Wall clock time and date at job start Mon Mar 30 2020 02:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00591 * 2 1 4 4 H 1.48494 * 109.47274 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46792 * 300.00485 * 3 2 1 6 6 H 1.48499 * 109.47013 * 59.99908 * 3 2 1 7 7 C 1.37885 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99951 * 178.65393 * 7 2 1 9 9 C 1.50698 * 119.99979 * 358.64434 * 7 2 1 10 10 C 1.52991 * 110.26930 * 304.87764 * 9 7 2 11 11 N 1.46906 * 109.47200 * 303.66444 * 10 9 7 12 12 C 1.54569 * 110.29887 * 182.80539 * 9 7 2 13 13 C 1.54811 * 102.89948 * 264.07043 * 12 9 7 14 14 N 1.48484 * 103.68067 * 322.79350 * 13 12 9 15 15 C 1.47485 * 109.43551 * 154.05638 * 14 13 12 16 16 C 1.54276 * 107.37745 * 245.92886 * 15 14 13 17 17 C 1.55134 * 103.03020 * 22.29516 * 16 15 14 18 18 C 1.48492 * 105.94787 * 37.50191 * 14 13 12 19 19 H 1.08999 * 111.57850 * 214.74438 * 18 14 13 20 20 H 0.97003 * 119.99554 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47306 * 183.66489 * 10 9 7 22 22 H 1.09001 * 109.47511 * 63.66114 * 10 9 7 23 23 H 1.00902 * 111.00010 * 180.02562 * 11 10 9 24 24 H 1.00904 * 110.99537 * 303.95416 * 11 10 9 25 25 H 1.09004 * 110.72657 * 22.42418 * 12 9 7 26 26 H 1.09003 * 110.72582 * 145.53573 * 12 9 7 27 27 H 1.09000 * 110.58256 * 81.34065 * 13 12 9 28 28 H 1.08999 * 110.58307 * 204.09326 * 13 12 9 29 29 H 1.08996 * 109.86499 * 5.37739 * 15 14 13 30 30 H 1.09000 * 109.86717 * 126.48013 * 15 14 13 31 31 H 1.08997 * 110.70333 * 263.91568 * 16 15 14 32 32 H 1.08996 * 110.85299 * 140.74917 * 16 15 14 33 33 H 1.09000 * 110.98271 * 206.14667 * 17 16 15 34 34 H 1.09000 * 110.98277 * 82.35636 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0842 -1.1944 -0.0225 9 6 1.2512 -2.4990 0.0298 10 6 0.2998 -2.5341 1.2274 11 7 1.0604 -2.3086 2.4638 12 6 2.2383 -3.6867 0.0940 13 6 2.3720 -4.1057 -1.3903 14 7 1.0028 -3.9174 -1.9330 15 6 1.0802 -3.6687 -3.3847 16 6 0.5961 -2.2247 -3.6313 17 6 0.8094 -1.5443 -2.2536 18 6 0.4689 -2.6960 -1.2787 19 1 -0.6026 -2.7753 -1.0952 20 1 -0.4850 0.8401 0.0004 21 1 -0.1897 -3.5069 1.2742 22 1 -0.4529 -1.7536 1.1165 23 1 0.4539 -2.3276 3.2700 24 1 1.8065 -2.9815 2.5571 25 1 3.2011 -3.3670 0.4929 26 1 1.8255 -4.4995 0.6916 27 1 3.0816 -3.4604 -1.9082 28 1 2.6774 -5.1491 -1.4679 29 1 2.1101 -3.7771 -3.7246 30 1 0.4372 -4.3706 -3.9156 31 1 -0.4582 -2.2137 -3.9073 32 1 1.1991 -1.7390 -4.3984 33 1 0.1249 -0.7063 -2.1220 34 1 1.8441 -1.2236 -2.1326 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:51 Heat of formation + Delta-G solvation = -4.802273 kcal Electronic energy + Delta-G solvation = -15332.963721 eV Core-core repulsion = 13071.754032 eV Total energy + Delta-G solvation = -2261.209689 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.01064 -36.59601 -34.32828 -33.28835 -31.09995 -28.64359 -27.39146 -26.40344 -23.65628 -21.55865 -20.95152 -20.32252 -17.97203 -16.96080 -16.53074 -16.35573 -15.73945 -14.92516 -14.76171 -14.37640 -14.11720 -13.87988 -13.36764 -13.22961 -12.89881 -12.67063 -12.30630 -12.24063 -11.95056 -11.85990 -11.70549 -11.32022 -10.90799 -10.68766 -10.64718 -10.08511 -9.19274 -9.04552 -7.86630 -5.87629 1.42541 1.48937 1.54247 2.55097 3.39234 3.45513 3.96129 4.02903 4.25161 4.39666 4.42991 4.49030 4.69288 4.74987 4.84142 4.86863 4.93652 5.09511 5.14525 5.18000 5.31904 5.37217 5.46151 5.68683 5.70400 5.78827 5.97383 6.11050 6.25575 6.36489 6.52651 6.81344 7.02412 7.11166 7.69765 9.15033 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.028150 B = 0.016584 C = 0.012703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.437435 B = 1687.951214 C = 2203.619228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.046 3.954 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.467 4.467 8 H 0.037 0.963 9 C 0.064 3.936 10 C 0.087 3.913 11 N -0.832 5.832 12 C -0.113 4.113 13 C 0.041 3.959 14 N -0.523 5.523 15 C 0.036 3.964 16 C -0.150 4.150 17 C -0.110 4.110 18 C 0.088 3.912 19 H 0.045 0.955 20 H 0.251 0.749 21 H -0.021 1.021 22 H 0.074 0.926 23 H 0.327 0.673 24 H 0.329 0.671 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -5.767 -3.045 6.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.153 4.153 3 Si 0.752 3.248 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.062 3.938 10 C -0.044 4.044 11 N -0.360 5.360 12 C -0.151 4.151 13 C -0.087 4.087 14 N -0.247 5.247 15 C -0.093 4.093 16 C -0.188 4.188 17 C -0.149 4.149 18 C -0.020 4.020 19 H 0.063 0.937 20 H 0.061 0.939 21 H -0.003 1.003 22 H 0.093 0.907 23 H 0.139 0.861 24 H 0.141 0.859 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.775 -5.433 -3.274 6.587 hybrid contribution 0.377 0.983 0.286 1.091 sum 2.151 -4.450 -2.988 5.776 Atomic orbital electron populations 1.69943 1.06227 1.25629 1.51867 1.25097 0.95068 0.99931 0.95230 0.86059 0.79368 0.82642 0.76708 1.20192 1.21497 1.21934 1.20787 0.91351 0.90538 1.47891 0.94518 1.18989 0.91681 0.92767 0.90331 1.21750 0.96682 0.95431 0.90536 1.58501 1.15417 1.58397 1.03703 1.22564 0.99577 0.97445 0.95502 1.23190 0.90088 1.00077 0.95302 1.66246 1.18532 1.35848 1.04028 1.22965 1.00665 0.95974 0.89661 1.22952 1.00820 0.96441 0.98621 1.22829 1.02045 0.98168 0.91822 1.22889 0.96757 0.86795 0.95597 0.93673 0.93893 1.00278 0.90745 0.86142 0.85888 0.92278 0.92889 0.94623 0.89802 0.92051 0.90252 0.92152 0.91030 0.92382 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.73 8.99 21.45 0.19 -47.54 16 2 C 0.05 2.36 3.81 84.66 0.32 2.68 16 3 Si 0.92 43.17 29.54 68.60 2.03 45.19 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 7 C -0.47 -23.64 5.45 25.60 0.14 -23.50 16 8 H 0.04 1.93 7.57 -2.91 -0.02 1.91 16 9 C 0.06 2.91 0.41 -52.16 -0.02 2.89 16 10 C 0.09 4.00 5.15 86.30 0.44 4.44 16 11 N -0.83 -34.27 9.13 -186.71 -1.70 -35.97 16 12 C -0.11 -4.46 5.25 31.75 0.17 -4.30 16 13 C 0.04 1.52 6.24 86.62 0.54 2.06 16 14 N -0.52 -20.49 5.86 -850.06 -4.98 -25.47 16 15 C 0.04 1.21 6.79 86.62 0.59 1.80 16 16 C -0.15 -5.38 6.94 31.76 0.22 -5.16 16 17 C -0.11 -4.91 4.46 31.90 0.14 -4.77 16 18 C 0.09 3.99 3.25 45.42 0.15 4.13 16 19 H 0.05 2.24 7.77 -2.39 -0.02 2.22 16 20 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 21 H -0.02 -0.92 8.08 -2.38 -0.02 -0.94 16 22 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 23 H 0.33 11.86 9.08 -89.69 -0.81 11.05 16 24 H 0.33 12.32 8.15 -89.69 -0.73 11.59 16 25 H 0.06 2.33 7.70 -2.39 -0.02 2.31 16 26 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 27 H 0.04 1.34 7.59 -2.39 -0.02 1.32 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.06 1.90 7.25 -2.39 -0.02 1.88 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.89 6.38 -2.39 -0.02 2.87 16 34 H 0.06 3.05 6.09 -2.39 -0.01 3.04 16 Total: -1.00 -54.46 252.91 -2.22 -56.69 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.45 Total: 26.83 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 2.69 Total: -19.72 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -6.49 Total: -108.98 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -54.46 -2.22 -56.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.884 kcal (2) G-P(sol) polarization free energy of solvation -54.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds