Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48502 * 109.47454 * 270.00199 * 3 2 1 5 5 H 1.48505 * 109.46986 * 30.00344 * 3 2 1 6 6 H 1.48498 * 109.47110 * 150.00344 * 3 2 1 7 7 C 1.37871 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00003 * 179.97438 * 7 2 1 9 9 C 1.51213 * 120.00325 * 359.97438 * 7 2 1 10 10 H 1.10532 * 105.87436 * 64.56014 * 9 7 2 11 11 C 1.50584 * 107.94459 * 310.84122 * 9 7 2 12 12 C 1.52106 * 113.69167 * 183.20278 * 11 9 7 13 13 N 1.45860 * 111.41981 * 48.35034 * 12 11 9 14 14 C 1.41603 * 118.95001 * 60.62107 * 13 12 11 15 15 C 1.50393 * 118.24946 * 297.21271 * 14 13 12 16 16 C 1.52922 * 113.55336 * 306.65054 * 15 14 13 17 17 N 1.40796 * 109.14685 * 180.02562 * 9 7 2 18 18 C 1.46073 * 120.40908 * 209.11733 * 17 9 7 19 19 C 1.44921 * 113.57588 * 270.80274 * 13 12 11 20 20 H 0.96996 * 119.99709 * 359.97438 * 1 2 3 21 21 H 1.10355 * 107.61672 * 64.03401 * 11 9 7 22 22 H 1.08525 * 110.53949 * 308.16537 * 11 9 7 23 23 H 1.09727 * 109.08785 * 286.97982 * 12 11 9 24 24 H 1.09753 * 109.07780 * 169.68041 * 12 11 9 25 25 H 1.09822 * 108.20197 * 174.48787 * 14 13 12 26 26 H 1.09776 * 108.25059 * 60.01650 * 14 13 12 27 27 H 1.08368 * 110.82955 * 71.10448 * 15 14 13 28 28 H 1.10220 * 107.91057 * 187.80030 * 15 14 13 29 29 H 1.09156 * 109.31290 * 173.00221 * 16 15 14 30 30 H 1.09381 * 109.00797 * 291.57492 * 16 15 14 31 31 H 1.08601 * 108.72067 * 61.29889 * 18 17 9 32 32 H 1.08604 * 108.75894 * 180.67200 * 18 17 9 33 33 H 1.08838 * 109.21299 * 329.19556 * 19 13 12 34 34 H 1.08865 * 109.24217 * 209.97685 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2486 -2.5036 -0.0005 10 1 0.7015 -2.5369 -0.9604 11 6 0.2057 -2.4372 1.0837 12 6 -0.5855 -3.7256 1.2503 13 7 0.2950 -4.8865 1.3179 14 6 1.2480 -4.9641 2.3624 15 6 2.3216 -3.9129 2.4259 16 6 3.1008 -3.7554 1.1195 17 7 2.1696 -3.5685 -0.0005 18 6 1.8209 -4.8477 -0.6135 19 6 0.5913 -5.4654 0.0228 20 1 -0.4849 0.8400 0.0004 21 1 -0.5067 -1.6389 0.8134 22 1 0.6548 -2.1422 2.0265 23 1 -1.2780 -3.8332 0.4060 24 1 -1.1863 -3.6617 2.1666 25 1 1.7417 -5.9433 2.3042 26 1 0.7107 -4.9521 3.3196 27 1 1.9086 -2.9580 2.7292 28 1 3.0426 -4.2113 3.2044 29 1 3.7715 -2.8981 1.2002 30 1 3.7016 -4.6541 0.9525 31 1 1.6258 -4.6864 -1.6697 32 1 2.6571 -5.5307 -0.4963 33 1 -0.2572 -5.3111 -0.6411 34 1 0.7627 -6.5343 0.1384 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260761131.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = 9.608868 kcal Electronic energy + Delta-G solvation = -15398.537559 eV Core-core repulsion = 13137.952783 eV Total energy + Delta-G solvation = -2260.584775 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01445 -36.22253 -35.17651 -33.70428 -32.67961 -28.63998 -27.43058 -26.67685 -24.77665 -22.65816 -20.53666 -20.25853 -18.45146 -17.50888 -16.70408 -16.16874 -16.01860 -15.56286 -14.74739 -14.44570 -14.27652 -13.92851 -13.82822 -13.28079 -12.91254 -12.67932 -12.62306 -12.37239 -12.19402 -12.04930 -11.87362 -11.71747 -11.30442 -11.11569 -10.71591 -10.20462 -8.72002 -8.18338 -7.95294 -6.19483 1.38680 1.39030 1.49365 2.40416 3.03848 3.16438 3.46829 3.96806 4.07539 4.32246 4.42650 4.54821 4.57086 4.62086 4.76763 4.84736 4.90853 4.96720 5.01380 5.06852 5.09168 5.21009 5.30633 5.34866 5.59103 5.62366 5.85334 6.04389 6.40478 6.64280 6.76037 6.95117 7.11063 7.28714 7.67713 8.94157 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042822 B = 0.011991 C = 0.011338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.718149 B = 2334.514272 C = 2469.086527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.044 0.956 9 C 0.293 3.707 10 H -0.029 1.029 11 C -0.174 4.174 12 C 0.110 3.890 13 N -0.620 5.620 14 C 0.131 3.869 15 C -0.181 4.181 16 C 0.117 3.883 17 N -0.630 5.630 18 C 0.068 3.932 19 C 0.076 3.924 20 H 0.259 0.741 21 H 0.093 0.907 22 H 0.019 0.981 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -9.883 2.997 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.062 0.938 9 C 0.185 3.815 10 H -0.011 1.011 11 C -0.216 4.216 12 C -0.016 4.016 13 N -0.343 5.343 14 C 0.003 3.997 15 C -0.223 4.223 16 C -0.009 4.009 17 N -0.354 5.354 18 C -0.061 4.061 19 C -0.053 4.053 20 H 0.069 0.931 21 H 0.110 0.890 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.048 -9.816 2.901 10.438 hybrid contribution 0.264 1.681 0.122 1.706 sum 2.313 -8.135 3.023 8.981 Atomic orbital electron populations 1.69789 1.06794 1.26465 1.52620 1.25633 0.95766 1.02137 0.95399 0.85561 0.78496 0.79498 0.78059 1.20343 1.20770 1.19850 1.21866 0.92902 0.92006 1.48739 0.93753 1.16558 0.87370 0.85904 0.91650 1.01117 1.22487 1.01468 0.99069 0.98529 1.21418 0.93167 0.87212 0.99847 1.52365 1.33798 1.36915 1.11190 1.19755 0.90351 0.97621 0.91958 1.22539 0.99862 1.00266 0.99589 1.21464 0.92766 0.99608 0.87069 1.52305 1.33868 1.10187 1.39039 1.22025 0.98440 0.88170 0.97437 1.21762 0.97745 0.98606 0.87209 0.93107 0.88966 0.96263 0.92981 0.92941 0.90697 0.92952 0.94617 0.90753 0.94601 0.90290 0.93628 0.89938 0.92509 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 10.47 21.45 0.22 -52.84 16 2 C 0.01 0.44 5.25 84.65 0.44 0.88 16 3 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.52 -29.42 8.32 25.76 0.21 -29.21 16 8 H 0.04 2.57 7.18 -2.91 -0.02 2.55 16 9 C 0.29 15.15 1.80 44.66 0.08 15.23 16 10 H -0.03 -1.71 8.08 -1.56 -0.01 -1.72 16 11 C -0.17 -8.61 3.80 29.52 0.11 -8.50 16 12 C 0.11 4.47 5.89 86.20 0.51 4.98 16 13 N -0.62 -21.60 3.31 -923.57 -3.06 -24.66 16 14 C 0.13 4.16 5.23 86.43 0.45 4.61 16 15 C -0.18 -6.34 5.03 29.73 0.15 -6.19 16 16 C 0.12 4.44 5.71 86.29 0.49 4.93 16 17 N -0.63 -27.30 3.06 -897.14 -2.75 -30.04 16 18 C 0.07 2.35 5.90 86.00 0.51 2.86 16 19 C 0.08 2.38 5.88 86.22 0.51 2.89 16 20 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 21 H 0.09 5.21 5.23 -1.66 -0.01 5.21 16 22 H 0.02 0.99 5.72 -2.64 -0.02 0.98 16 23 H 0.05 2.11 7.53 -2.00 -0.02 2.09 16 24 H 0.05 2.01 8.20 -1.99 -0.02 2.00 16 25 H 0.07 1.99 8.11 -1.95 -0.02 1.97 16 26 H 0.05 1.60 8.20 -1.97 -0.02 1.58 16 27 H 0.04 1.51 5.61 -2.72 -0.02 1.49 16 28 H 0.07 2.14 8.24 -1.73 -0.01 2.13 16 29 H 0.04 1.51 7.39 -2.30 -0.02 1.49 16 30 H 0.08 2.45 7.27 -2.18 -0.02 2.44 16 31 H 0.05 1.64 8.11 -2.60 -0.02 1.62 16 32 H 0.08 2.38 7.18 -2.60 -0.02 2.36 16 33 H 0.06 1.84 7.42 -2.47 -0.02 1.82 16 34 H 0.09 2.16 8.13 -2.46 -0.02 2.14 16 Total: -1.00 -61.57 246.40 1.00 -60.57 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.09 Total: 7.46 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 3.47 Total: -7.52 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -5.58 Total: -107.54 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -61.57 1.00 -60.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260761131.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.176 kcal (2) G-P(sol) polarization free energy of solvation -61.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds