Wall clock time and date at job start Mon Mar 30 2020 02:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00329 * 2 1 4 4 H 1.48502 * 109.46856 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46852 * 299.99787 * 3 2 1 6 6 H 1.48495 * 109.47224 * 59.99756 * 3 2 1 7 7 C 1.37879 * 119.99424 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00329 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.53111 * 300.09735 * 9 7 2 11 11 C 1.53123 * 109.49150 * 60.19685 * 9 7 2 12 12 C 1.53127 * 109.15019 * 177.60758 * 11 9 7 13 13 C 1.53042 * 109.27596 * 302.34079 * 12 11 9 14 14 N 1.46843 * 109.52278 * 59.17923 * 13 12 11 15 15 C 1.46895 * 110.99970 * 174.15687 * 14 13 12 16 16 C 1.52999 * 117.49777 * 7.83242 * 15 14 13 17 17 C 1.53001 * 60.00239 * 252.50595 * 16 15 14 18 18 C 1.46847 * 111.20124 * 298.25596 * 14 13 12 19 19 H 0.97000 * 119.99419 * 0.02562 * 1 2 3 20 20 H 1.00893 * 111.00508 * 59.90378 * 10 9 7 21 21 H 1.00906 * 110.99903 * 183.85265 * 10 9 7 22 22 H 1.09003 * 109.53012 * 57.70331 * 11 9 7 23 23 H 1.08997 * 109.57453 * 297.53608 * 11 9 7 24 24 H 1.08997 * 109.49981 * 182.39822 * 12 11 9 25 25 H 1.08999 * 109.50124 * 62.28085 * 12 11 9 26 26 H 1.08993 * 109.46299 * 299.16259 * 13 12 11 27 27 H 1.09000 * 109.45057 * 179.19029 * 13 12 11 28 28 H 1.09003 * 115.55521 * 153.53951 * 15 14 13 29 29 H 1.09000 * 117.49830 * 0.02562 * 16 15 14 30 30 H 1.09003 * 117.50021 * 145.01964 * 16 15 14 31 31 H 1.08993 * 117.50237 * 252.50688 * 17 16 15 32 32 H 1.09002 * 117.49242 * 107.48231 * 17 16 15 33 33 H 1.09002 * 109.46481 * 181.76055 * 18 14 13 34 34 H 1.08994 * 109.46283 * 301.73908 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 0.4036 -2.5771 1.1980 11 6 0.3746 -2.5832 -1.2523 12 6 -0.3414 -3.9366 -1.2748 13 6 0.6984 -5.0589 -1.2371 14 7 1.5107 -4.9348 -0.0201 15 6 2.4274 -6.0740 0.1195 16 6 2.5227 -7.0519 -1.0534 17 6 1.8088 -7.4688 0.2341 18 6 2.2446 -3.6630 0.0011 19 1 -0.4849 0.8401 -0.0004 20 1 -0.2614 -1.8187 1.2204 21 1 -0.0639 -3.4697 1.2527 22 1 0.9987 -2.4865 -2.1407 23 1 -0.3632 -1.7811 -1.2364 24 1 -0.9338 -4.0198 -2.1859 25 1 -0.9951 -4.0169 -0.4063 26 1 1.3431 -4.9863 -2.1130 27 1 0.1913 -6.0238 -1.2385 28 1 3.3370 -5.8788 0.6875 29 1 1.9055 -6.8496 -1.9287 30 1 3.4952 -7.5000 -1.2573 31 1 2.3116 -8.1911 0.8771 32 1 0.7215 -7.5408 0.2059 33 1 2.8607 -3.6141 0.8989 34 1 2.8819 -3.5968 -0.8807 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060617.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:55 Heat of formation + Delta-G solvation = 31.299687 kcal Electronic energy + Delta-G solvation = -14780.367139 eV Core-core repulsion = 12520.722948 eV Total energy + Delta-G solvation = -2259.644191 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.10427 -36.31715 -33.02647 -30.81388 -30.66232 -27.31461 -25.06988 -23.58567 -22.21299 -21.59185 -19.79517 -17.91537 -16.59665 -15.73593 -15.18358 -14.53656 -13.87747 -13.63359 -13.29274 -12.93401 -12.73124 -12.20132 -11.88112 -11.57760 -11.36125 -10.93908 -10.80783 -10.74336 -10.41746 -10.28511 -10.11722 -9.99315 -9.81995 -9.12088 -8.86582 -8.50328 -7.52557 -6.75482 -6.01013 -4.06217 3.30272 3.38684 3.42516 4.04105 4.39276 4.53246 5.11941 5.19084 5.25642 5.31435 5.57197 5.76036 5.81741 5.95699 6.03536 6.13830 6.26835 6.31199 6.36647 6.45900 6.60836 6.64617 6.82900 6.90568 7.27356 7.37306 7.67607 7.76176 7.80050 8.08060 8.36518 8.81852 9.23712 9.46284 9.63180 11.05009 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.053980 B = 0.009093 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.589405 B = 3078.679734 C = 3273.323437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.056 0.944 9 C 0.251 3.749 10 N -0.837 5.837 11 C -0.144 4.144 12 C -0.121 4.121 13 C 0.059 3.941 14 N -0.502 5.502 15 C 0.032 3.968 16 C -0.227 4.227 17 C -0.176 4.176 18 C 0.077 3.923 19 H 0.260 0.740 20 H 0.351 0.649 21 H 0.305 0.695 22 H 0.034 0.966 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -9.628 -2.166 9.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.159 3.841 10 N -0.369 5.369 11 C -0.184 4.184 12 C -0.159 4.159 13 C -0.069 4.069 14 N -0.224 5.224 15 C -0.078 4.078 16 C -0.266 4.266 17 C -0.214 4.214 18 C -0.050 4.050 19 H 0.070 0.930 20 H 0.168 0.832 21 H 0.116 0.884 22 H 0.053 0.947 23 H 0.110 0.890 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.519 -9.362 -1.337 9.579 hybrid contribution 0.197 0.700 -1.485 1.654 sum 1.716 -8.662 -2.822 9.271 Atomic orbital electron populations 1.69654 1.05824 1.26384 1.51730 1.24900 0.94887 0.98965 0.94306 0.86493 0.80085 0.83659 0.77397 1.19922 1.21282 1.21011 1.21074 0.92770 0.89990 1.49698 0.92570 1.18272 0.89388 0.90772 0.85671 1.59163 1.29355 1.06101 1.42258 1.22432 1.00881 0.94813 1.00280 1.21717 0.97355 0.96589 1.00270 1.22144 0.95584 0.98554 0.90633 1.61787 1.22559 1.01534 1.36477 1.22681 0.97236 0.87753 1.00152 1.23515 1.02307 1.06992 0.93783 1.22992 1.00223 0.98338 0.99881 1.22308 0.96183 0.87419 0.99116 0.92963 0.83173 0.88411 0.94743 0.88988 0.93400 0.92179 0.95417 0.92278 0.86943 0.88581 0.89481 0.89083 0.88895 0.91356 0.96039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 9.58 55.43 0.53 -23.79 16 2 C 0.07 1.90 5.21 -17.82 -0.09 1.80 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.50 -13.44 8.22 -34.44 -0.28 -13.72 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.25 6.11 0.64 -132.67 -0.09 6.02 16 10 N -0.84 -20.41 8.78 -0.13 0.00 -20.41 16 11 C -0.14 -3.34 4.70 -26.60 -0.12 -3.47 16 12 C -0.12 -2.35 5.76 -26.64 -0.15 -2.50 16 13 C 0.06 1.04 4.09 -3.83 -0.02 1.02 16 14 N -0.50 -9.36 4.16 -226.70 -0.94 -10.30 16 15 C 0.03 0.50 6.12 -67.71 -0.41 0.09 16 16 C -0.23 -3.07 9.51 -26.73 -0.25 -3.32 16 17 C -0.18 -2.35 9.97 -26.73 -0.27 -2.61 16 18 C 0.08 1.67 4.30 -3.84 -0.02 1.65 16 19 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 20 H 0.35 9.16 6.93 -39.30 -0.27 8.89 16 21 H 0.30 6.95 6.76 -39.29 -0.27 6.68 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.09 2.38 6.17 -51.93 -0.32 2.05 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 1.18 6.90 -51.93 -0.36 0.83 16 26 H 0.03 0.50 7.35 -51.93 -0.38 0.11 16 27 H 0.06 0.94 6.49 -51.93 -0.34 0.60 16 28 H 0.11 1.72 7.99 -51.93 -0.41 1.31 16 29 H 0.10 1.33 5.91 -51.93 -0.31 1.02 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.26 7.55 -51.93 -0.39 0.87 16 33 H 0.07 1.52 8.06 -51.93 -0.42 1.11 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 258.76 15.07 3.90 3.90 Total: -1.00 -26.70 258.76 -8.36 -35.07 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.12 Total: 14.42 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.71 Total: -15.04 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.41 Total: -54.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -26.70 -8.36 -35.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060617.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.366 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds