Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48502 * 109.47454 * 270.00199 * 3 2 1 5 5 H 1.48505 * 109.46986 * 30.00344 * 3 2 1 6 6 H 1.48498 * 109.47110 * 150.00344 * 3 2 1 7 7 C 1.37871 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.51213 * 120.00325 * 359.97438 * 7 2 1 10 10 H 1.10532 * 105.87436 * 64.56014 * 9 7 2 11 11 C 1.50584 * 107.94459 * 310.84122 * 9 7 2 12 12 C 1.52106 * 113.69167 * 183.20278 * 11 9 7 13 13 N 1.45860 * 111.41981 * 48.35034 * 12 11 9 14 14 C 1.41603 * 118.95001 * 60.62107 * 13 12 11 15 15 C 1.50393 * 118.24946 * 297.21271 * 14 13 12 16 16 C 1.52922 * 113.55336 * 306.65054 * 15 14 13 17 17 N 1.40796 * 109.14685 * 180.02562 * 9 7 2 18 18 C 1.46073 * 120.40908 * 209.11733 * 17 9 7 19 19 C 1.44921 * 113.57588 * 270.80274 * 13 12 11 20 20 H 0.96996 * 119.99709 * 359.97438 * 1 2 3 21 21 H 1.10355 * 107.61672 * 64.03401 * 11 9 7 22 22 H 1.08525 * 110.53949 * 308.16537 * 11 9 7 23 23 H 1.09727 * 109.08785 * 286.97982 * 12 11 9 24 24 H 1.09753 * 109.07780 * 169.68041 * 12 11 9 25 25 H 1.09822 * 108.20197 * 174.48787 * 14 13 12 26 26 H 1.09776 * 108.25059 * 60.01650 * 14 13 12 27 27 H 1.08368 * 110.82955 * 71.10448 * 15 14 13 28 28 H 1.10220 * 107.91057 * 187.80030 * 15 14 13 29 29 H 1.09156 * 109.31290 * 173.00221 * 16 15 14 30 30 H 1.09381 * 109.00797 * 291.57492 * 16 15 14 31 31 H 1.08601 * 108.72067 * 61.29889 * 18 17 9 32 32 H 1.08604 * 108.75894 * 180.67200 * 18 17 9 33 33 H 1.08838 * 109.21299 * 329.19556 * 19 13 12 34 34 H 1.08865 * 109.24217 * 209.97685 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2486 -2.5036 -0.0005 10 1 0.7015 -2.5369 -0.9604 11 6 0.2057 -2.4372 1.0837 12 6 -0.5855 -3.7256 1.2503 13 7 0.2950 -4.8865 1.3179 14 6 1.2480 -4.9641 2.3624 15 6 2.3216 -3.9129 2.4259 16 6 3.1008 -3.7554 1.1195 17 7 2.1696 -3.5685 -0.0005 18 6 1.8209 -4.8477 -0.6135 19 6 0.5913 -5.4654 0.0228 20 1 -0.4849 0.8400 0.0004 21 1 -0.5067 -1.6389 0.8134 22 1 0.6548 -2.1422 2.0265 23 1 -1.2780 -3.8332 0.4060 24 1 -1.1863 -3.6617 2.1666 25 1 1.7417 -5.9433 2.3042 26 1 0.7107 -4.9521 3.3196 27 1 1.9086 -2.9580 2.7292 28 1 3.0426 -4.2113 3.2044 29 1 3.7715 -2.8981 1.2002 30 1 3.7016 -4.6541 0.9525 31 1 1.6258 -4.6864 -1.6697 32 1 2.6571 -5.5307 -0.4963 33 1 -0.2572 -5.3111 -0.6411 34 1 0.7627 -6.5343 0.1384 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260761131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 27.517195 kcal Electronic energy + Delta-G solvation = -15397.760995 eV Core-core repulsion = 13137.952783 eV Total energy + Delta-G solvation = -2259.808212 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41304 -34.46501 -33.35831 -32.23397 -30.76959 -26.78928 -25.82612 -25.01104 -22.98472 -21.01116 -19.04679 -18.46373 -16.53519 -15.75581 -14.79958 -14.57117 -14.47041 -13.87823 -13.12571 -12.78996 -12.55820 -12.29337 -12.22371 -11.58292 -11.04626 -10.97395 -10.78331 -10.70786 -10.46361 -10.31945 -10.17149 -9.94442 -9.75473 -9.29972 -8.71639 -8.14954 -7.12527 -6.50506 -5.87114 -3.99536 3.31924 3.38094 3.41902 4.40443 4.55263 5.06650 5.32291 5.38411 5.52351 5.76215 5.96035 5.99655 6.03709 6.14145 6.21472 6.35164 6.41351 6.46551 6.55517 6.56469 6.76474 6.86125 6.89395 7.06703 7.50860 7.59518 7.85115 8.04400 8.19461 8.39062 8.45803 8.77335 8.95236 9.28345 9.72927 11.08053 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042822 B = 0.011991 C = 0.011338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.718149 B = 2334.514272 C = 2469.086527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.052 3.948 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.493 4.493 8 H 0.057 0.943 9 C 0.273 3.727 10 H 0.016 0.984 11 C -0.189 4.189 12 C 0.103 3.897 13 N -0.623 5.623 14 C 0.138 3.862 15 C -0.186 4.186 16 C 0.118 3.882 17 N -0.610 5.610 18 C 0.070 3.930 19 C 0.076 3.924 20 H 0.258 0.742 21 H 0.126 0.874 22 H 0.037 0.963 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -8.256 2.367 8.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.167 3.833 10 H 0.033 0.967 11 C -0.230 4.230 12 C -0.023 4.023 13 N -0.346 5.346 14 C 0.009 3.991 15 C -0.228 4.228 16 C -0.009 4.009 17 N -0.333 5.333 18 C -0.060 4.060 19 C -0.053 4.053 20 H 0.069 0.931 21 H 0.143 0.857 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.254 -8.162 2.270 8.564 hybrid contribution 0.468 1.187 0.342 1.321 sum 1.723 -6.975 2.612 7.644 Atomic orbital electron populations 1.69601 1.05749 1.25819 1.52596 1.24890 0.94918 0.99068 0.95790 0.86493 0.79628 0.83252 0.77971 1.20833 1.21409 1.20149 1.21575 0.93280 0.90173 1.48164 0.92525 1.16923 0.87376 0.85351 0.93695 0.96659 1.22707 1.02372 0.97821 1.00127 1.21600 0.93205 0.88071 0.99418 1.52239 1.33516 1.38586 1.10292 1.19622 0.90652 0.96762 0.92030 1.22641 0.99018 1.01569 0.99556 1.21409 0.93183 0.99174 0.87104 1.52485 1.34146 1.09103 1.37598 1.21901 0.96604 0.89358 0.98092 1.21697 0.98644 0.96966 0.88039 0.93120 0.85730 0.94403 0.92865 0.93940 0.93759 0.93755 0.90925 0.93776 0.92128 0.93652 0.92753 0.92809 0.92012 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 10.47 55.43 0.58 -24.66 16 2 C 0.05 1.44 5.25 -17.82 -0.09 1.35 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.49 -13.63 8.32 -34.19 -0.28 -13.91 16 8 H 0.06 1.59 7.18 -52.48 -0.38 1.22 16 9 C 0.27 6.88 1.80 -72.99 -0.13 6.75 16 10 H 0.02 0.44 8.08 -51.05 -0.41 0.03 16 11 C -0.19 -4.56 3.80 -28.39 -0.11 -4.67 16 12 C 0.10 2.11 5.89 -4.84 -0.03 2.08 16 13 N -0.62 -11.63 3.31 -243.27 -0.81 -12.44 16 14 C 0.14 2.42 5.23 -7.90 -0.04 2.38 16 15 C -0.19 -3.45 5.03 -28.07 -0.14 -3.59 16 16 C 0.12 2.33 5.71 -3.89 -0.02 2.31 16 17 N -0.61 -13.36 3.06 -234.92 -0.72 -14.08 16 18 C 0.07 1.29 5.90 -4.98 -0.03 1.26 16 19 C 0.08 1.31 5.88 -5.59 -0.03 1.28 16 20 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 21 H 0.13 3.38 5.23 -51.15 -0.27 3.11 16 22 H 0.04 0.96 5.72 -52.20 -0.30 0.66 16 23 H 0.05 1.08 7.53 -51.52 -0.39 0.69 16 24 H 0.04 0.83 8.20 -51.50 -0.42 0.41 16 25 H 0.04 0.71 8.11 -51.46 -0.42 0.29 16 26 H 0.04 0.75 8.20 -51.49 -0.42 0.33 16 27 H 0.07 1.55 5.61 -52.28 -0.29 1.25 16 28 H 0.04 0.70 8.24 -51.23 -0.42 0.28 16 29 H 0.06 1.28 7.39 -51.84 -0.38 0.90 16 30 H 0.04 0.79 7.27 -51.71 -0.38 0.41 16 31 H 0.05 1.00 8.11 -52.15 -0.42 0.58 16 32 H 0.05 0.88 7.18 -52.15 -0.37 0.51 16 33 H 0.06 1.06 7.42 -52.02 -0.39 0.67 16 34 H 0.05 0.76 8.13 -52.00 -0.42 0.33 16 LS Contribution 246.40 15.07 3.71 3.71 Total: -1.00 -28.01 246.40 -8.38 -36.39 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.22 Total: -0.74 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.91 Total: -4.77 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.94 Total: -51.18 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.01 -8.38 -36.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260761131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.908 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds