Wall clock time and date at job start Mon Mar 30 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99867 * 2 1 4 4 H 1.48499 * 109.46806 * 265.65359 * 3 2 1 5 5 H 1.48497 * 109.47121 * 25.65645 * 3 2 1 6 6 H 1.48494 * 109.47005 * 145.65865 * 3 2 1 7 7 C 1.37876 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99905 * 0.29472 * 7 2 1 9 9 C 1.50693 * 119.99820 * 180.30159 * 7 2 1 10 10 H 1.09003 * 109.42738 * 335.14763 * 9 7 2 11 11 N 1.46842 * 109.42628 * 95.03532 * 9 7 2 12 12 C 1.47032 * 110.52877 * 179.64696 * 11 9 7 13 13 C 1.52926 * 109.05133 * 299.87776 * 12 11 9 14 14 N 1.47125 * 109.75413 * 58.81340 * 13 12 11 15 15 C 1.47053 * 109.87649 * 177.87856 * 14 13 12 16 16 C 1.52912 * 109.88337 * 184.74560 * 15 14 13 17 17 C 1.53178 * 109.00531 * 300.40470 * 16 15 14 18 18 C 1.53013 * 108.87368 * 58.28011 * 17 16 15 19 19 C 1.46829 * 111.17532 * 301.58858 * 14 13 12 20 20 H 1.09003 * 109.51479 * 297.23380 * 19 14 13 21 21 H 0.97000 * 119.99714 * 359.97438 * 1 2 3 22 22 H 1.00900 * 110.99930 * 303.26562 * 11 9 7 23 23 H 1.09005 * 109.53892 * 59.75049 * 12 11 9 24 24 H 1.08996 * 109.54053 * 179.97438 * 12 11 9 25 25 H 1.08997 * 109.42088 * 178.90447 * 13 12 11 26 26 H 1.09000 * 109.41893 * 298.72689 * 13 12 11 27 27 H 1.09004 * 109.40430 * 304.87163 * 15 14 13 28 28 H 1.09002 * 109.40027 * 64.61880 * 15 14 13 29 29 H 1.08999 * 109.54896 * 60.26472 * 16 15 14 30 30 H 1.08996 * 109.54977 * 180.45170 * 16 15 14 31 31 H 1.08998 * 109.56961 * 178.09714 * 17 16 15 32 32 H 1.09002 * 109.57137 * 298.46166 * 17 16 15 33 33 H 1.08997 * 109.44541 * 62.10649 * 18 17 16 34 34 H 1.08994 * 109.44414 * 182.04983 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5885 1.9934 -1.3961 5 1 1.4037 2.6775 0.6062 6 1 3.4978 1.4685 0.7898 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 -0.0039 9 6 3.5115 -1.1940 0.0074 10 1 3.8760 -0.2603 -0.4209 11 7 3.9936 -1.3186 1.3888 12 6 5.4635 -1.3295 1.4229 13 6 5.9728 -2.5185 0.6072 14 7 5.4902 -2.4141 -0.7787 15 6 6.0200 -3.5289 -1.5780 16 6 5.6161 -3.3567 -3.0427 17 6 4.0876 -3.3289 -3.1386 18 6 3.5582 -2.1823 -2.2747 19 6 4.0234 -2.3713 -0.8277 20 1 3.6185 -3.3024 -0.4311 21 1 -0.4850 0.8401 0.0004 22 1 3.6239 -0.5803 1.9688 23 1 5.8450 -0.4029 0.9941 24 1 5.8035 -1.4219 2.4544 25 1 7.0628 -2.5212 0.6123 26 1 5.6068 -3.4450 1.0497 27 1 7.1073 -3.5446 -1.5016 28 1 5.6181 -4.4688 -1.1996 29 1 6.0227 -2.4207 -3.4255 30 1 6.0046 -4.1897 -3.6285 31 1 3.7896 -3.1726 -4.1754 32 1 3.6819 -4.2745 -2.7789 33 1 3.9377 -1.2348 -2.6570 34 1 2.4687 -2.1766 -2.3073 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260852180.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:43 Heat of formation + Delta-G solvation = -3.544221 kcal Electronic energy + Delta-G solvation = -14939.692173 eV Core-core repulsion = 12678.537037 eV Total energy + Delta-G solvation = -2261.155136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.15887 -35.41116 -33.41725 -31.80156 -30.55191 -28.55176 -25.59857 -23.17162 -22.91288 -21.29325 -19.36116 -18.81548 -16.92853 -15.72079 -14.90698 -14.39489 -14.29340 -13.94948 -13.43870 -13.31394 -12.90211 -12.76047 -12.40075 -12.08688 -11.37253 -11.16053 -11.02413 -10.86873 -10.77996 -10.41815 -10.04629 -9.88644 -9.72506 -9.33144 -9.13586 -8.65328 -7.79189 -7.32757 -6.13439 -4.14251 3.23786 3.32556 3.33850 4.34967 4.42733 4.96842 5.22735 5.29767 5.39591 5.48670 5.61650 5.79699 5.86325 5.92911 5.97660 5.98510 6.13157 6.19275 6.30342 6.37935 6.42198 6.48256 6.49944 6.79340 6.82459 6.99921 7.16308 7.48503 7.65036 7.80810 8.16793 8.44584 8.59633 8.95417 9.49281 10.99284 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.012955 C = 0.010658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.664093 B = 2160.782923 C = 2626.564448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.190 3.810 10 H 0.007 0.993 11 N -0.687 5.687 12 C 0.050 3.950 13 C 0.063 3.937 14 N -0.540 5.540 15 C 0.056 3.944 16 C -0.115 4.115 17 C -0.122 4.122 18 C -0.102 4.102 19 C 0.108 3.892 20 H 0.039 0.961 21 H 0.265 0.735 22 H 0.334 0.666 23 H 0.023 0.977 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.919 -3.987 -2.837 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.095 0.905 9 C 0.083 3.917 10 H 0.025 0.975 11 N -0.320 5.320 12 C -0.080 4.080 13 C -0.066 4.066 14 N -0.265 5.265 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.160 4.160 18 C -0.141 4.141 19 C 0.000 4.000 20 H 0.057 0.943 21 H 0.075 0.925 22 H 0.153 0.847 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.868 -4.114 -3.027 12.008 hybrid contribution 0.357 1.120 0.255 1.203 sum 11.225 -2.993 -2.771 11.943 Atomic orbital electron populations 1.69891 1.06172 1.27009 1.50010 1.25071 0.94724 0.98777 0.94241 0.86855 0.79703 0.83950 0.78789 1.20143 1.21506 1.19774 1.20866 0.88043 0.94538 1.50077 0.90523 1.19599 0.95338 0.92252 0.84553 0.97547 1.61318 1.04210 1.52549 1.13957 1.21952 0.91774 0.96327 0.97948 1.22034 0.98167 0.97848 0.88536 1.62433 1.11390 1.42742 1.09966 1.22029 0.98860 0.92274 0.94099 1.21564 0.96710 1.01459 0.95524 1.21632 0.95044 0.99507 0.99794 1.21530 1.01913 0.97227 0.93394 1.21634 0.83774 0.98940 0.95690 0.94330 0.92530 0.84704 0.95867 0.91937 0.91809 0.94767 0.91813 0.95551 0.91514 0.92392 0.92380 0.92645 0.92351 0.89708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.45 26.70 -169.99 -4.54 16.91 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.44 6.83 56.52 0.39 -6.06 16 7 C -0.50 -13.61 7.93 -34.44 -0.27 -13.88 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.19 4.55 1.62 -68.82 -0.11 4.44 16 10 H 0.01 0.17 5.48 -51.93 -0.28 -0.11 16 11 N -0.69 -15.33 6.55 -107.86 -0.71 -16.03 16 12 C 0.05 0.94 6.72 -3.79 -0.03 0.91 16 13 C 0.06 1.09 5.53 -3.74 -0.02 1.07 16 14 N -0.54 -10.08 4.71 -226.29 -1.07 -11.15 16 15 C 0.06 0.86 5.37 -3.79 -0.02 0.84 16 16 C -0.11 -1.65 6.10 -26.68 -0.16 -1.81 16 17 C -0.12 -1.94 6.01 -26.63 -0.16 -2.10 16 18 C -0.10 -2.03 5.06 -26.64 -0.13 -2.17 16 19 C 0.11 2.30 1.84 -67.59 -0.12 2.17 16 20 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 22 H 0.33 7.53 8.48 -39.29 -0.33 7.20 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.84 7.27 -51.93 -0.38 1.47 16 LS Contribution 259.80 15.07 3.92 3.92 Total: -1.00 -29.06 259.80 -8.39 -37.45 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.64 Total: 3.24 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.13 Total: -8.52 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.00 Total: -53.00 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.54 Total: 16.91 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.06 -8.39 -37.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852180.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.908 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds