Wall clock time and date at job start Mon Mar 30 2020 03:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 110.36531 * 2 1 4 4 C 1.54383 * 110.51456 * 237.58580 * 2 1 3 5 5 C 1.54255 * 105.06151 * 217.31733 * 4 2 1 6 6 N 1.46901 * 110.41010 * 118.93944 * 5 4 2 7 7 C 1.50702 * 110.32273 * 241.10589 * 5 4 2 8 8 H 1.07998 * 120.00247 * 116.82316 * 7 5 4 9 9 C 1.37882 * 119.99764 * 296.81997 * 7 5 4 10 10 N 1.31517 * 119.99964 * 354.36459 * 9 7 5 11 11 Si 1.86794 * 120.00130 * 174.37027 * 9 7 5 12 12 H 1.48500 * 109.47212 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47003 * 240.00058 * 11 9 7 14 14 H 1.48500 * 109.47485 * 119.99676 * 11 9 7 15 15 C 1.54381 * 105.06052 * 359.97438 * 5 4 2 16 16 N 1.48557 * 104.59475 * 23.85344 * 15 5 4 17 17 C 1.46900 * 110.99736 * 200.96244 * 16 15 5 18 18 C 1.53003 * 117.49820 * 128.49901 * 17 16 15 19 19 C 1.52999 * 117.50124 * 59.87618 * 17 16 15 20 20 H 1.08998 * 109.47367 * 297.64334 * 1 2 3 21 21 H 1.09004 * 109.47115 * 57.64774 * 1 2 3 22 22 H 1.09007 * 109.46816 * 177.64605 * 1 2 3 23 23 H 1.09002 * 110.32213 * 98.41669 * 4 2 1 24 24 H 1.09003 * 110.31949 * 336.21843 * 4 2 1 25 25 H 1.00894 * 110.99856 * 177.38604 * 6 5 4 26 26 H 1.00894 * 110.99586 * 301.33920 * 6 5 4 27 27 H 0.97004 * 120.00163 * 5.37359 * 10 9 7 28 28 H 1.08997 * 110.40895 * 142.63244 * 15 5 4 29 29 H 1.09001 * 110.41091 * 264.95998 * 15 5 4 30 30 H 1.09006 * 115.54995 * 274.20060 * 17 16 15 31 31 H 1.09000 * 117.50053 * 359.97438 * 18 17 16 32 32 H 1.09001 * 117.49710 * 145.01577 * 18 17 16 33 33 H 1.09002 * 117.49405 * 214.97652 * 19 17 16 34 34 H 1.08993 * 117.50059 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0710 -0.7751 -1.2206 5 6 3.3210 -1.5161 -0.7031 6 7 3.1485 -2.9686 -0.8392 7 6 4.5466 -1.0627 -1.4538 8 1 5.3464 -0.5613 -0.9292 9 6 4.6466 -1.2880 -2.8103 10 7 3.7263 -1.9949 -3.4292 11 14 6.0895 -0.5895 -3.7692 12 1 6.9786 0.1626 -2.8478 13 1 5.5857 0.3241 -4.8259 14 1 6.8510 -1.6995 -4.3964 15 6 3.4305 -1.1259 0.7866 16 7 2.0487 -0.7442 1.1762 17 6 2.0552 0.1043 2.3753 18 6 1.2814 1.4227 2.3120 19 6 2.8113 1.4321 2.2971 20 1 -0.3634 0.4768 0.9103 21 1 -0.3633 0.5499 -0.8682 22 1 -0.3633 -1.0269 -0.0422 23 1 2.3438 -0.0834 -2.0177 24 1 1.3276 -1.4888 -1.5757 25 1 3.9780 -3.4605 -0.5427 26 1 2.3381 -3.2858 -0.3289 27 1 2.9378 -2.2916 -2.9484 28 1 3.7712 -1.9757 1.3781 29 1 4.1089 -0.2817 0.9096 30 1 2.0679 -0.4269 3.3271 31 1 0.7679 1.6607 1.3805 32 1 0.7849 1.7590 3.2222 33 1 3.3213 1.7745 3.1976 34 1 3.3043 1.6758 1.3561 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260382840.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:09 Heat of formation + Delta-G solvation = 15.592772 kcal Electronic energy + Delta-G solvation = -14892.033979 eV Core-core repulsion = 12631.708685 eV Total energy + Delta-G solvation = -2260.325294 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07526 -37.67884 -34.66399 -33.06661 -31.72034 -29.01463 -27.01849 -25.59008 -23.35389 -23.15872 -21.09644 -20.24857 -18.75102 -17.65215 -16.30588 -15.95239 -15.82692 -15.62075 -15.31163 -14.44808 -14.14115 -13.99815 -13.44790 -13.11567 -12.89533 -12.63152 -12.45082 -12.20082 -11.97039 -11.93443 -11.89224 -11.73911 -11.46765 -11.10743 -10.44369 -10.37752 -9.38808 -9.19930 -8.26178 -6.16745 1.54307 1.62270 1.77552 2.61727 2.75002 3.09270 3.35858 3.68223 3.92211 3.94260 4.01758 4.06930 4.21249 4.38925 4.52775 4.65323 4.66027 4.76575 4.81835 4.89297 4.93619 5.07339 5.08288 5.15527 5.15798 5.41590 5.51982 5.77950 6.05753 6.18048 6.34326 6.82974 6.85968 7.17371 7.74576 9.08203 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.010405 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.205329 B = 2690.315055 C = 2859.961861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.091 4.091 5 C 0.224 3.776 6 N -0.831 5.831 7 C -0.621 4.621 8 H 0.030 0.970 9 C -0.007 4.007 10 N -0.919 5.919 11 Si 1.106 2.894 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.027 3.973 16 N -0.477 5.477 17 C -0.004 4.004 18 C -0.171 4.171 19 C -0.220 4.220 20 H 0.078 0.922 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.032 0.968 24 H 0.046 0.954 25 H 0.326 0.674 26 H 0.319 0.681 27 H 0.289 0.711 28 H 0.061 0.939 29 H 0.028 0.972 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 5.521 10.241 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 H 0.059 0.941 4 C -0.131 4.131 5 C 0.132 3.868 6 N -0.359 5.359 7 C -0.660 4.660 8 H 0.048 0.952 9 C -0.212 4.212 10 N -0.555 5.555 11 Si 0.931 3.069 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.103 4.103 16 N -0.200 5.200 17 C -0.114 4.114 18 C -0.208 4.208 19 C -0.259 4.259 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.138 0.862 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.151 0.849 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.588 5.202 8.098 10.662 hybrid contribution 0.260 0.538 2.173 2.253 sum -4.328 5.740 10.270 12.536 Atomic orbital electron populations 1.21839 0.92283 1.02344 1.02356 1.22653 0.96773 0.95298 0.90195 0.94057 1.22324 0.97212 0.97685 0.95835 1.19252 0.93211 0.85382 0.88977 1.59113 1.06876 1.05953 1.63971 1.22064 1.04848 1.43429 0.95679 0.95174 1.26709 1.03799 0.94179 0.96474 1.70554 1.11266 1.31371 1.42279 0.83072 0.73203 0.75897 0.74723 1.20689 1.20956 1.20990 1.23767 0.89127 0.98932 0.98439 1.65359 1.17386 1.35136 1.02111 1.23154 1.05397 0.87012 0.95803 1.23543 0.93648 0.98699 1.04929 1.23343 0.95720 1.03902 1.02938 0.90366 0.91938 0.92594 0.94900 0.93549 0.86183 0.86941 0.89746 0.92086 0.95390 0.84907 0.87947 0.85859 0.86986 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 8.80 71.98 0.63 -3.29 16 2 C 0.06 2.20 2.23 45.07 0.10 2.30 16 3 H 0.04 1.59 5.66 -2.38 -0.01 1.57 16 4 C -0.09 -4.25 4.59 31.49 0.14 -4.10 16 5 C 0.22 10.83 0.74 3.68 0.00 10.84 16 6 N -0.83 -38.92 7.17 -150.97 -1.08 -40.00 16 7 C -0.62 -34.63 7.96 25.60 0.20 -34.43 16 8 H 0.03 1.72 7.57 -2.91 -0.02 1.70 16 9 C -0.01 -0.37 5.02 84.66 0.42 0.05 16 10 N -0.92 -55.41 13.31 21.45 0.29 -55.13 16 11 Si 1.11 51.29 29.91 68.60 2.05 53.34 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.03 1.14 5.63 86.45 0.49 1.63 16 16 N -0.48 -17.16 5.33 -831.77 -4.43 -21.59 16 17 C 0.00 -0.12 6.31 44.92 0.28 0.16 16 18 C -0.17 -4.12 8.66 30.60 0.26 -3.86 16 19 C -0.22 -6.13 8.99 30.59 0.28 -5.85 16 20 H 0.08 1.98 5.78 -2.39 -0.01 1.97 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.05 1.73 8.10 -2.38 -0.02 1.71 16 23 H 0.03 1.71 7.46 -2.39 -0.02 1.69 16 24 H 0.05 2.20 7.53 -2.39 -0.02 2.18 16 25 H 0.33 15.07 8.99 -89.70 -0.81 14.27 16 26 H 0.32 13.48 8.99 -89.70 -0.81 12.67 16 27 H 0.29 17.45 5.32 -92.70 -0.49 16.95 16 28 H 0.06 2.49 8.05 -2.39 -0.02 2.47 16 29 H 0.03 1.25 6.35 -2.39 -0.02 1.23 16 30 H 0.13 3.43 8.14 -2.38 -0.02 3.41 16 31 H 0.10 2.60 4.56 -2.39 -0.01 2.59 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.07 2.32 6.86 -2.39 -0.02 2.30 16 Total: -1.00 -61.98 259.76 -0.59 -62.57 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -0.23 Total: 37.36 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 2.82 Total: -36.55 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -5.23 Total: -116.72 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -61.98 -0.59 -62.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382840.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.163 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds