Wall clock time and date at job start Mon Mar 30 2020 03:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 110.36531 * 2 1 4 4 C 1.54383 * 110.51456 * 237.58580 * 2 1 3 5 5 C 1.54255 * 105.06151 * 217.31733 * 4 2 1 6 6 N 1.46901 * 110.41010 * 118.93944 * 5 4 2 7 7 C 1.50702 * 110.32273 * 241.10589 * 5 4 2 8 8 H 1.07998 * 120.00247 * 116.82316 * 7 5 4 9 9 C 1.37882 * 119.99764 * 296.81997 * 7 5 4 10 10 N 1.31517 * 119.99964 * 354.36459 * 9 7 5 11 11 Si 1.86794 * 120.00130 * 174.37027 * 9 7 5 12 12 H 1.48500 * 109.47212 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47003 * 240.00058 * 11 9 7 14 14 H 1.48500 * 109.47485 * 119.99676 * 11 9 7 15 15 C 1.54381 * 105.06052 * 359.97438 * 5 4 2 16 16 N 1.48557 * 104.59475 * 23.85344 * 15 5 4 17 17 C 1.46900 * 110.99736 * 200.96244 * 16 15 5 18 18 C 1.53003 * 117.49820 * 128.49901 * 17 16 15 19 19 C 1.52999 * 117.50124 * 59.87618 * 17 16 15 20 20 H 1.08998 * 109.47367 * 297.64334 * 1 2 3 21 21 H 1.09004 * 109.47115 * 57.64774 * 1 2 3 22 22 H 1.09007 * 109.46816 * 177.64605 * 1 2 3 23 23 H 1.09002 * 110.32213 * 98.41669 * 4 2 1 24 24 H 1.09003 * 110.31949 * 336.21843 * 4 2 1 25 25 H 1.00894 * 110.99856 * 177.38604 * 6 5 4 26 26 H 1.00894 * 110.99586 * 301.33920 * 6 5 4 27 27 H 0.97004 * 120.00163 * 5.37359 * 10 9 7 28 28 H 1.08997 * 110.40895 * 142.63244 * 15 5 4 29 29 H 1.09001 * 110.41091 * 264.95998 * 15 5 4 30 30 H 1.09006 * 115.54995 * 274.20060 * 17 16 15 31 31 H 1.09000 * 117.50053 * 359.97438 * 18 17 16 32 32 H 1.09001 * 117.49710 * 145.01577 * 18 17 16 33 33 H 1.09002 * 117.49405 * 214.97652 * 19 17 16 34 34 H 1.08993 * 117.50059 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0710 -0.7751 -1.2206 5 6 3.3210 -1.5161 -0.7031 6 7 3.1485 -2.9686 -0.8392 7 6 4.5466 -1.0627 -1.4538 8 1 5.3464 -0.5613 -0.9292 9 6 4.6466 -1.2880 -2.8103 10 7 3.7263 -1.9949 -3.4292 11 14 6.0895 -0.5895 -3.7692 12 1 6.9786 0.1626 -2.8478 13 1 5.5857 0.3241 -4.8259 14 1 6.8510 -1.6995 -4.3964 15 6 3.4305 -1.1259 0.7866 16 7 2.0487 -0.7442 1.1762 17 6 2.0552 0.1043 2.3753 18 6 1.2814 1.4227 2.3120 19 6 2.8113 1.4321 2.2971 20 1 -0.3634 0.4768 0.9103 21 1 -0.3633 0.5499 -0.8682 22 1 -0.3633 -1.0269 -0.0422 23 1 2.3438 -0.0834 -2.0177 24 1 1.3276 -1.4888 -1.5757 25 1 3.9780 -3.4605 -0.5427 26 1 2.3381 -3.2858 -0.3289 27 1 2.9378 -2.2916 -2.9484 28 1 3.7712 -1.9757 1.3781 29 1 4.1089 -0.2817 0.9096 30 1 2.0679 -0.4269 3.3271 31 1 0.7679 1.6607 1.3805 32 1 0.7849 1.7590 3.2222 33 1 3.3213 1.7745 3.1976 34 1 3.3043 1.6758 1.3561 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382840.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:10 Heat of formation + Delta-G solvation = 36.200277 kcal Electronic energy + Delta-G solvation = -14891.140370 eV Core-core repulsion = 12631.708685 eV Total energy + Delta-G solvation = -2259.431685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56221 -36.08168 -32.93564 -31.24117 -30.08718 -27.22466 -25.19187 -23.77001 -22.15515 -21.74596 -19.21639 -18.74812 -16.93265 -16.07599 -14.85067 -14.23253 -14.08450 -13.85266 -13.56865 -12.79485 -12.66723 -12.47501 -11.70940 -11.47690 -11.28592 -11.06766 -10.80766 -10.69350 -10.41445 -10.19395 -10.12094 -10.04774 -9.88257 -9.79267 -8.43445 -8.24927 -7.86772 -7.31929 -6.08129 -3.94843 3.48622 3.51524 3.64685 3.96704 4.48495 4.63943 5.01118 5.12892 5.13887 5.45785 5.50557 5.63520 5.74454 5.80816 5.95932 6.07060 6.13430 6.18861 6.23243 6.30009 6.34041 6.49434 6.63059 6.66330 6.89662 7.03545 7.38273 7.44319 7.63863 8.12945 8.42442 8.76400 8.90928 9.17263 9.89598 11.30125 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.010405 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.205329 B = 2690.315055 C = 2859.961861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 H 0.047 0.953 4 C -0.098 4.098 5 C 0.235 3.765 6 N -0.825 5.825 7 C -0.612 4.612 8 H 0.044 0.956 9 C 0.038 3.962 10 N -0.892 5.892 11 Si 1.063 2.937 12 H -0.293 1.293 13 H -0.290 1.290 14 H -0.289 1.289 15 C 0.015 3.985 16 N -0.480 5.480 17 C 0.017 3.983 18 C -0.193 4.193 19 C -0.218 4.218 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.326 0.674 26 H 0.306 0.694 27 H 0.298 0.702 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 4.659 8.738 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.057 4.057 3 H 0.065 0.935 4 C -0.137 4.137 5 C 0.143 3.857 6 N -0.353 5.353 7 C -0.651 4.651 8 H 0.062 0.938 9 C -0.172 4.172 10 N -0.527 5.527 11 Si 0.894 3.106 12 H -0.219 1.219 13 H -0.216 1.216 14 H -0.215 1.215 15 C -0.114 4.114 16 N -0.202 5.202 17 C -0.093 4.093 18 C -0.230 4.230 19 C -0.257 4.257 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.883 4.335 6.574 8.780 hybrid contribution 0.043 0.793 2.586 2.705 sum -3.841 5.128 9.160 11.178 Atomic orbital electron populations 1.21894 0.94996 1.02081 1.00645 1.22736 0.94761 0.96400 0.91771 0.93510 1.22524 0.97726 0.98366 0.95081 1.19245 0.94008 0.85009 0.87402 1.59260 1.06362 1.06258 1.63398 1.21760 1.04081 1.44011 0.95224 0.93773 1.25509 1.02186 0.94449 0.95094 1.70453 1.10660 1.29444 1.42117 0.83649 0.75423 0.76138 0.75439 1.21938 1.21610 1.21544 1.24063 0.87678 0.99429 1.00251 1.65377 1.19491 1.34006 1.01374 1.22966 1.03249 0.86459 0.96669 1.23453 0.94576 1.01360 1.03646 1.23377 0.94462 1.04529 1.03303 0.92758 0.92880 0.92208 0.91426 0.92623 0.86147 0.88282 0.88789 0.92467 0.93812 0.86686 0.87478 0.89073 0.89162 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.80 37.16 0.33 -1.91 16 2 C 0.05 0.98 2.23 -66.08 -0.15 0.83 16 3 H 0.05 0.91 5.66 -51.92 -0.29 0.62 16 4 C -0.10 -2.24 4.59 -25.35 -0.12 -2.35 16 5 C 0.24 5.62 0.74 -131.37 -0.10 5.52 16 6 N -0.83 -19.14 7.17 0.93 0.01 -19.13 16 7 C -0.61 -16.72 7.96 -34.44 -0.27 -17.00 16 8 H 0.04 1.23 7.57 -52.49 -0.40 0.84 16 9 C 0.04 1.07 5.02 -17.82 -0.09 0.98 16 10 N -0.89 -26.43 13.31 55.43 0.74 -25.69 16 11 Si 1.06 25.23 29.91 -169.99 -5.08 20.15 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.02 0.32 5.63 -2.18 -0.01 0.31 16 16 N -0.48 -8.97 5.33 -214.25 -1.14 -10.11 16 17 C 0.02 0.26 6.31 -67.71 -0.43 -0.16 16 18 C -0.19 -2.68 8.66 -26.73 -0.23 -2.91 16 19 C -0.22 -3.27 8.99 -26.73 -0.24 -3.51 16 20 H 0.05 0.78 5.78 -51.93 -0.30 0.48 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 23 H 0.07 1.72 7.46 -51.93 -0.39 1.33 16 24 H 0.06 1.30 7.53 -51.93 -0.39 0.90 16 25 H 0.33 7.47 8.99 -39.29 -0.35 7.11 16 26 H 0.31 6.50 8.99 -39.30 -0.35 6.15 16 27 H 0.30 8.77 5.32 -40.82 -0.22 8.55 16 28 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 29 H 0.04 0.97 6.35 -51.93 -0.33 0.64 16 30 H 0.12 1.69 8.14 -51.93 -0.42 1.26 16 31 H 0.11 1.54 4.56 -51.93 -0.24 1.30 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.65 6.86 -51.93 -0.36 1.30 16 LS Contribution 259.76 15.07 3.91 3.91 Total: -1.00 -28.72 259.76 -7.82 -36.54 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -4.94 Total: 14.53 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.31 Total: -20.20 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.40 Total: -54.94 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.72 -7.82 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382840.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.743 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds