Wall clock time and date at job start Mon Mar 30 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 120.00020 * 2 1 4 4 H 1.48494 * 109.47254 * 269.99951 * 3 2 1 5 5 H 1.48496 * 109.47198 * 30.00327 * 3 2 1 6 6 H 1.48508 * 109.46989 * 150.00055 * 3 2 1 7 7 C 1.37874 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00176 * 175.30458 * 7 2 1 9 9 C 1.50701 * 119.99897 * 355.30286 * 7 2 1 10 10 C 1.53004 * 110.26276 * 56.87907 * 9 7 2 11 11 N 1.46898 * 109.46985 * 54.71377 * 10 9 7 12 12 C 1.54567 * 110.30051 * 179.04762 * 9 7 2 13 13 C 1.54813 * 102.89763 * 95.84192 * 12 9 7 14 14 N 1.48495 * 103.68012 * 37.20480 * 13 12 9 15 15 C 1.47488 * 109.42597 * 205.94866 * 14 13 12 16 16 C 1.54272 * 107.37669 * 114.06596 * 15 14 13 17 17 C 1.55139 * 103.03354 * 337.70216 * 16 15 14 18 18 C 1.48482 * 105.94667 * 322.49496 * 14 13 12 19 19 H 1.09000 * 112.19496 * 145.63969 * 18 14 13 20 20 H 0.97000 * 119.99619 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46774 * 174.71253 * 10 9 7 22 22 H 1.09003 * 109.46888 * 294.71041 * 10 9 7 23 23 H 1.00903 * 110.99561 * 175.65899 * 11 10 9 24 24 H 1.00893 * 111.00244 * 299.61584 * 11 10 9 25 25 H 1.08996 * 110.72854 * 214.19595 * 12 9 7 26 26 H 1.08994 * 110.72762 * 337.48865 * 12 9 7 27 27 H 1.08996 * 110.58547 * 278.65327 * 13 12 9 28 28 H 1.09002 * 110.71240 * 155.80893 * 13 12 9 29 29 H 1.09000 * 109.86722 * 354.62248 * 15 14 13 30 30 H 1.08998 * 109.97797 * 233.57930 * 15 14 13 31 31 H 1.09000 * 110.70882 * 219.31602 * 16 15 14 32 32 H 1.08996 * 110.85126 * 96.15615 * 16 15 14 33 33 H 1.08998 * 110.97969 * 277.64028 * 17 16 15 34 34 H 1.09000 * 110.98154 * 153.84786 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1955 -0.0771 9 6 1.2549 -2.4970 0.1058 10 6 0.2279 -2.6110 -1.0227 11 7 0.9001 -2.4314 -2.3164 12 6 2.2396 -3.6875 0.0599 13 6 2.4701 -4.0032 1.5579 14 7 1.1380 -3.7761 2.1736 15 6 1.3084 -3.4278 3.5966 16 6 0.8368 -1.9696 3.7737 17 6 0.9585 -1.3862 2.3414 18 6 0.5593 -2.6021 1.4725 19 1 -0.5227 -2.6790 1.3650 20 1 -0.4849 0.8401 -0.0004 21 1 -0.2401 -3.5950 -0.9899 22 1 -0.5344 -1.8418 -0.8993 23 1 0.2567 -2.5723 -3.0808 24 1 1.3369 -1.5237 -2.3741 25 1 1.7906 -4.5401 -0.4494 26 1 3.1735 -3.3974 -0.4214 27 1 3.2096 -3.3247 1.9831 28 1 2.7816 -5.0394 1.6900 29 1 2.3585 -3.5138 3.8759 30 1 0.7048 -4.0902 4.2170 31 1 1.4889 -1.4348 4.4643 32 1 -0.1970 -1.9352 4.1172 33 1 1.9823 -1.0760 2.1320 34 1 0.2643 -0.5584 2.1968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:54 Heat of formation + Delta-G solvation = 9.639923 kcal Electronic energy + Delta-G solvation = -15352.118379 eV Core-core repulsion = 13091.534950 eV Total energy + Delta-G solvation = -2260.583429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.30162 -34.86254 -32.52840 -31.48601 -29.39841 -26.95132 -25.59979 -24.71687 -21.72917 -19.97799 -19.27682 -18.53165 -16.08729 -15.35185 -14.72043 -14.49557 -13.89553 -13.26172 -13.00969 -12.73006 -12.51639 -12.29767 -11.53767 -11.26167 -11.00566 -10.91597 -10.56008 -10.45236 -10.33095 -10.13321 -10.04517 -9.68227 -9.24283 -8.94067 -8.81073 -8.26456 -7.54026 -7.32224 -6.01368 -4.06454 3.22236 3.31179 3.34688 4.34130 5.04692 5.17250 5.53847 5.67667 5.94460 5.99183 6.11161 6.15205 6.26834 6.42174 6.49114 6.51816 6.67818 6.72706 6.92382 6.95427 7.11851 7.14420 7.35476 7.46624 7.50254 7.59046 7.77394 7.86320 7.99496 8.01307 8.43910 8.57773 8.72592 8.95316 9.50055 10.94987 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.016909 C = 0.012823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.066194 B = 1655.512706 C = 2182.994731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.487 4.487 8 H 0.055 0.945 9 C 0.073 3.927 10 C 0.076 3.924 11 N -0.845 5.845 12 C -0.100 4.100 13 C 0.034 3.966 14 N -0.515 5.515 15 C 0.036 3.964 16 C -0.157 4.157 17 C -0.116 4.116 18 C 0.085 3.915 19 H 0.070 0.930 20 H 0.259 0.741 21 H 0.022 0.978 22 H 0.064 0.936 23 H 0.308 0.692 24 H 0.345 0.655 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 -2.633 2.696 3.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.055 4.055 11 N -0.373 5.373 12 C -0.138 4.138 13 C -0.095 4.095 14 N -0.238 5.238 15 C -0.093 4.093 16 C -0.195 4.195 17 C -0.155 4.155 18 C -0.024 4.024 19 H 0.088 0.912 20 H 0.069 0.931 21 H 0.040 0.960 22 H 0.082 0.918 23 H 0.117 0.883 24 H 0.158 0.842 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.141 -3.626 2.902 4.783 hybrid contribution 0.253 2.507 0.105 2.522 sum 1.394 -1.119 3.008 3.499 Atomic orbital electron populations 1.69906 1.05543 1.26105 1.50556 1.24915 0.94796 0.98513 0.95258 0.86769 0.80130 0.84135 0.78153 1.20771 1.21321 1.19998 1.20990 0.92932 0.89808 1.48774 0.92682 1.18896 0.91534 0.92610 0.89765 1.21844 0.97021 0.97456 0.89192 1.58823 1.35924 1.38861 1.03660 1.22449 0.99957 0.98491 0.92951 1.23243 0.90912 0.98600 0.96710 1.66211 1.18644 1.37598 1.01383 1.22879 0.99086 0.95546 0.91781 1.22996 0.99931 0.96251 1.00349 1.23108 1.04009 0.98997 0.89374 1.23075 0.97941 0.86213 0.95123 0.91196 0.93101 0.95965 0.91769 0.88303 0.84152 0.93191 0.92389 0.94408 0.92534 0.93583 0.92206 0.92888 0.92693 0.89876 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.24 9.19 55.43 0.51 -21.73 16 2 C 0.07 1.63 3.47 -17.82 -0.06 1.56 16 3 Si 0.88 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.49 -11.97 4.75 -34.44 -0.16 -12.14 16 8 H 0.05 1.41 7.56 -52.48 -0.40 1.02 16 9 C 0.07 1.70 0.41 -154.46 -0.06 1.63 16 10 C 0.08 1.75 5.14 -3.82 -0.02 1.73 16 11 N -0.85 -17.99 9.34 -10.37 -0.10 -18.09 16 12 C -0.10 -2.17 5.96 -24.95 -0.15 -2.32 16 13 C 0.03 0.67 6.24 -1.99 -0.01 0.66 16 14 N -0.52 -10.78 5.86 -220.03 -1.29 -12.07 16 15 C 0.04 0.67 6.79 -2.84 -0.02 0.65 16 16 C -0.16 -2.97 6.94 -24.93 -0.17 -3.14 16 17 C -0.12 -2.60 4.44 -24.71 -0.11 -2.71 16 18 C 0.08 1.93 3.28 -65.57 -0.22 1.72 16 19 H 0.07 1.72 7.77 -51.93 -0.40 1.31 16 20 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 21 H 0.02 0.50 8.04 -51.93 -0.42 0.09 16 22 H 0.06 1.62 5.95 -51.93 -0.31 1.31 16 23 H 0.31 5.82 9.08 -39.29 -0.36 5.46 16 24 H 0.34 7.79 7.81 -39.30 -0.31 7.48 16 25 H 0.05 1.08 7.81 -51.93 -0.41 0.67 16 26 H 0.06 1.27 7.69 -51.93 -0.40 0.87 16 27 H 0.04 0.77 7.59 -51.93 -0.39 0.38 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.80 7.25 -51.93 -0.38 0.43 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 2.00 6.06 -51.93 -0.31 1.69 16 34 H 0.08 1.91 6.45 -51.93 -0.34 1.57 16 LS Contribution 252.62 15.07 3.81 3.81 Total: -1.00 -24.67 252.62 -8.32 -32.99 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.24 Total: 12.56 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.99 Total: -12.35 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.88 Total: -51.88 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -24.67 -8.32 -32.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.627 kcal (2) G-P(sol) polarization free energy of solvation -24.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds