Wall clock time and date at job start Mon Mar 30 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46500 * 2 1 4 4 C 1.50703 * 109.46783 * 240.00417 * 2 1 3 5 5 H 1.07998 * 119.99455 * 245.45808 * 4 2 1 6 6 C 1.37874 * 120.00133 * 65.45799 * 4 2 1 7 7 N 1.31515 * 120.00157 * 9.55704 * 6 4 2 8 8 Si 1.86802 * 120.00042 * 189.56023 * 6 4 2 9 9 H 1.48494 * 109.46977 * 84.99352 * 8 6 4 10 10 H 1.48497 * 109.46944 * 204.99785 * 8 6 4 11 11 H 1.48501 * 109.46751 * 324.98965 * 8 6 4 12 12 N 1.46498 * 109.47373 * 120.00321 * 2 1 3 13 13 C 1.37001 * 119.99721 * 274.99787 * 12 2 1 14 14 N 1.27806 * 119.77626 * 0.02562 * 13 12 2 15 15 C 1.47117 * 120.56724 * 180.11174 * 14 13 12 16 16 C 1.53005 * 108.78421 * 287.31758 * 15 14 13 17 17 C 1.51962 * 110.72495 * 86.58339 * 16 15 14 18 18 C 1.51982 * 113.24303 * 294.06353 * 17 16 15 19 19 C 1.51302 * 119.77201 * 180.02562 * 13 12 2 20 20 H 1.09004 * 109.47263 * 183.67447 * 1 2 3 21 21 H 1.09002 * 109.47009 * 303.66996 * 1 2 3 22 22 H 1.09001 * 109.47572 * 63.67147 * 1 2 3 23 23 H 0.96998 * 120.00043 * 179.97438 * 7 6 4 24 24 H 0.96994 * 120.00016 * 94.99519 * 12 2 1 25 25 H 1.09002 * 109.58146 * 47.09325 * 15 14 13 26 26 H 1.09004 * 109.58397 * 167.50486 * 15 14 13 27 27 H 1.09002 * 109.23523 * 326.25747 * 16 15 14 28 28 H 1.09002 * 109.18768 * 206.87093 * 16 15 14 29 29 H 1.09007 * 108.72747 * 173.09928 * 17 16 15 30 30 H 1.08994 * 108.73232 * 55.04181 * 17 16 15 31 31 H 1.08995 * 109.25884 * 305.38943 * 18 17 16 32 32 H 1.08996 * 109.22694 * 185.92683 * 18 17 16 33 33 H 1.09004 * 109.61224 * 11.92821 * 19 13 12 34 34 H 1.09000 * 109.61254 * 132.27454 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5785 -1.6370 -1.1339 6 6 1.7944 -0.1773 -2.4796 7 7 1.2991 1.0357 -2.5935 8 14 2.1757 -1.1779 -4.0103 9 1 1.0237 -2.0608 -4.3241 10 1 2.4224 -0.2612 -5.1522 11 1 3.3842 -2.0071 -3.7712 12 7 2.0184 -0.6907 1.1961 13 6 2.1493 -0.0072 2.3762 14 7 1.8436 1.2326 2.4289 15 6 1.9798 1.9840 3.6864 16 6 0.8708 1.5454 4.6449 17 6 1.2984 0.3220 5.4384 18 6 1.4856 -0.9162 4.5771 19 6 2.6547 -0.7254 3.6083 20 1 -0.3634 -1.0256 0.0659 21 1 -0.3633 0.5698 0.8553 22 1 -0.3634 0.4558 -0.9210 23 1 1.1321 1.4109 -3.4723 24 1 2.2490 -1.6318 1.1525 25 1 2.9520 1.7756 4.1330 26 1 1.8888 3.0516 3.4858 27 1 -0.0253 1.3065 4.0721 28 1 0.6496 2.3606 5.3339 29 1 0.5406 0.1119 6.1932 30 1 2.2391 0.5431 5.9426 31 1 0.5740 -1.0997 4.0085 32 1 1.6872 -1.7732 5.2196 33 1 3.0576 -1.6979 3.3254 34 1 3.4344 -0.1308 4.0843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260698749.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:01 Heat of formation + Delta-G solvation = -16.701708 kcal Electronic energy + Delta-G solvation = -14266.429693 eV Core-core repulsion = 12004.704005 eV Total energy + Delta-G solvation = -2261.725687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.07074 -37.28127 -34.84596 -33.46646 -32.46474 -29.87024 -27.24829 -26.77847 -24.64214 -22.45700 -21.38629 -19.62692 -18.45564 -17.14844 -16.92432 -16.30694 -15.58345 -15.10862 -14.91933 -14.44678 -14.15949 -13.78631 -13.63703 -13.42641 -13.15761 -12.82602 -12.59271 -12.56478 -12.35353 -12.20920 -11.82604 -11.61462 -11.41086 -11.05947 -10.94923 -10.46832 -9.39877 -8.56373 -8.13386 -6.25951 1.44175 1.45675 1.54961 2.02268 2.41683 2.93744 3.17291 3.68879 3.95836 4.04761 4.10247 4.37195 4.51792 4.58372 4.68599 4.83755 4.88524 4.93224 4.98267 5.10103 5.17037 5.20651 5.23101 5.30689 5.33983 5.47099 5.57614 5.82565 5.85736 6.15651 6.55304 6.91753 7.16385 7.43210 8.00380 8.94651 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058579 B = 0.007446 C = 0.007079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.871328 B = 3759.451051 C = 3954.314203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.287 3.713 3 H 0.009 0.991 4 C -0.548 4.548 5 H 0.066 0.934 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.709 5.709 13 C 0.392 3.608 14 N -0.672 5.672 15 C 0.071 3.929 16 C -0.126 4.126 17 C -0.116 4.116 18 C -0.106 4.106 19 C -0.117 4.117 20 H 0.033 0.967 21 H 0.018 0.982 22 H 0.039 0.961 23 H 0.263 0.737 24 H 0.400 0.600 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -4.675 14.225 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.182 3.818 3 H 0.027 0.973 4 C -0.587 4.587 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.345 5.345 13 C 0.113 3.887 14 N -0.403 5.403 15 C -0.059 4.059 16 C -0.165 4.165 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.159 4.159 20 H 0.052 0.948 21 H 0.037 0.963 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.235 0.765 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.037 -3.680 13.549 14.078 hybrid contribution 0.312 -0.684 -0.587 0.954 sum 1.349 -4.364 12.962 13.743 Atomic orbital electron populations 1.21759 0.99508 0.98183 0.98456 1.18084 0.89912 0.92308 0.81461 0.97322 1.21641 1.36586 1.08746 0.91695 0.91611 1.25758 0.95042 0.95484 1.02200 1.70145 1.45528 1.15477 1.24581 0.85482 0.78857 0.78407 0.78322 1.19711 1.21294 1.18931 1.44694 1.70063 1.12135 1.07566 1.21744 0.89425 0.90176 0.87398 1.71277 1.32517 1.08795 1.27669 1.21989 0.97636 0.97767 0.88537 1.21648 0.97864 0.99055 0.97912 1.21222 1.02593 0.93600 0.97901 1.21239 0.96743 0.99251 0.97251 1.21612 0.99394 1.01685 0.93165 0.94752 0.96336 0.94187 0.92826 0.76511 0.93090 0.92104 0.94309 0.90110 0.90604 0.90704 0.93723 0.88544 0.89092 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 9.37 71.98 0.67 -5.53 16 2 C 0.29 15.23 2.41 44.25 0.11 15.34 16 3 H 0.01 0.56 7.46 -2.38 -0.02 0.54 16 4 C -0.55 -30.25 8.66 25.60 0.22 -30.03 16 5 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 6 C 0.01 0.84 5.17 84.65 0.44 1.27 16 7 N -0.92 -55.05 12.16 21.45 0.26 -54.79 16 8 Si 0.96 43.49 29.55 68.60 2.03 45.52 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 12 N -0.71 -30.34 5.15 -321.04 -1.65 -31.99 16 13 C 0.39 15.03 6.78 138.45 0.94 15.97 16 14 N -0.67 -28.61 9.24 -336.24 -3.11 -31.71 16 15 C 0.07 2.34 6.44 86.26 0.56 2.89 16 16 C -0.13 -3.39 5.75 30.25 0.17 -3.21 16 17 C -0.12 -2.40 5.32 29.92 0.16 -2.24 16 18 C -0.11 -2.38 5.68 30.27 0.17 -2.21 16 19 C -0.12 -3.06 5.52 30.05 0.17 -2.90 16 20 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 21 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.04 2.25 6.83 -2.39 -0.02 2.23 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.40 14.99 8.44 -92.71 -0.78 14.21 16 25 H 0.05 1.48 6.56 -2.39 -0.02 1.47 16 26 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.04 1.25 8.05 -2.39 -0.02 1.23 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.07 1.32 7.93 -2.39 -0.02 1.30 16 31 H 0.04 1.20 7.87 -2.39 -0.02 1.19 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.03 8.00 -2.38 -0.02 2.01 16 34 H 0.09 2.20 6.64 -2.39 -0.02 2.18 16 Total: -1.00 -65.99 271.21 1.42 -64.57 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.29 Total: 19.05 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 3.61 Total: -10.65 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -4.50 Total: -118.49 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.99 1.42 -64.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698749.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.867 kcal (2) G-P(sol) polarization free energy of solvation -65.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds