Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46917 * 264.95475 * 3 2 1 5 5 H 1.48502 * 109.47474 * 24.95345 * 3 2 1 6 6 H 1.48501 * 109.47013 * 144.95359 * 3 2 1 7 7 C 1.37868 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00637 * 187.68841 * 7 2 1 9 9 C 1.50701 * 119.99863 * 7.68601 * 7 2 1 10 10 N 1.46905 * 109.53389 * 54.45767 * 9 7 2 11 11 C 1.53102 * 109.49135 * 294.36477 * 9 7 2 12 12 C 1.53122 * 109.15427 * 182.39636 * 11 9 7 13 13 C 1.53041 * 109.27738 * 57.65351 * 12 11 9 14 14 N 1.46844 * 109.52463 * 300.81975 * 13 12 11 15 15 C 1.46903 * 110.99871 * 185.83748 * 14 13 12 16 16 C 1.52996 * 117.49637 * 124.41129 * 15 14 13 17 17 C 1.53000 * 60.00122 * 252.51072 * 16 15 14 18 18 C 1.46850 * 111.19769 * 61.74169 * 14 13 12 19 19 H 0.96996 * 119.99742 * 0.02562 * 1 2 3 20 20 H 1.00898 * 110.99916 * 294.17186 * 10 9 7 21 21 H 1.00900 * 110.99888 * 58.12859 * 10 9 7 22 22 H 1.09003 * 109.52327 * 62.49752 * 11 9 7 23 23 H 1.08998 * 109.57659 * 302.32858 * 11 9 7 24 24 H 1.08999 * 109.50533 * 297.71969 * 12 11 9 25 25 H 1.08993 * 109.53348 * 177.61093 * 12 11 9 26 26 H 1.08998 * 109.45955 * 180.80102 * 13 12 11 27 27 H 1.09006 * 109.44972 * 60.82939 * 13 12 11 28 28 H 1.09001 * 115.54912 * 270.11967 * 15 14 13 29 29 H 1.09004 * 117.50042 * 0.02562 * 16 15 14 30 30 H 1.09009 * 117.50060 * 145.02116 * 16 15 14 31 31 H 1.09000 * 117.49942 * 252.51380 * 17 16 15 32 32 H 1.08995 * 117.49755 * 107.48995 * 17 16 15 33 33 H 1.09001 * 109.46130 * 58.27597 * 18 14 13 34 34 H 1.09000 * 109.45874 * 178.24934 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6032 1.9849 -1.3947 5 1 1.3973 2.6812 0.5907 6 1 3.4893 1.4734 0.8040 7 6 2.0046 -1.1939 0.0005 8 1 3.0773 -1.1981 0.1257 9 6 1.2613 -2.4933 -0.1734 10 7 0.4556 -2.4378 -1.4006 11 6 0.3437 -2.7221 1.0306 12 6 -0.3624 -4.0718 0.8749 13 6 0.6865 -5.1788 0.7463 14 7 1.5385 -4.9145 -0.4201 15 6 2.4681 -6.0273 -0.6560 16 6 2.4492 -6.6825 -2.0385 17 6 1.8681 -7.4236 -0.8326 18 6 2.2632 -3.6459 -0.2718 19 1 -0.4849 0.8400 -0.0004 20 1 -0.2766 -1.7481 -1.3215 21 1 1.0359 -2.2584 -2.2063 22 1 -0.3992 -1.9258 1.0790 23 1 0.9357 -2.7242 1.9458 24 1 -0.9856 -4.0555 -0.0192 25 1 -0.9851 -4.2604 1.7493 26 1 0.1870 -6.1395 0.6210 27 1 1.3006 -5.2034 1.6465 28 1 3.4291 -5.9531 -0.1469 29 1 1.7474 -6.2876 -2.7731 30 1 3.3980 -7.0395 -2.4393 31 1 2.4346 -8.2681 -0.4401 32 1 0.7837 -7.5166 -0.7738 33 1 2.8699 -3.6779 0.6332 34 1 2.9088 -3.4932 -1.1366 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = 25.898120 kcal Electronic energy + Delta-G solvation = -14720.437381 eV Core-core repulsion = 12460.558961 eV Total energy + Delta-G solvation = -2259.878420 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.60266 -36.16675 -33.30701 -30.82088 -30.54654 -27.22864 -25.01866 -23.34237 -22.18666 -21.04327 -19.92231 -18.01409 -16.56423 -15.73121 -14.94703 -14.32475 -13.96452 -13.61225 -13.37210 -12.95230 -12.60736 -12.08457 -11.62852 -11.32992 -11.15510 -11.02780 -10.85947 -10.83238 -10.25704 -10.20325 -10.00301 -9.75995 -9.57527 -9.40944 -8.93322 -8.39647 -7.42805 -6.89714 -5.97934 -4.17702 3.24329 3.31720 3.34380 4.15424 4.31611 4.52623 5.16784 5.27210 5.32967 5.58399 5.76055 5.89703 5.95311 6.07785 6.20273 6.25148 6.33329 6.42556 6.52191 6.59167 6.69286 6.83893 6.88105 7.11259 7.37259 7.64320 7.79030 7.92009 7.99395 8.01334 8.28431 8.80380 9.16033 9.33775 9.56290 10.93213 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049520 B = 0.009275 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.291143 B = 3018.273692 C = 3278.686359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.070 3.930 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.245 3.755 10 N -0.829 5.829 11 C -0.100 4.100 12 C -0.112 4.112 13 C 0.068 3.932 14 N -0.490 5.490 15 C 0.008 3.992 16 C -0.165 4.165 17 C -0.182 4.182 18 C 0.084 3.916 19 H 0.263 0.737 20 H 0.346 0.654 21 H 0.309 0.691 22 H 0.087 0.913 23 H 0.030 0.970 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.015 0.985 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.016 0.984 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.846 -8.873 -0.474 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.152 3.848 10 N -0.358 5.358 11 C -0.138 4.138 12 C -0.149 4.149 13 C -0.060 4.060 14 N -0.214 5.214 15 C -0.101 4.101 16 C -0.203 4.203 17 C -0.219 4.219 18 C -0.044 4.044 19 H 0.073 0.927 20 H 0.162 0.838 21 H 0.118 0.882 22 H 0.105 0.895 23 H 0.048 0.952 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.034 0.966 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.176 -9.464 -0.685 9.561 hybrid contribution 1.522 1.918 0.743 2.559 sum 2.698 -7.546 0.058 8.014 Atomic orbital electron populations 1.69732 1.05668 1.26722 1.50553 1.24929 0.94854 0.98968 0.94456 0.86629 0.79837 0.83374 0.78206 1.20644 1.21290 1.20153 1.21888 0.94113 0.91956 1.50525 0.93048 1.18217 0.88987 0.89186 0.88390 1.59296 1.16534 1.56100 1.03834 1.21564 0.99687 0.95298 0.97260 1.21584 0.97154 0.95825 1.00370 1.21976 0.95123 0.98476 0.90379 1.61713 1.20182 1.00459 1.39025 1.22465 0.96423 0.90987 1.00212 1.22993 1.02065 1.03257 0.91975 1.22978 1.00952 0.94363 1.03615 1.22163 0.95796 0.88509 0.97958 0.92704 0.83834 0.88227 0.89472 0.95153 0.90805 0.94275 0.92506 0.96643 0.90527 0.88148 0.89643 0.89564 0.88594 0.96587 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.77 9.71 55.43 0.54 -23.23 16 2 C 0.07 1.85 5.23 -17.82 -0.09 1.76 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.49 8.13 -34.44 -0.28 -14.77 16 8 H 0.05 1.39 7.76 -52.49 -0.41 0.98 16 9 C 0.24 5.92 0.53 -132.68 -0.07 5.85 16 10 N -0.83 -19.76 8.01 -0.13 0.00 -19.76 16 11 C -0.10 -2.36 4.70 -26.62 -0.13 -2.49 16 12 C -0.11 -2.28 5.93 -26.65 -0.16 -2.43 16 13 C 0.07 1.28 5.34 -3.83 -0.02 1.26 16 14 N -0.49 -9.55 4.66 -226.69 -1.06 -10.60 16 15 C 0.01 0.14 5.30 -67.71 -0.36 -0.22 16 16 C -0.16 -2.37 10.46 -26.73 -0.28 -2.65 16 17 C -0.18 -2.49 9.70 -26.73 -0.26 -2.75 16 18 C 0.08 1.83 4.29 -3.83 -0.02 1.82 16 19 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 20 H 0.35 8.82 6.92 -39.29 -0.27 8.54 16 21 H 0.31 7.31 8.99 -39.29 -0.35 6.95 16 22 H 0.09 2.28 6.32 -51.93 -0.33 1.95 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.60 7.72 -51.93 -0.40 1.20 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.96 6.68 -51.93 -0.35 0.61 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 29 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.35 7.23 -51.93 -0.38 0.97 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 265.96 15.07 4.01 4.01 Total: -1.00 -26.20 265.96 -8.61 -34.81 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.42 Total: 13.59 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.66 Total: -14.63 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.52 Total: -53.59 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.20 -8.61 -34.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.709 kcal (2) G-P(sol) polarization free energy of solvation -26.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds