Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99504 * 2 1 4 4 H 1.48496 * 109.47184 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46871 * 120.00105 * 3 2 1 6 6 H 1.48503 * 109.46955 * 239.99767 * 3 2 1 7 7 C 1.37876 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00033 * 344.15408 * 7 2 1 9 9 C 1.50698 * 119.99993 * 164.15755 * 7 2 1 10 10 H 1.09004 * 109.42385 * 54.29755 * 9 7 2 11 11 N 1.46841 * 109.42278 * 294.41472 * 9 7 2 12 12 C 1.47029 * 110.52927 * 299.53232 * 11 9 7 13 13 C 1.52921 * 109.05105 * 299.87856 * 12 11 9 14 14 N 1.47121 * 109.75878 * 58.81182 * 13 12 11 15 15 C 1.47050 * 109.88131 * 177.87574 * 14 13 12 16 16 C 1.52911 * 109.88208 * 184.74205 * 15 14 13 17 17 C 1.53183 * 109.00803 * 300.40798 * 16 15 14 18 18 C 1.53001 * 108.87055 * 58.28239 * 17 16 15 19 19 C 1.46829 * 111.17263 * 301.59243 * 14 13 12 20 20 H 1.09005 * 109.51644 * 297.22732 * 19 14 13 21 21 H 0.96998 * 119.99157 * 174.70937 * 1 2 3 22 22 H 1.00907 * 110.99785 * 63.15336 * 11 9 7 23 23 H 1.09000 * 109.53806 * 59.74918 * 12 11 9 24 24 H 1.09000 * 109.54397 * 179.91488 * 12 11 9 25 25 H 1.09002 * 109.41938 * 178.90182 * 13 12 11 26 26 H 1.09003 * 109.42410 * 298.72017 * 13 12 11 27 27 H 1.08991 * 109.40660 * 304.87560 * 15 14 13 28 28 H 1.09008 * 109.39928 * 64.70737 * 15 14 13 29 29 H 1.09000 * 109.55162 * 60.26971 * 16 15 14 30 30 H 1.09000 * 109.54582 * 180.55031 * 16 15 14 31 31 H 1.09001 * 109.56490 * 178.09790 * 17 16 15 32 32 H 1.08996 * 109.56928 * 298.33642 * 17 16 15 33 33 H 1.08998 * 109.45193 * 62.10681 * 18 17 16 34 34 H 1.09007 * 109.44622 * 182.04866 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.4955 -2.1116 0.2544 9 6 3.4687 -1.2185 -0.3568 10 1 4.0083 -0.5165 0.2790 11 7 3.6355 -0.8310 -1.7633 12 6 2.9231 -1.7681 -2.6443 13 6 3.4918 -3.1732 -2.4426 14 7 3.3412 -3.5735 -1.0349 15 6 3.8410 -4.9438 -0.8484 16 6 3.5773 -5.4028 0.5861 17 6 4.2912 -4.4531 1.5530 18 6 3.7785 -3.0307 1.3186 19 6 4.0221 -2.6298 -0.1396 20 1 5.0921 -2.6375 -0.3479 21 1 -0.4849 -0.8365 -0.0775 22 1 3.3248 0.1167 -1.9166 23 1 1.8615 -1.7655 -2.3970 24 1 3.0561 -1.4651 -3.6828 25 1 2.9544 -3.8765 -3.0789 26 1 4.5485 -3.1784 -2.7099 27 1 3.3316 -5.6126 -1.5420 28 1 4.9132 -4.9678 -1.0436 29 1 2.5054 -5.3860 0.7833 30 1 3.9584 -6.4150 0.7211 31 1 4.0815 -4.7522 2.5800 32 1 5.3658 -4.4900 1.3742 33 1 2.7105 -2.9900 1.5324 34 1 4.3070 -2.3413 1.9771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260852184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = 0.472229 kcal Electronic energy + Delta-G solvation = -15140.634155 eV Core-core repulsion = 12879.653185 eV Total energy + Delta-G solvation = -2260.980970 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.15085 -35.44538 -33.19531 -31.65169 -30.48581 -28.35299 -25.02803 -23.11446 -22.83592 -21.52382 -19.33129 -18.69532 -16.93365 -15.77081 -14.89675 -14.30984 -14.06802 -13.82030 -13.50301 -13.31634 -12.95457 -12.31873 -12.25147 -11.91170 -11.24447 -10.97037 -10.90815 -10.75301 -10.51533 -10.23993 -10.11231 -9.97017 -9.61665 -9.31431 -8.90648 -8.37503 -7.60999 -7.18483 -6.31955 -4.00101 3.33597 3.42481 3.58930 4.48671 4.54198 5.20850 5.28092 5.32159 5.42976 5.48391 5.78655 5.83273 5.94441 6.01347 6.02643 6.12617 6.15962 6.26496 6.32344 6.42593 6.50129 6.52785 6.63173 6.76763 7.02501 7.13300 7.26371 7.79191 7.85417 8.02478 8.28934 8.49640 8.54633 9.06081 9.67637 10.98676 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.012866 C = 0.011466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.694911 B = 2175.779348 C = 2441.336151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 1.038 2.962 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.594 4.594 8 H 0.069 0.931 9 C 0.175 3.825 10 H 0.036 0.964 11 N -0.703 5.703 12 C 0.066 3.934 13 C 0.068 3.932 14 N -0.512 5.512 15 C 0.054 3.946 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.106 4.106 19 C 0.115 3.885 20 H 0.018 0.982 21 H 0.268 0.732 22 H 0.330 0.670 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 -6.778 -1.240 10.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.867 3.133 4 H -0.213 1.213 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.634 4.634 8 H 0.087 0.913 9 C 0.067 3.933 10 H 0.054 0.946 11 N -0.337 5.337 12 C -0.064 4.064 13 C -0.060 4.060 14 N -0.238 5.238 15 C -0.074 4.074 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.144 4.144 19 C 0.006 3.994 20 H 0.036 0.964 21 H 0.078 0.922 22 H 0.150 0.850 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.809 -5.423 -1.115 9.573 hybrid contribution 0.135 -1.430 -0.142 1.443 sum 7.944 -6.854 -1.257 10.567 Atomic orbital electron populations 1.70808 1.07041 1.30424 1.46034 1.25716 0.96370 1.02107 0.93824 0.84095 0.75349 0.76775 0.77072 1.21265 1.21019 1.20459 1.22527 0.94293 0.96249 1.50338 0.91326 1.19532 0.96606 0.90962 0.86156 0.94598 1.61562 1.58980 1.05622 1.07519 1.21644 0.98548 0.91377 0.94878 1.21999 0.97877 0.96912 0.89217 1.62183 1.56564 1.00552 1.04465 1.22064 0.96782 0.91593 0.96997 1.21535 1.01460 0.97538 0.94605 1.21617 0.99008 0.96696 0.98548 1.21585 1.03302 0.93986 0.95513 1.21437 0.93144 0.93119 0.91687 0.96415 0.92230 0.85015 0.92734 0.93090 0.92032 0.95889 0.91772 0.96143 0.91219 0.92565 0.92527 0.93168 0.89652 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 13.70 55.43 0.76 -26.75 16 2 C 0.02 0.69 5.41 -17.82 -0.10 0.60 16 3 Si 1.04 24.71 26.46 -169.99 -4.50 20.22 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.09 5.62 56.52 0.32 -5.77 16 7 C -0.59 -16.02 6.29 -34.44 -0.22 -16.23 16 8 H 0.07 2.05 6.91 -52.49 -0.36 1.69 16 9 C 0.18 4.17 2.12 -68.82 -0.15 4.02 16 10 H 0.04 0.88 6.82 -51.93 -0.35 0.52 16 11 N -0.70 -15.96 6.71 -107.86 -0.72 -16.69 16 12 C 0.07 1.39 6.44 -3.79 -0.02 1.37 16 13 C 0.07 1.31 5.53 -3.74 -0.02 1.29 16 14 N -0.51 -10.32 4.31 -226.30 -0.98 -11.30 16 15 C 0.05 0.90 5.37 -3.79 -0.02 0.88 16 16 C -0.11 -1.74 6.10 -26.68 -0.16 -1.90 16 17 C -0.12 -1.91 6.01 -26.64 -0.16 -2.07 16 18 C -0.11 -2.05 5.04 -26.64 -0.13 -2.19 16 19 C 0.11 2.42 2.02 -67.59 -0.14 2.29 16 20 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.27 8.19 8.73 -40.82 -0.36 7.83 16 22 H 0.33 7.64 5.40 -39.29 -0.21 7.42 16 23 H 0.05 1.34 7.06 -51.93 -0.37 0.97 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.89 6.44 -51.93 -0.33 1.56 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 252.16 15.07 3.80 3.80 Total: -1.00 -28.92 252.16 -8.27 -37.18 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.51 Total: 5.48 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.12 Total: -11.96 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.94 Total: -54.73 kcal Atomic # 14 Polarization: 24.71 SS G_CDS: -4.50 Total: 20.22 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.92 -8.27 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.656 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds