Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 108.69122 * 2 1 4 4 C 1.51963 * 108.72595 * 241.79602 * 2 1 3 5 5 C 1.52977 * 110.73156 * 173.22564 * 4 2 1 6 6 N 1.47114 * 108.78748 * 86.57535 * 5 4 2 7 7 C 1.27809 * 120.57122 * 287.30761 * 6 5 4 8 8 N 1.36997 * 119.77816 * 180.11884 * 7 6 5 9 9 C 1.46497 * 119.99789 * 359.97438 * 8 7 6 10 10 C 1.50700 * 109.47128 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 59.99902 * 14 12 10 16 16 H 1.48495 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99897 * 14 12 10 18 18 C 1.51303 * 120.44930 * 0.38406 * 7 6 5 19 19 C 1.51971 * 108.63667 * 118.15217 * 2 1 3 20 20 H 1.09002 * 109.47114 * 178.20537 * 1 2 3 21 21 H 1.09001 * 109.46905 * 298.20564 * 1 2 3 22 22 H 1.09001 * 109.47191 * 58.20182 * 1 2 3 23 23 H 1.09003 * 109.22692 * 52.90711 * 4 2 1 24 24 H 1.08995 * 109.19247 * 293.52996 * 4 2 1 25 25 H 1.08996 * 109.58499 * 326.78876 * 5 4 2 26 26 H 1.08998 * 109.58458 * 206.36819 * 5 4 2 27 27 H 0.97000 * 120.00470 * 180.02562 * 8 7 6 28 28 H 1.09004 * 109.47268 * 60.00443 * 9 8 7 29 29 H 1.08997 * 109.47471 * 300.00851 * 9 8 7 30 30 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.61544 * 191.65235 * 18 7 6 32 32 H 1.08997 * 109.62022 * 312.18177 * 18 7 6 33 33 H 1.09002 * 109.25573 * 306.85357 * 19 2 1 34 34 H 1.09010 * 109.25686 * 66.31927 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8793 1.0326 0.0000 4 6 2.0179 -0.6802 -1.2683 5 6 3.5372 -0.5583 -1.3981 6 7 4.1658 -1.6699 -0.6678 7 6 4.1750 -1.6855 0.6101 8 7 4.7671 -2.7277 1.2736 9 6 5.3864 -3.8195 0.5184 10 6 5.9605 -4.8308 1.4768 11 1 5.8724 -4.6760 2.5420 12 6 6.5983 -5.9539 0.9939 13 7 6.7008 -6.1451 -0.3033 14 14 7.3093 -7.2078 2.1819 15 1 6.2231 -7.7516 3.0363 16 1 7.9372 -8.3145 1.4163 17 1 8.3321 -6.5545 3.0376 18 6 3.5310 -0.5639 1.3953 19 6 2.0156 -0.6794 1.2697 20 1 -0.3633 -1.0272 -0.0322 21 1 -0.3633 0.4857 0.9057 22 1 -0.3634 0.5415 -0.8734 23 1 1.5452 -0.2115 -2.1315 24 1 1.7437 -1.7346 -1.2376 25 1 3.8653 0.3901 -0.9727 26 1 3.8191 -0.6063 -2.4499 27 1 4.7756 -2.7430 2.2435 28 1 6.1831 -3.4207 -0.1097 29 1 4.6352 -4.2994 -0.1088 30 1 7.1498 -6.9350 -0.6430 31 1 3.8151 -0.6418 2.4448 32 1 3.8569 0.3965 0.9958 33 1 1.5457 -0.2072 2.1324 34 1 1.7389 -1.7334 1.2418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -3.165414 kcal Electronic energy + Delta-G solvation = -13969.013345 eV Core-core repulsion = 11707.874635 eV Total energy + Delta-G solvation = -2261.138710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.96809 -35.74869 -33.25846 -32.28962 -31.01914 -28.06433 -26.72077 -24.00621 -23.19275 -21.88390 -20.00179 -18.14250 -16.63255 -15.68373 -15.20171 -14.58444 -14.22563 -14.10635 -13.89748 -12.96692 -12.72476 -12.65143 -12.17326 -11.91828 -11.76246 -11.63981 -11.29274 -11.07088 -10.86401 -10.71557 -10.44276 -10.26435 -10.10230 -9.66519 -9.22536 -8.45221 -8.01325 -6.90627 -6.04870 -4.10192 3.31321 3.35877 3.37523 3.44136 4.31701 4.54690 4.73357 4.86711 4.93163 5.14711 5.30733 5.45539 5.57202 5.65300 5.69347 5.72622 5.79183 5.89037 5.98073 6.06043 6.20503 6.22972 6.32401 6.41562 6.57495 6.67508 7.53279 7.78138 7.79275 8.10129 8.23112 8.79974 8.93975 9.42803 9.57211 11.05263 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056321 B = 0.006393 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.030750 B = 4378.670744 C = 4557.963230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.063 0.937 4 C -0.127 4.127 5 C 0.074 3.926 6 N -0.625 5.625 7 C 0.398 3.602 8 N -0.707 5.707 9 C 0.266 3.734 10 C -0.541 4.541 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.887 5.887 14 Si 0.900 3.100 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.126 4.126 19 C -0.105 4.105 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.071 0.929 27 H 0.391 0.609 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 11.767 2.586 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.082 0.918 4 C -0.166 4.166 5 C -0.057 4.057 6 N -0.356 5.356 7 C 0.117 3.883 8 N -0.341 5.341 9 C 0.145 3.855 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.727 3.273 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.168 4.168 19 C -0.143 4.143 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.225 0.775 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.054 11.086 1.535 14.395 hybrid contribution 0.050 -0.086 1.387 1.391 sum -9.003 10.999 2.923 14.512 Atomic orbital electron populations 1.21896 0.95577 1.01797 1.01216 1.20853 0.95497 0.99561 0.95113 0.91844 1.21785 0.96839 1.01478 0.96462 1.21903 0.92011 0.92603 0.99150 1.71407 1.30230 1.27046 1.06889 1.21251 0.89101 0.87738 0.90162 1.44907 1.59247 1.21855 1.08077 1.18896 0.92594 0.82612 0.91388 1.21289 1.37572 1.06086 0.93043 0.92324 1.24923 0.95959 0.97894 0.95217 1.69980 1.42506 1.28135 1.11816 0.86542 0.79259 0.80725 0.80732 1.20209 1.21157 1.20192 1.21492 0.95992 0.98465 1.00870 1.21206 0.94189 1.01716 0.97232 0.92703 0.92965 0.92903 0.92168 0.91398 0.94674 0.91060 0.77509 0.96001 0.95999 0.92622 0.90907 0.90261 0.91655 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.05 37.16 0.34 -1.18 16 2 C -0.09 -1.11 2.25 -91.67 -0.21 -1.31 16 3 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 4 C -0.13 -1.80 4.99 -27.27 -0.14 -1.94 16 5 C 0.07 1.24 6.44 -3.72 -0.02 1.21 16 6 N -0.62 -13.20 9.62 -57.73 -0.56 -13.75 16 7 C 0.40 7.76 6.81 -155.48 -1.06 6.70 16 8 N -0.71 -15.36 5.63 -59.34 -0.33 -15.70 16 9 C 0.27 7.23 5.39 -5.20 -0.03 7.20 16 10 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 11 H 0.06 1.54 7.60 -52.49 -0.40 1.15 16 12 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.13 -1.81 5.50 -27.84 -0.15 -1.96 16 19 C -0.10 -1.34 4.90 -27.51 -0.13 -1.48 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 24 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 25 H 0.04 0.53 6.56 -51.93 -0.34 0.19 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.39 7.56 8.24 -40.82 -0.34 7.23 16 28 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 32 H 0.08 1.07 6.62 -51.93 -0.34 0.72 16 33 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.07 0.99 7.87 -51.92 -0.41 0.58 16 LS Contribution 273.67 15.07 4.12 4.12 Total: -1.00 -30.81 273.67 -8.46 -39.27 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.59 Total: 2.24 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.82 Total: -6.53 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.15 Total: -55.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.81 -8.46 -39.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.106 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds