Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46500 * 2 1 4 4 C 1.50703 * 109.46783 * 240.00417 * 2 1 3 5 5 H 1.07998 * 119.99455 * 245.45808 * 4 2 1 6 6 C 1.37874 * 120.00133 * 65.45799 * 4 2 1 7 7 N 1.31515 * 120.00157 * 9.55704 * 6 4 2 8 8 Si 1.86802 * 120.00042 * 189.56023 * 6 4 2 9 9 H 1.48494 * 109.46977 * 84.99352 * 8 6 4 10 10 H 1.48497 * 109.46944 * 204.99785 * 8 6 4 11 11 H 1.48501 * 109.46751 * 324.98965 * 8 6 4 12 12 N 1.46498 * 109.47373 * 120.00321 * 2 1 3 13 13 C 1.37001 * 119.99721 * 274.99787 * 12 2 1 14 14 N 1.27806 * 119.77626 * 0.02562 * 13 12 2 15 15 C 1.47117 * 120.56724 * 180.11174 * 14 13 12 16 16 C 1.53005 * 108.78421 * 287.31758 * 15 14 13 17 17 C 1.51962 * 110.72495 * 86.58339 * 16 15 14 18 18 C 1.51982 * 113.24303 * 294.06353 * 17 16 15 19 19 C 1.51302 * 119.77201 * 180.02562 * 13 12 2 20 20 H 1.09004 * 109.47263 * 183.67447 * 1 2 3 21 21 H 1.09002 * 109.47009 * 303.66996 * 1 2 3 22 22 H 1.09001 * 109.47572 * 63.67147 * 1 2 3 23 23 H 0.96998 * 120.00043 * 179.97438 * 7 6 4 24 24 H 0.96994 * 120.00016 * 94.99519 * 12 2 1 25 25 H 1.09002 * 109.58146 * 47.09325 * 15 14 13 26 26 H 1.09004 * 109.58397 * 167.50486 * 15 14 13 27 27 H 1.09002 * 109.23523 * 326.25747 * 16 15 14 28 28 H 1.09002 * 109.18768 * 206.87093 * 16 15 14 29 29 H 1.09007 * 108.72747 * 173.09928 * 17 16 15 30 30 H 1.08994 * 108.73232 * 55.04181 * 17 16 15 31 31 H 1.08995 * 109.25884 * 305.38943 * 18 17 16 32 32 H 1.08996 * 109.22694 * 185.92683 * 18 17 16 33 33 H 1.09004 * 109.61224 * 11.92821 * 19 13 12 34 34 H 1.09000 * 109.61254 * 132.27454 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6370 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.2991 1.0357 -2.5935 8 14 2.1757 -1.1779 -4.0103 9 1 1.0237 -2.0608 -4.3241 10 1 2.4224 -0.2612 -5.1522 11 1 3.3842 -2.0071 -3.7712 12 7 2.0184 -0.6907 1.1961 13 6 2.1493 -0.0072 2.3762 14 7 1.8436 1.2326 2.4289 15 6 1.9798 1.9840 3.6864 16 6 0.8708 1.5454 4.6449 17 6 1.2984 0.3220 5.4384 18 6 1.4856 -0.9162 4.5771 19 6 2.6547 -0.7254 3.6083 20 1 -0.3634 -1.0256 0.0659 21 1 -0.3633 0.5698 0.8553 22 1 -0.3634 0.4558 -0.9210 23 1 1.1321 1.4109 -3.4723 24 1 2.2490 -1.6318 1.1525 25 1 2.9520 1.7756 4.1330 26 1 1.8888 3.0516 3.4858 27 1 -0.0253 1.3065 4.0721 28 1 0.6496 2.3606 5.3339 29 1 0.5406 0.1119 6.1932 30 1 2.2391 0.5431 5.9426 31 1 0.5740 -1.0997 4.0085 32 1 1.6872 -1.7732 5.2196 33 1 3.0576 -1.6979 3.3254 34 1 3.4344 -0.1308 4.0843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260698749.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = 2.584623 kcal Electronic energy + Delta-G solvation = -14265.593375 eV Core-core repulsion = 12004.704005 eV Total energy + Delta-G solvation = -2260.889369 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.71424 -35.63459 -33.05088 -32.10658 -30.84252 -28.10369 -25.63833 -25.02868 -23.28842 -20.56125 -20.31992 -17.99581 -16.62984 -15.59423 -15.43795 -14.58204 -14.21731 -13.68647 -13.40790 -13.17213 -12.52734 -12.25879 -12.04345 -11.87502 -11.47380 -11.23677 -10.99438 -10.82990 -10.64269 -10.58369 -10.35315 -10.23444 -10.02106 -9.49662 -8.89640 -8.35347 -7.93849 -6.88505 -6.02132 -4.06076 3.31314 3.37685 3.39206 3.47994 4.33401 4.56532 4.83045 4.98004 5.07374 5.24972 5.31146 5.54879 5.67622 5.75825 5.78237 5.96517 6.05036 6.14043 6.15969 6.33028 6.39229 6.57497 6.64772 6.96342 7.17007 7.31336 7.70550 7.85190 7.91680 8.21821 8.35864 8.84482 8.98369 9.46559 9.60825 11.06044 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058579 B = 0.007446 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.871328 B = 3759.451051 C = 3954.314203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.275 3.725 3 H 0.059 0.941 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.703 5.703 13 C 0.402 3.598 14 N -0.622 5.622 15 C 0.074 3.926 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.127 4.127 20 H 0.021 0.979 21 H 0.020 0.980 22 H 0.066 0.934 23 H 0.262 0.738 24 H 0.389 0.611 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -2.971 12.771 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.173 3.827 3 H 0.076 0.924 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.337 5.337 13 C 0.121 3.879 14 N -0.353 5.353 15 C -0.057 4.057 16 C -0.171 4.171 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.169 4.169 20 H 0.040 0.960 21 H 0.039 0.961 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.222 0.778 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.308 -1.966 12.052 12.215 hybrid contribution 0.532 -1.306 -0.183 1.422 sum 0.840 -3.272 11.869 12.340 Atomic orbital electron populations 1.21969 0.99622 0.97916 1.00085 1.18585 0.89944 0.94508 0.79649 0.92350 1.21274 1.36608 1.08465 0.90904 0.92476 1.24862 0.95223 0.94611 0.98844 1.69995 1.44301 1.13732 1.23872 0.86600 0.78619 0.80033 0.82638 1.20563 1.21269 1.20039 1.44959 1.69165 1.11643 1.07918 1.21231 0.89937 0.90055 0.86675 1.71423 1.32127 1.07165 1.24547 1.21915 0.95756 0.98725 0.89311 1.21722 1.00171 0.96984 0.98247 1.21217 1.01044 0.95168 0.98051 1.21221 0.98580 0.97618 0.97398 1.21605 0.98590 1.01255 0.95452 0.96030 0.96060 0.91517 0.92795 0.77811 0.94740 0.91127 0.91474 0.92273 0.92597 0.92563 0.91544 0.91789 0.90986 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.37 37.16 0.35 -3.09 16 2 C 0.28 7.13 2.41 -69.08 -0.17 6.96 16 3 H 0.06 1.75 7.46 -51.93 -0.39 1.36 16 4 C -0.53 -14.62 8.66 -34.44 -0.30 -14.91 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.88 5.17 -17.82 -0.09 1.79 16 7 N -0.88 -25.72 12.16 55.43 0.67 -25.05 16 8 Si 0.89 21.19 29.55 -169.99 -5.02 16.17 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.70 -15.01 5.15 -52.83 -0.27 -15.28 16 13 C 0.40 7.77 6.78 -155.48 -1.05 6.71 16 14 N -0.62 -13.03 9.24 -57.71 -0.53 -13.56 16 15 C 0.07 1.24 6.44 -3.70 -0.02 1.21 16 16 C -0.13 -1.88 5.75 -27.26 -0.16 -2.03 16 17 C -0.12 -1.41 5.32 -27.78 -0.15 -1.56 16 18 C -0.11 -1.40 5.68 -27.23 -0.15 -1.55 16 19 C -0.13 -1.83 5.52 -27.57 -0.15 -1.98 16 20 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.82 6.83 -51.93 -0.35 1.46 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.39 7.43 8.44 -40.82 -0.34 7.09 16 25 H 0.03 0.53 6.56 -51.93 -0.34 0.19 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 31 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 34 H 0.08 1.09 6.64 -51.93 -0.34 0.74 16 LS Contribution 271.21 15.07 4.09 4.09 Total: -1.00 -29.75 271.21 -8.47 -38.22 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.50 Total: 3.87 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.90 Total: -8.46 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.13 Total: -53.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.75 -8.47 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698749.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.807 kcal (2) G-P(sol) polarization free energy of solvation -29.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds