Wall clock time and date at job start Mon Mar 30 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47433 * 175.58333 * 3 2 1 5 5 H 1.08998 * 109.46914 * 54.30235 * 4 3 2 6 6 C 1.50700 * 109.47162 * 174.30400 * 4 3 2 7 7 H 1.07998 * 119.99864 * 114.54902 * 6 4 3 8 8 C 1.37874 * 119.99894 * 294.54617 * 6 4 3 9 9 N 1.31519 * 120.00267 * 350.81684 * 8 6 4 10 10 Si 1.86801 * 120.00096 * 170.80952 * 8 6 4 11 11 H 1.48504 * 109.46637 * 60.00414 * 10 8 6 12 12 H 1.48501 * 109.47218 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47249 * 300.00569 * 10 8 6 14 14 C 1.50707 * 109.47007 * 294.30423 * 4 3 2 15 15 N 1.28244 * 122.70076 * 334.71107 * 14 4 3 16 16 C 1.46982 * 110.18465 * 179.84099 * 15 14 4 17 17 C 1.54226 * 103.83309 * 0.38957 * 16 15 14 18 18 N 1.36282 * 122.70277 * 154.99798 * 14 4 3 19 19 C 1.46494 * 125.83834 * 0.03905 * 18 14 4 20 20 H 1.09009 * 109.46765 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47497 * 299.99506 * 1 2 3 22 22 H 1.08997 * 109.47171 * 60.00231 * 1 2 3 23 23 H 1.09000 * 109.47752 * 120.00224 * 2 1 3 24 24 H 1.09004 * 109.47428 * 239.99785 * 2 1 3 25 25 H 1.09000 * 109.46956 * 295.58404 * 3 2 1 26 26 H 1.09007 * 109.46728 * 55.58137 * 3 2 1 27 27 H 0.96997 * 120.00306 * 179.97438 * 9 8 6 28 28 H 1.08998 * 110.74167 * 241.71264 * 16 15 14 29 29 H 1.08995 * 110.49401 * 118.93946 * 16 15 14 30 30 H 1.08996 * 110.69787 * 241.39529 * 17 16 15 31 31 H 1.08997 * 110.70248 * 118.17132 * 17 16 15 32 32 H 1.08995 * 109.47725 * 89.99107 * 19 18 14 33 33 H 1.09001 * 109.47421 * 209.99945 * 19 18 14 34 34 H 1.09008 * 109.46738 * 329.99710 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5659 1.4440 0.1111 5 1 3.9883 0.8235 -0.6792 6 6 4.0784 2.8542 -0.0293 7 1 4.5650 3.3375 0.8050 8 6 3.9261 3.5274 -1.2229 9 7 3.5008 2.8865 -2.2897 10 14 4.3238 5.3497 -1.3248 11 1 5.7497 5.5657 -0.9705 12 1 4.0780 5.8335 -2.7071 13 1 3.4595 6.0987 -0.3776 14 6 3.9724 0.8931 1.4537 15 7 3.2067 0.9376 2.4815 16 6 3.8734 0.3218 3.6376 17 6 5.2469 -0.1096 3.0846 18 7 5.1854 0.3127 1.6748 19 6 6.2473 0.1392 0.6806 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.7426 1.9330 -0.9269 26 1 1.6133 1.9787 0.8478 27 1 3.3933 3.3602 -3.1293 28 1 3.3134 -0.5444 3.9899 29 1 3.9954 1.0495 4.4399 30 1 5.3696 -1.1902 3.1580 31 1 6.0521 0.4071 3.6068 32 1 6.9013 1.0110 0.6915 33 1 6.8265 -0.7527 0.9194 34 1 5.8038 0.0301 -0.3093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:46 Heat of formation + Delta-G solvation = 0.159844 kcal Electronic energy + Delta-G solvation = -14510.868778 eV Core-core repulsion = 12249.874262 eV Total energy + Delta-G solvation = -2260.994516 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91682 -36.91074 -34.44638 -33.76816 -32.11755 -29.30076 -27.18037 -26.96748 -24.03062 -22.95715 -21.89431 -19.39299 -18.34703 -17.39867 -16.75992 -16.29233 -15.75088 -15.26799 -14.62672 -14.39390 -14.30785 -13.94597 -13.26912 -13.08704 -12.98680 -12.87844 -12.79785 -12.63868 -12.46642 -12.13218 -11.69439 -11.65024 -11.63307 -11.15786 -10.70712 -10.46673 -10.37510 -8.55443 -8.14186 -6.22457 1.41260 1.44655 1.51248 1.93055 2.43811 2.48580 3.16275 3.77513 4.02303 4.23035 4.29044 4.35575 4.41069 4.54216 4.57977 4.70612 4.75065 4.92364 4.98150 5.07255 5.12700 5.20859 5.21683 5.27957 5.40343 5.56110 5.69396 5.79910 5.90875 5.98326 6.27181 6.78408 6.80085 7.42854 7.47932 8.93331 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.023099 B = 0.012857 C = 0.009747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.884799 B = 2177.330399 C = 2871.993924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C -0.079 4.079 4 C 0.103 3.897 5 H 0.027 0.973 6 C -0.522 4.522 7 H 0.038 0.962 8 C 0.029 3.971 9 N -0.907 5.907 10 Si 0.948 3.052 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.395 3.605 15 N -0.625 5.625 16 C 0.018 3.982 17 C 0.080 3.920 18 N -0.658 5.658 19 C 0.119 3.881 20 H 0.064 0.936 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.265 0.735 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -6.529 5.669 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C -0.118 4.118 4 C 0.083 3.917 5 H 0.045 0.955 6 C -0.561 4.561 7 H 0.056 0.944 8 C -0.171 4.171 9 N -0.545 5.545 10 Si 0.774 3.226 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.203 1.203 14 C 0.119 3.881 15 N -0.354 5.354 16 C -0.111 4.111 17 C -0.043 4.043 18 N -0.381 5.381 19 C -0.024 4.024 20 H 0.083 0.917 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.726 -6.285 5.790 8.719 hybrid contribution 1.070 0.807 -0.213 1.357 sum 2.796 -5.478 5.578 8.303 Atomic orbital electron populations 1.21653 0.95081 1.01515 1.01211 1.21454 0.96538 0.97249 0.99775 1.21219 0.95706 0.95262 0.99572 1.17580 0.93990 0.94607 0.85548 0.95544 1.20912 1.38995 0.98703 0.97440 0.94409 1.25511 0.94953 1.01703 0.94948 1.70028 1.46824 1.37090 1.00516 0.85775 0.78699 0.81005 0.77167 1.19723 1.20356 1.20324 1.23587 0.82281 0.85462 0.96764 1.74192 1.30440 1.30713 1.00097 1.23138 0.92291 0.99406 0.96293 1.22675 0.99171 1.00616 0.81862 1.48235 1.15665 1.63237 1.10959 1.21357 0.88988 1.01221 0.90875 0.91693 0.93217 0.93305 0.93350 0.93929 0.93448 0.94538 0.92579 0.89578 0.90597 0.89488 0.90678 0.93981 0.89001 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.91 71.98 0.71 -4.02 16 2 C -0.11 -4.65 5.79 30.59 0.18 -4.48 16 3 C -0.08 -3.88 4.28 30.60 0.13 -3.75 16 4 C 0.10 5.24 1.60 -12.28 -0.02 5.22 16 5 H 0.03 1.45 6.84 -2.39 -0.02 1.43 16 6 C -0.52 -28.94 8.47 25.60 0.22 -28.73 16 7 H 0.04 2.17 7.76 -2.91 -0.02 2.15 16 8 C 0.03 1.60 5.16 84.65 0.44 2.04 16 9 N -0.91 -50.86 12.15 21.45 0.26 -50.60 16 10 Si 0.95 43.52 29.55 68.60 2.03 45.55 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.39 17.94 5.73 138.37 0.79 18.73 16 15 N -0.62 -27.79 9.94 -335.49 -3.34 -31.13 16 16 C 0.02 0.62 8.06 86.70 0.70 1.32 16 17 C 0.08 2.42 7.78 86.64 0.67 3.09 16 18 N -0.66 -25.03 3.44 -717.14 -2.47 -27.49 16 19 C 0.12 3.90 10.96 127.77 1.40 5.30 16 20 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 2.02 6.82 -2.39 -0.02 2.00 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.05 2.54 6.78 -2.39 -0.02 2.52 16 26 H 0.04 1.87 7.69 -2.38 -0.02 1.85 16 27 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.06 2.07 6.82 -2.38 -0.02 2.06 16 Total: -1.00 -61.88 276.57 2.76 -59.12 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.05 Total: 9.83 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.22 Total: -5.27 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -5.54 Total: -109.23 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -61.88 2.76 -59.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.281 kcal (2) G-P(sol) polarization free energy of solvation -61.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds