Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 108.69122 * 2 1 4 4 C 1.51963 * 108.72595 * 241.79602 * 2 1 3 5 5 C 1.52977 * 110.73156 * 173.22564 * 4 2 1 6 6 N 1.47114 * 108.78748 * 86.57535 * 5 4 2 7 7 C 1.27809 * 120.57122 * 287.30761 * 6 5 4 8 8 N 1.36997 * 119.77816 * 180.11884 * 7 6 5 9 9 C 1.46497 * 119.99789 * 359.97438 * 8 7 6 10 10 C 1.50700 * 109.47128 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99988 * 0.02562 * 10 9 8 12 12 C 1.37885 * 120.00047 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.72305 * 12 10 9 14 14 Si 1.86795 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 59.99902 * 14 12 10 16 16 H 1.48495 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47290 * 299.99897 * 14 12 10 18 18 C 1.51303 * 120.44930 * 0.38406 * 7 6 5 19 19 C 1.51971 * 108.63667 * 118.15217 * 2 1 3 20 20 H 1.09002 * 109.47114 * 178.20537 * 1 2 3 21 21 H 1.09001 * 109.46905 * 298.20564 * 1 2 3 22 22 H 1.09001 * 109.47191 * 58.20182 * 1 2 3 23 23 H 1.09003 * 109.22692 * 52.90711 * 4 2 1 24 24 H 1.08995 * 109.19247 * 293.52996 * 4 2 1 25 25 H 1.08996 * 109.58499 * 326.78876 * 5 4 2 26 26 H 1.08998 * 109.58458 * 206.36819 * 5 4 2 27 27 H 0.97000 * 120.00470 * 180.02562 * 8 7 6 28 28 H 1.09004 * 109.47268 * 60.00443 * 9 8 7 29 29 H 1.08997 * 109.47471 * 300.00851 * 9 8 7 30 30 H 0.97000 * 119.99468 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.61544 * 191.65235 * 18 7 6 32 32 H 1.08997 * 109.62022 * 312.18177 * 18 7 6 33 33 H 1.09002 * 109.25573 * 306.85357 * 19 2 1 34 34 H 1.09010 * 109.25686 * 66.31927 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8793 1.0326 0.0000 4 6 2.0179 -0.6802 -1.2683 5 6 3.5372 -0.5583 -1.3981 6 7 4.1658 -1.6699 -0.6678 7 6 4.1750 -1.6855 0.6101 8 7 4.7671 -2.7277 1.2736 9 6 5.3864 -3.8195 0.5184 10 6 5.9605 -4.8308 1.4768 11 1 5.8724 -4.6760 2.5420 12 6 6.5983 -5.9539 0.9939 13 7 6.7008 -6.1451 -0.3033 14 14 7.3093 -7.2078 2.1819 15 1 6.2231 -7.7516 3.0363 16 1 7.9372 -8.3145 1.4163 17 1 8.3321 -6.5545 3.0376 18 6 3.5310 -0.5639 1.3953 19 6 2.0156 -0.6794 1.2697 20 1 -0.3633 -1.0272 -0.0322 21 1 -0.3633 0.4857 0.9057 22 1 -0.3634 0.5415 -0.8734 23 1 1.5452 -0.2115 -2.1315 24 1 1.7437 -1.7346 -1.2376 25 1 3.8653 0.3901 -0.9727 26 1 3.8191 -0.6063 -2.4499 27 1 4.7756 -2.7430 2.2435 28 1 6.1831 -3.4207 -0.1097 29 1 4.6352 -4.2994 -0.1088 30 1 7.1498 -6.9350 -0.6430 31 1 3.8151 -0.6418 2.4448 32 1 3.8569 0.3965 0.9958 33 1 1.5457 -0.2072 2.1324 34 1 1.7389 -1.7334 1.2418 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = -24.052624 kcal Electronic energy + Delta-G solvation = -13969.919083 eV Core-core repulsion = 11707.874635 eV Total energy + Delta-G solvation = -2262.044447 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.27227 -37.26172 -35.09691 -33.91649 -32.43344 -29.37473 -28.60658 -25.41133 -24.50144 -23.70476 -21.03794 -19.82534 -18.49120 -17.27571 -16.73871 -16.30299 -15.54684 -15.45807 -15.05815 -14.55097 -14.36868 -13.99338 -13.81258 -13.55455 -12.88021 -12.78579 -12.73675 -12.65477 -12.45012 -12.22998 -12.01568 -11.46807 -11.38614 -11.30436 -11.16027 -10.59095 -9.49020 -8.66727 -8.23562 -6.38981 1.42508 1.46964 1.54955 1.94245 2.37818 2.87256 3.10370 3.61726 3.83867 3.92004 4.02423 4.31725 4.46256 4.50594 4.60791 4.74120 4.81249 4.85213 4.90483 4.97746 5.08629 5.21139 5.24763 5.30718 5.34771 5.37846 5.47173 5.52438 5.66297 5.94881 6.41343 6.80527 7.06813 7.32114 7.92513 8.88338 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.056321 B = 0.006393 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.030750 B = 4378.670744 C = 4557.963230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.083 0.917 4 C -0.120 4.120 5 C 0.072 3.928 6 N -0.678 5.678 7 C 0.389 3.611 8 N -0.711 5.711 9 C 0.292 3.708 10 C -0.558 4.558 11 H 0.076 0.924 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.982 3.018 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.263 1.263 18 C -0.115 4.115 19 C -0.102 4.102 20 H 0.042 0.958 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.404 0.596 28 H -0.021 1.021 29 H -0.022 1.022 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 13.106 4.648 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.158 4.158 5 C -0.058 4.058 6 N -0.408 5.408 7 C 0.109 3.891 8 N -0.348 5.348 9 C 0.168 3.832 10 C -0.596 4.596 11 H 0.094 0.906 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.805 3.195 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.156 4.156 19 C -0.140 4.140 20 H 0.061 0.939 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.240 0.760 28 H -0.003 1.003 29 H -0.004 1.004 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.894 12.473 3.606 16.324 hybrid contribution 0.283 -0.448 0.633 0.826 sum -9.611 12.025 4.239 15.967 Atomic orbital electron populations 1.21853 0.93980 1.01488 1.02730 1.20865 0.96823 0.99968 0.93304 0.89844 1.21709 0.95030 1.00050 0.99053 1.21989 0.93561 0.92031 0.98257 1.71253 1.31014 1.29784 1.08774 1.21823 0.88486 0.88241 0.90542 1.44622 1.60083 1.21649 1.08432 1.18197 0.90188 0.83835 0.90972 1.21692 1.37556 1.06412 0.93909 0.90567 1.26030 0.96134 1.00306 0.97111 1.70151 1.43480 1.29040 1.14358 0.85263 0.78729 0.77426 0.78100 1.18865 1.20984 1.18770 1.21497 0.96481 0.96377 1.01243 1.21232 0.93111 1.00629 0.99053 0.93923 0.91119 0.91794 0.90016 0.94624 0.92630 0.91856 0.76036 1.00306 1.00432 0.92461 0.88778 0.88682 0.88354 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.05 71.98 0.65 -1.86 16 2 C -0.09 -1.95 2.25 -11.47 -0.03 -1.97 16 3 H 0.08 1.51 7.92 -2.38 -0.02 1.49 16 4 C -0.12 -3.29 4.99 30.25 0.15 -3.14 16 5 C 0.07 2.37 6.44 86.25 0.56 2.93 16 6 N -0.68 -29.57 9.62 -336.30 -3.23 -32.80 16 7 C 0.39 15.27 6.81 138.45 0.94 16.22 16 8 N -0.71 -31.66 5.63 -341.66 -1.93 -33.59 16 9 C 0.29 16.66 5.39 85.63 0.46 17.12 16 10 C -0.56 -31.79 9.28 25.60 0.24 -31.55 16 11 H 0.08 3.97 7.60 -2.91 -0.02 3.95 16 12 C 0.00 0.19 5.46 84.66 0.46 0.65 16 13 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 14 Si 0.98 43.86 29.54 68.60 2.03 45.88 16 15 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 18 C -0.11 -3.01 5.50 29.87 0.16 -2.84 16 19 C -0.10 -2.35 4.90 30.09 0.15 -2.20 16 20 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 21 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 24 H 0.03 1.20 8.05 -2.39 -0.02 1.18 16 25 H 0.06 1.59 6.56 -2.39 -0.02 1.58 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.40 15.54 8.24 -92.71 -0.76 14.77 16 28 H -0.02 -1.35 8.14 -2.38 -0.02 -1.37 16 29 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 30 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.09 2.08 8.00 -2.39 -0.02 2.06 16 32 H 0.09 2.24 6.62 -2.39 -0.02 2.22 16 33 H 0.10 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.04 1.17 7.87 -2.38 -0.02 1.16 16 Total: -1.00 -70.17 273.67 1.20 -68.96 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.30 Total: 15.97 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 3.75 Total: -6.65 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -4.87 Total: -124.17 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.17 1.20 -68.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.912 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds