Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46917 * 264.95475 * 3 2 1 5 5 H 1.48502 * 109.47474 * 24.95345 * 3 2 1 6 6 H 1.48501 * 109.47013 * 144.95359 * 3 2 1 7 7 C 1.37868 * 120.00334 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00637 * 187.68841 * 7 2 1 9 9 C 1.50701 * 119.99863 * 7.68601 * 7 2 1 10 10 N 1.46905 * 109.53389 * 54.45767 * 9 7 2 11 11 C 1.53102 * 109.49135 * 294.36477 * 9 7 2 12 12 C 1.53122 * 109.15427 * 182.39636 * 11 9 7 13 13 C 1.53041 * 109.27738 * 57.65351 * 12 11 9 14 14 N 1.46844 * 109.52463 * 300.81975 * 13 12 11 15 15 C 1.46903 * 110.99871 * 185.83748 * 14 13 12 16 16 C 1.52996 * 117.49637 * 124.41129 * 15 14 13 17 17 C 1.53000 * 60.00122 * 252.51072 * 16 15 14 18 18 C 1.46850 * 111.19769 * 61.74169 * 14 13 12 19 19 H 0.96996 * 119.99742 * 0.02562 * 1 2 3 20 20 H 1.00898 * 110.99916 * 294.17186 * 10 9 7 21 21 H 1.00900 * 110.99888 * 58.12859 * 10 9 7 22 22 H 1.09003 * 109.52327 * 62.49752 * 11 9 7 23 23 H 1.08998 * 109.57659 * 302.32858 * 11 9 7 24 24 H 1.08999 * 109.50533 * 297.71969 * 12 11 9 25 25 H 1.08993 * 109.53348 * 177.61093 * 12 11 9 26 26 H 1.08998 * 109.45955 * 180.80102 * 13 12 11 27 27 H 1.09006 * 109.44972 * 60.82939 * 13 12 11 28 28 H 1.09001 * 115.54912 * 270.11967 * 15 14 13 29 29 H 1.09004 * 117.50042 * 0.02562 * 16 15 14 30 30 H 1.09009 * 117.50060 * 145.02116 * 16 15 14 31 31 H 1.09000 * 117.49942 * 252.51380 * 17 16 15 32 32 H 1.08995 * 117.49755 * 107.48995 * 17 16 15 33 33 H 1.09001 * 109.46130 * 58.27597 * 18 14 13 34 34 H 1.09000 * 109.45874 * 178.24934 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6032 1.9849 -1.3947 5 1 1.3973 2.6812 0.5907 6 1 3.4893 1.4734 0.8040 7 6 2.0046 -1.1939 0.0005 8 1 3.0773 -1.1981 0.1257 9 6 1.2613 -2.4933 -0.1734 10 7 0.4556 -2.4378 -1.4006 11 6 0.3437 -2.7221 1.0306 12 6 -0.3624 -4.0718 0.8749 13 6 0.6865 -5.1788 0.7463 14 7 1.5385 -4.9145 -0.4201 15 6 2.4681 -6.0273 -0.6560 16 6 2.4492 -6.6825 -2.0385 17 6 1.8681 -7.4236 -0.8326 18 6 2.2632 -3.6459 -0.2718 19 1 -0.4849 0.8400 -0.0004 20 1 -0.2766 -1.7481 -1.3215 21 1 1.0359 -2.2584 -2.2063 22 1 -0.3992 -1.9258 1.0790 23 1 0.9357 -2.7242 1.9458 24 1 -0.9856 -4.0555 -0.0192 25 1 -0.9851 -4.2604 1.7493 26 1 0.1870 -6.1395 0.6210 27 1 1.3006 -5.2034 1.6465 28 1 3.4291 -5.9531 -0.1469 29 1 1.7474 -6.2876 -2.7731 30 1 3.3980 -7.0395 -2.4393 31 1 2.4346 -8.2681 -0.4401 32 1 0.7837 -7.5166 -0.7738 33 1 2.8699 -3.6779 0.6332 34 1 2.9088 -3.4932 -1.1366 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060622.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = 8.627260 kcal Electronic energy + Delta-G solvation = -14721.186302 eV Core-core repulsion = 12460.558961 eV Total energy + Delta-G solvation = -2260.627341 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17054 -37.66881 -35.05088 -32.72375 -32.19409 -29.09651 -26.96387 -24.96704 -23.48990 -22.52685 -21.36171 -19.79356 -18.43847 -17.21526 -16.80924 -15.89306 -15.72077 -15.21084 -15.01723 -14.70748 -14.22728 -13.69912 -13.34205 -12.97814 -12.87964 -12.72705 -12.67701 -12.27395 -12.08968 -11.92427 -11.54113 -11.34025 -11.27764 -10.91818 -10.72354 -10.36061 -8.96625 -8.85696 -7.98639 -6.26807 1.37048 1.39999 1.47362 2.38764 2.97760 3.09046 3.11134 4.09495 4.18159 4.23422 4.28439 4.36788 4.48100 4.60591 4.75824 4.78771 4.86286 4.87930 4.96592 5.01505 5.17590 5.22030 5.33176 5.42164 5.55914 5.62784 5.88624 6.03120 6.20284 6.34443 6.52330 6.78863 7.19344 7.29872 7.51621 8.88232 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.049520 B = 0.009275 C = 0.008538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.291143 B = 3018.273692 C = 3278.686359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.567 4.567 8 H 0.039 0.961 9 C 0.237 3.763 10 N -0.818 5.818 11 C -0.095 4.095 12 C -0.104 4.104 13 C 0.071 3.929 14 N -0.498 5.498 15 C -0.022 4.022 16 C -0.159 4.159 17 C -0.157 4.157 18 C 0.096 3.904 19 H 0.263 0.737 20 H 0.336 0.664 21 H 0.308 0.692 22 H 0.059 0.941 23 H 0.017 0.983 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.015 0.985 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.005 0.995 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -10.252 -0.639 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.168 4.168 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.607 4.607 8 H 0.057 0.943 9 C 0.144 3.856 10 N -0.345 5.345 11 C -0.133 4.133 12 C -0.142 4.142 13 C -0.057 4.057 14 N -0.221 5.221 15 C -0.131 4.131 16 C -0.197 4.197 17 C -0.194 4.194 18 C -0.033 4.033 19 H 0.073 0.927 20 H 0.150 0.850 21 H 0.117 0.883 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.033 0.967 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.023 0.977 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.485 -10.862 -0.855 10.996 hybrid contribution 1.426 2.329 0.793 2.844 sum 2.911 -8.532 -0.061 9.015 Atomic orbital electron populations 1.69835 1.06430 1.27243 1.50516 1.25523 0.95615 1.01499 0.94208 0.85748 0.78580 0.80095 0.78126 1.20251 1.20948 1.20357 1.22151 0.93753 0.93625 1.51142 0.94289 1.18287 0.89401 0.89325 0.88549 1.59308 1.16074 1.55329 1.03754 1.21424 0.98884 0.96508 0.96519 1.21489 0.97452 0.94541 1.00701 1.21977 0.94638 0.98792 0.90274 1.61642 1.20811 1.00464 1.39209 1.22564 0.96473 0.91636 1.02440 1.23041 1.02951 1.02582 0.91103 1.23066 1.01171 0.93192 1.02010 1.21867 0.94963 0.89446 0.97012 0.92699 0.84966 0.88313 0.92259 0.96406 0.92047 0.92189 0.89887 0.96679 0.90386 0.89481 0.87424 0.86846 0.88673 0.97716 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.72 9.71 21.44 0.21 -48.51 16 2 C 0.03 1.72 5.23 84.65 0.44 2.16 16 3 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.57 -30.61 8.13 25.60 0.21 -30.40 16 8 H 0.04 2.15 7.76 -2.91 -0.02 2.12 16 9 C 0.24 11.59 0.53 2.83 0.00 11.59 16 10 N -0.82 -39.28 8.01 -154.33 -1.24 -40.51 16 11 C -0.09 -4.54 4.70 30.67 0.14 -4.40 16 12 C -0.10 -4.15 5.93 30.65 0.18 -3.97 16 13 C 0.07 2.52 5.34 86.33 0.46 2.98 16 14 N -0.50 -18.79 4.66 -871.10 -4.06 -22.85 16 15 C -0.02 -0.69 5.30 44.91 0.24 -0.45 16 16 C -0.16 -4.15 10.46 30.59 0.32 -3.83 16 17 C -0.16 -3.74 9.70 30.59 0.30 -3.45 16 18 C 0.10 4.21 4.29 86.32 0.37 4.58 16 19 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 20 H 0.34 17.35 6.92 -89.70 -0.62 16.73 16 21 H 0.31 14.70 8.99 -89.69 -0.81 13.89 16 22 H 0.06 3.16 6.32 -2.39 -0.02 3.14 16 23 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 2.60 7.72 -2.39 -0.02 2.59 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.55 6.68 -2.39 -0.02 2.53 16 27 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 29 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.09 2.32 7.23 -2.39 -0.02 2.30 16 33 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.05 2.21 8.12 -2.39 -0.02 2.19 16 Total: -1.00 -55.42 265.96 -0.73 -56.15 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.34 Total: 35.89 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 2.66 Total: -25.18 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -5.08 Total: -111.87 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -55.42 -0.73 -56.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060622.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.782 kcal (2) G-P(sol) polarization free energy of solvation -55.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds