Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99504 * 2 1 4 4 H 1.48496 * 109.47184 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46871 * 120.00105 * 3 2 1 6 6 H 1.48503 * 109.46955 * 239.99767 * 3 2 1 7 7 C 1.37876 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00033 * 344.15408 * 7 2 1 9 9 C 1.50698 * 119.99993 * 164.15755 * 7 2 1 10 10 H 1.09004 * 109.42385 * 54.29755 * 9 7 2 11 11 N 1.46841 * 109.42278 * 294.41472 * 9 7 2 12 12 C 1.47029 * 110.52927 * 299.53232 * 11 9 7 13 13 C 1.52921 * 109.05105 * 299.87856 * 12 11 9 14 14 N 1.47121 * 109.75878 * 58.81182 * 13 12 11 15 15 C 1.47050 * 109.88131 * 177.87574 * 14 13 12 16 16 C 1.52911 * 109.88208 * 184.74205 * 15 14 13 17 17 C 1.53183 * 109.00803 * 300.40798 * 16 15 14 18 18 C 1.53001 * 108.87055 * 58.28239 * 17 16 15 19 19 C 1.46829 * 111.17263 * 301.59243 * 14 13 12 20 20 H 1.09005 * 109.51644 * 297.22732 * 19 14 13 21 21 H 0.96998 * 119.99157 * 174.70937 * 1 2 3 22 22 H 1.00907 * 110.99785 * 63.15336 * 11 9 7 23 23 H 1.09000 * 109.53806 * 59.74918 * 12 11 9 24 24 H 1.09000 * 109.54397 * 179.91488 * 12 11 9 25 25 H 1.09002 * 109.41938 * 178.90182 * 13 12 11 26 26 H 1.09003 * 109.42410 * 298.72017 * 13 12 11 27 27 H 1.08991 * 109.40660 * 304.87560 * 15 14 13 28 28 H 1.09008 * 109.39928 * 64.70737 * 15 14 13 29 29 H 1.09000 * 109.55162 * 60.26971 * 16 15 14 30 30 H 1.09000 * 109.54582 * 180.55031 * 16 15 14 31 31 H 1.09001 * 109.56490 * 178.09790 * 17 16 15 32 32 H 1.08996 * 109.56928 * 298.33642 * 17 16 15 33 33 H 1.08998 * 109.45193 * 62.10681 * 18 17 16 34 34 H 1.09007 * 109.44622 * 182.04866 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1029 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.4955 -2.1116 0.2544 9 6 3.4687 -1.2185 -0.3568 10 1 4.0083 -0.5165 0.2790 11 7 3.6355 -0.8310 -1.7633 12 6 2.9231 -1.7681 -2.6443 13 6 3.4918 -3.1732 -2.4426 14 7 3.3412 -3.5735 -1.0349 15 6 3.8410 -4.9438 -0.8484 16 6 3.5773 -5.4028 0.5861 17 6 4.2912 -4.4531 1.5530 18 6 3.7785 -3.0307 1.3186 19 6 4.0221 -2.6298 -0.1396 20 1 5.0921 -2.6375 -0.3479 21 1 -0.4849 -0.8365 -0.0775 22 1 3.3248 0.1167 -1.9166 23 1 1.8615 -1.7655 -2.3970 24 1 3.0561 -1.4651 -3.6828 25 1 2.9544 -3.8765 -3.0789 26 1 4.5485 -3.1784 -2.7099 27 1 3.3316 -5.6126 -1.5420 28 1 4.9132 -4.9678 -1.0436 29 1 2.5054 -5.3860 0.7833 30 1 3.9584 -6.4150 0.7211 31 1 4.0815 -4.7522 2.5800 32 1 5.3658 -4.4900 1.3742 33 1 2.7105 -2.9900 1.5324 34 1 4.3070 -2.3413 1.9771 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260852184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -21.371710 kcal Electronic energy + Delta-G solvation = -15141.581379 eV Core-core repulsion = 12879.653185 eV Total energy + Delta-G solvation = -2261.928194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73731 -37.07113 -34.97152 -33.58327 -32.02830 -29.93949 -26.98841 -24.71406 -24.37405 -23.18423 -20.73449 -20.62829 -18.87914 -17.49578 -16.40078 -15.90978 -15.73683 -15.54899 -15.15318 -14.88952 -14.47140 -14.09697 -13.90099 -13.64763 -12.74663 -12.63002 -12.51562 -12.43280 -12.03583 -11.91427 -11.81395 -11.60597 -11.14925 -11.04498 -10.75482 -10.54820 -9.29334 -8.98876 -8.52401 -6.24718 1.42570 1.49930 1.69112 2.49278 3.04401 3.16076 3.68423 3.94660 3.99070 4.07061 4.24518 4.42216 4.49887 4.53241 4.59300 4.63973 4.68579 4.84807 4.88368 4.91732 5.06123 5.11136 5.16158 5.27749 5.29648 5.45428 5.61732 5.95057 6.12694 6.27299 6.34400 6.48361 6.66300 6.80146 7.50805 8.71791 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.036607 B = 0.012866 C = 0.011466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.694911 B = 2175.779348 C = 2441.336151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.028 4.028 3 Si 1.078 2.922 4 H -0.295 1.295 5 H -0.268 1.268 6 H -0.246 1.246 7 C -0.574 4.574 8 H 0.027 0.973 9 C 0.172 3.828 10 H 0.035 0.965 11 N -0.695 5.695 12 C 0.065 3.935 13 C 0.070 3.930 14 N -0.540 5.540 15 C 0.053 3.947 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.104 4.104 19 C 0.117 3.883 20 H 0.025 0.975 21 H 0.249 0.751 22 H 0.326 0.674 23 H 0.011 0.989 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 -7.575 -1.753 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.225 4.225 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.614 4.614 8 H 0.046 0.954 9 C 0.063 3.937 10 H 0.052 0.948 11 N -0.328 5.328 12 C -0.065 4.065 13 C -0.058 4.058 14 N -0.266 5.266 15 C -0.075 4.075 16 C -0.149 4.149 17 C -0.151 4.151 18 C -0.143 4.143 19 C 0.008 3.992 20 H 0.043 0.957 21 H 0.057 0.943 22 H 0.145 0.855 23 H 0.030 0.970 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.403 -6.256 -1.637 12.249 hybrid contribution -0.695 -1.272 0.009 1.450 sum 9.708 -7.528 -1.628 12.393 Atomic orbital electron populations 1.70949 1.08371 1.29211 1.49605 1.27043 0.96255 1.05895 0.93350 0.83587 0.74715 0.72538 0.79046 1.22115 1.19350 1.17095 1.22523 0.96005 0.94364 1.48525 0.95444 1.19548 0.94172 0.93199 0.86734 0.94754 1.61580 1.58650 1.05702 1.06858 1.21732 0.95883 0.92843 0.96049 1.22008 0.98685 0.95818 0.89263 1.62152 1.57530 1.02178 1.04738 1.22170 0.97612 0.89552 0.98130 1.21552 1.00305 0.99288 0.93772 1.21574 0.99861 0.93974 0.99739 1.21521 1.00971 0.96992 0.94776 1.21345 0.93208 0.91820 0.92849 0.95677 0.94255 0.85527 0.97047 0.90286 0.90061 0.94571 0.90362 0.94762 0.93329 0.89033 0.90907 0.91323 0.93565 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.51 13.70 21.45 0.29 -59.22 16 2 C -0.03 -1.61 5.41 84.65 0.46 -1.15 16 3 Si 1.08 49.76 26.46 68.60 1.81 51.57 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.25 -10.02 5.62 99.48 0.56 -9.46 16 7 C -0.57 -31.81 6.29 25.60 0.16 -31.65 16 8 H 0.03 1.72 6.91 -2.91 -0.02 1.70 16 9 C 0.17 8.07 2.12 44.23 0.09 8.17 16 10 H 0.03 1.63 6.82 -2.39 -0.02 1.62 16 11 N -0.70 -30.50 6.71 -495.17 -3.32 -33.83 16 12 C 0.07 2.68 6.44 86.25 0.56 3.24 16 13 C 0.07 2.54 5.53 86.23 0.48 3.02 16 14 N -0.54 -21.00 4.31 -869.87 -3.75 -24.75 16 15 C 0.05 1.60 5.37 86.24 0.46 2.06 16 16 C -0.11 -3.12 6.10 30.63 0.19 -2.93 16 17 C -0.11 -3.29 6.01 30.66 0.18 -3.11 16 18 C -0.10 -3.98 5.04 30.65 0.15 -3.83 16 19 C 0.12 4.77 2.02 45.04 0.09 4.86 16 20 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 21 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 22 H 0.33 14.50 5.40 -89.69 -0.48 14.01 16 23 H 0.01 0.56 7.06 -2.39 -0.02 0.54 16 24 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 25 H 0.08 2.59 8.10 -2.39 -0.02 2.57 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 28 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 2.11 6.44 -2.39 -0.02 2.09 16 34 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -64.34 252.16 -1.74 -66.08 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.40 Total: 21.46 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 2.83 Total: -21.32 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.78 Total: -117.80 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 1.81 Total: 51.57 kcal Total: -64.34 -1.74 -66.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.713 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds