Wall clock time and date at job start Mon Mar 30 2020 02:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00591 * 2 1 4 4 H 1.48494 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46792 * 300.00485 * 3 2 1 6 6 H 1.48499 * 109.47013 * 59.99908 * 3 2 1 7 7 C 1.37885 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 178.65393 * 7 2 1 9 9 C 1.50698 * 119.99979 * 358.64434 * 7 2 1 10 10 C 1.52991 * 110.26930 * 304.87764 * 9 7 2 11 11 N 1.46906 * 109.47200 * 303.66444 * 10 9 7 12 12 C 1.54569 * 110.29887 * 182.80539 * 9 7 2 13 13 C 1.54811 * 102.89948 * 264.07043 * 12 9 7 14 14 N 1.48484 * 103.68067 * 322.79350 * 13 12 9 15 15 C 1.47485 * 109.43551 * 154.05638 * 14 13 12 16 16 C 1.54276 * 107.37745 * 245.92886 * 15 14 13 17 17 C 1.55134 * 103.03020 * 22.29516 * 16 15 14 18 18 C 1.48492 * 105.94787 * 37.50191 * 14 13 12 19 19 H 1.08999 * 111.57850 * 214.74438 * 18 14 13 20 20 H 0.97003 * 119.99554 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47306 * 183.66489 * 10 9 7 22 22 H 1.09001 * 109.47511 * 63.66114 * 10 9 7 23 23 H 1.00902 * 111.00010 * 180.02562 * 11 10 9 24 24 H 1.00904 * 110.99537 * 303.95416 * 11 10 9 25 25 H 1.09004 * 110.72657 * 22.42418 * 12 9 7 26 26 H 1.09003 * 110.72582 * 145.53573 * 12 9 7 27 27 H 1.09000 * 110.58256 * 81.34065 * 13 12 9 28 28 H 1.08999 * 110.58307 * 204.09326 * 13 12 9 29 29 H 1.08996 * 109.86499 * 5.37739 * 15 14 13 30 30 H 1.09000 * 109.86717 * 126.48013 * 15 14 13 31 31 H 1.08997 * 110.70333 * 263.91568 * 16 15 14 32 32 H 1.08996 * 110.85299 * 140.74917 * 16 15 14 33 33 H 1.09000 * 110.98271 * 206.14667 * 17 16 15 34 34 H 1.09000 * 110.98277 * 82.35636 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0842 -1.1944 -0.0225 9 6 1.2512 -2.4990 0.0298 10 6 0.2998 -2.5341 1.2274 11 7 1.0604 -2.3086 2.4638 12 6 2.2383 -3.6867 0.0940 13 6 2.3720 -4.1057 -1.3903 14 7 1.0028 -3.9174 -1.9330 15 6 1.0802 -3.6687 -3.3847 16 6 0.5961 -2.2247 -3.6313 17 6 0.8094 -1.5443 -2.2536 18 6 0.4689 -2.6960 -1.2787 19 1 -0.6026 -2.7753 -1.0952 20 1 -0.4850 0.8401 0.0004 21 1 -0.1897 -3.5069 1.2742 22 1 -0.4529 -1.7536 1.1165 23 1 0.4539 -2.3276 3.2700 24 1 1.8065 -2.9815 2.5571 25 1 3.2011 -3.3670 0.4929 26 1 1.8255 -4.4995 0.6916 27 1 3.0816 -3.4604 -1.9082 28 1 2.6774 -5.1491 -1.4679 29 1 2.1101 -3.7771 -3.7246 30 1 0.4372 -4.3706 -3.9156 31 1 -0.4582 -2.2137 -3.9073 32 1 1.1991 -1.7390 -4.3984 33 1 0.1249 -0.7063 -2.1220 34 1 1.8441 -1.2236 -2.1326 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:51 Heat of formation + Delta-G solvation = 13.999775 kcal Electronic energy + Delta-G solvation = -15332.148403 eV Core-core repulsion = 13071.754032 eV Total energy + Delta-G solvation = -2260.394371 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.32040 -34.86198 -32.48914 -31.58348 -29.32792 -27.01150 -25.62847 -24.52391 -21.94877 -19.96754 -19.25426 -18.49912 -16.10497 -15.27562 -14.75880 -14.51208 -13.97905 -13.31165 -13.04498 -12.76302 -12.38295 -12.15100 -11.58029 -11.42707 -11.06616 -10.83645 -10.63107 -10.42849 -10.23400 -10.15507 -9.95727 -9.64143 -9.13661 -8.93139 -8.78171 -8.11794 -7.55824 -7.31811 -5.88711 -3.86638 3.34889 3.43920 3.46862 4.51160 5.03434 5.36663 5.53166 5.65971 5.85385 5.94117 6.03301 6.09125 6.24405 6.34480 6.42875 6.53221 6.63979 6.66508 6.80137 6.85802 6.97698 7.07293 7.23647 7.43663 7.52724 7.66197 7.83360 7.86689 8.01205 8.13661 8.36308 8.58723 8.67555 9.04392 9.70135 11.15376 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028150 B = 0.016584 C = 0.012703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.437435 B = 1687.951214 C = 2203.619228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.076 3.924 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.468 4.468 8 H 0.051 0.949 9 C 0.073 3.927 10 C 0.079 3.921 11 N -0.825 5.825 12 C -0.118 4.118 13 C 0.038 3.962 14 N -0.517 5.517 15 C 0.036 3.964 16 C -0.157 4.157 17 C -0.114 4.114 18 C 0.086 3.914 19 H 0.070 0.930 20 H 0.256 0.744 21 H -0.024 1.024 22 H 0.105 0.895 23 H 0.313 0.687 24 H 0.318 0.682 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -4.688 -2.366 5.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.712 3.288 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.071 3.929 10 C -0.052 4.052 11 N -0.351 5.351 12 C -0.156 4.156 13 C -0.090 4.090 14 N -0.241 5.241 15 C -0.093 4.093 16 C -0.196 4.196 17 C -0.153 4.153 18 C -0.022 4.022 19 H 0.088 0.912 20 H 0.066 0.934 21 H -0.006 1.006 22 H 0.123 0.877 23 H 0.123 0.877 24 H 0.129 0.871 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.031 -4.346 -2.597 5.166 hybrid contribution 0.607 0.652 0.055 0.893 sum 1.638 -3.693 -2.541 4.773 Atomic orbital electron populations 1.69830 1.05647 1.25735 1.51158 1.24714 0.94645 0.98240 0.94896 0.86676 0.80202 0.84658 0.77226 1.20174 1.21552 1.21215 1.20728 0.92046 0.89408 1.48473 0.93128 1.18950 0.91170 0.92663 0.90103 1.21985 0.97135 0.96471 0.89579 1.58606 1.14888 1.57843 1.03748 1.22638 1.00410 0.98281 0.94257 1.23152 0.90796 0.98600 0.96472 1.66257 1.17894 1.37224 1.02697 1.22877 0.99232 0.96183 0.90995 1.23006 0.99942 0.96229 1.00395 1.23065 1.04188 0.98775 0.89230 1.23102 0.98176 0.85612 0.95338 0.91216 0.93411 1.00602 0.87734 0.87670 0.87118 0.92166 0.93822 0.94144 0.92538 0.93586 0.92226 0.92718 0.92858 0.89747 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.19 8.99 55.43 0.50 -22.70 16 2 C 0.08 1.95 3.81 -17.82 -0.07 1.88 16 3 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.47 -11.88 5.45 -34.44 -0.19 -12.07 16 8 H 0.05 1.34 7.57 -52.49 -0.40 0.94 16 9 C 0.07 1.68 0.41 -154.47 -0.06 1.62 16 10 C 0.08 1.82 5.15 -3.83 -0.02 1.80 16 11 N -0.82 -17.35 9.13 -10.37 -0.09 -17.45 16 12 C -0.12 -2.44 5.25 -24.95 -0.13 -2.57 16 13 C 0.04 0.75 6.24 -1.99 -0.01 0.74 16 14 N -0.52 -10.71 5.86 -220.04 -1.29 -12.00 16 15 C 0.04 0.66 6.79 -2.84 -0.02 0.64 16 16 C -0.16 -2.98 6.94 -24.93 -0.17 -3.15 16 17 C -0.11 -2.57 4.46 -24.71 -0.11 -2.68 16 18 C 0.09 1.96 3.25 -65.57 -0.21 1.75 16 19 H 0.07 1.72 7.77 -51.93 -0.40 1.31 16 20 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 21 H -0.02 -0.54 8.08 -51.93 -0.42 -0.96 16 22 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 23 H 0.31 5.84 9.08 -39.29 -0.36 5.48 16 24 H 0.32 6.19 8.15 -39.29 -0.32 5.87 16 25 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 26 H 0.04 0.86 7.83 -51.93 -0.41 0.46 16 27 H 0.04 0.81 7.59 -51.93 -0.39 0.42 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.80 7.25 -51.93 -0.38 0.42 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 2.08 6.38 -51.93 -0.33 1.74 16 34 H 0.08 2.00 6.09 -51.93 -0.32 1.69 16 LS Contribution 252.91 15.07 3.81 3.81 Total: -1.00 -26.17 252.91 -8.35 -34.52 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.26 Total: 9.89 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.00 Total: -12.05 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.89 Total: -52.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.17 -8.35 -34.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.518 kcal (2) G-P(sol) polarization free energy of solvation -26.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds