6.84 -51.93 -0.36 0.90 16 6 C -0.51 -13.73 8.47 -34.44 -0.29 -14.02 16 7 H 0.05 1.53 7.76 -52.49 -0.41 1.12 16 8 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 9 N -0.89 -24.42 12.15 55.43 0.67 -23.75 16 10 Si 0.89 21.10 29.55 -169.99 -5.02 16.07 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.41 9.27 5.73 -156.11 -0.89 8.38 16 15 N -0.60 -13.41 9.94 -57.40 -0.57 -13.98 16 16 C 0.02 0.43 8.06 -3.14 -0.03 0.40 16 17 C 0.08 1.28 7.78 -2.96 -0.02 1.25 16 18 N -0.65 -12.80 3.44 -178.02 -0.61 -13.41 16 19 C 0.12 2.03 10.96 59.84 0.66 2.69 16 20 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 1.08 6.82 -51.93 -0.35 0.73 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.92 6.78 -51.93 -0.35 1.57 16 26 H 0.05 1.33 7.69 -51.93 -0.40 0.93 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.38 6.82 -51.92 -0.35 1.02 16 LS Contribution 276.57 15.07 4.17 4.17 Total: -1.00 -28.76 276.57 -7.67 -36.43 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.58 Total: -1.21 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.72 Total: -4.31 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.51 Total: -51.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.76 -7.67 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.981 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds