Wall clock time and date at job start Mon Mar 30 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 120.00020 * 2 1 4 4 H 1.48494 * 109.47254 * 269.99951 * 3 2 1 5 5 H 1.48496 * 109.47198 * 30.00327 * 3 2 1 6 6 H 1.48508 * 109.46989 * 150.00055 * 3 2 1 7 7 C 1.37874 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00176 * 175.30458 * 7 2 1 9 9 C 1.50701 * 119.99897 * 355.30286 * 7 2 1 10 10 C 1.53004 * 110.26276 * 56.87907 * 9 7 2 11 11 N 1.46898 * 109.46985 * 54.71377 * 10 9 7 12 12 C 1.54567 * 110.30051 * 179.04762 * 9 7 2 13 13 C 1.54813 * 102.89763 * 95.84192 * 12 9 7 14 14 N 1.48495 * 103.68012 * 37.20480 * 13 12 9 15 15 C 1.47488 * 109.42597 * 205.94866 * 14 13 12 16 16 C 1.54272 * 107.37669 * 114.06596 * 15 14 13 17 17 C 1.55139 * 103.03354 * 337.70216 * 16 15 14 18 18 C 1.48482 * 105.94667 * 322.49496 * 14 13 12 19 19 H 1.09000 * 112.19496 * 145.63969 * 18 14 13 20 20 H 0.97000 * 119.99619 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46774 * 174.71253 * 10 9 7 22 22 H 1.09003 * 109.46888 * 294.71041 * 10 9 7 23 23 H 1.00903 * 110.99561 * 175.65899 * 11 10 9 24 24 H 1.00893 * 111.00244 * 299.61584 * 11 10 9 25 25 H 1.08996 * 110.72854 * 214.19595 * 12 9 7 26 26 H 1.08994 * 110.72762 * 337.48865 * 12 9 7 27 27 H 1.08996 * 110.58547 * 278.65327 * 13 12 9 28 28 H 1.09002 * 110.71240 * 155.80893 * 13 12 9 29 29 H 1.09000 * 109.86722 * 354.62248 * 15 14 13 30 30 H 1.08998 * 109.97797 * 233.57930 * 15 14 13 31 31 H 1.09000 * 110.70882 * 219.31602 * 16 15 14 32 32 H 1.08996 * 110.85126 * 96.15615 * 16 15 14 33 33 H 1.08998 * 110.97969 * 277.64028 * 17 16 15 34 34 H 1.09000 * 110.98154 * 153.84786 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1955 -0.0771 9 6 1.2549 -2.4970 0.1058 10 6 0.2279 -2.6110 -1.0227 11 7 0.9001 -2.4314 -2.3164 12 6 2.2396 -3.6875 0.0599 13 6 2.4701 -4.0032 1.5579 14 7 1.1380 -3.7761 2.1736 15 6 1.3084 -3.4278 3.5966 16 6 0.8368 -1.9696 3.7737 17 6 0.9585 -1.3862 2.3414 18 6 0.5593 -2.6021 1.4725 19 1 -0.5227 -2.6790 1.3650 20 1 -0.4849 0.8401 -0.0004 21 1 -0.2401 -3.5950 -0.9899 22 1 -0.5344 -1.8418 -0.8993 23 1 0.2567 -2.5723 -3.0808 24 1 1.3369 -1.5237 -2.3741 25 1 1.7906 -4.5401 -0.4494 26 1 3.1735 -3.3974 -0.4214 27 1 3.2096 -3.3247 1.9831 28 1 2.7816 -5.0394 1.6900 29 1 2.3585 -3.5138 3.8759 30 1 0.7048 -4.0902 4.2170 31 1 1.4889 -1.4348 4.4643 32 1 -0.1970 -1.9352 4.1172 33 1 1.9823 -1.0760 2.1320 34 1 0.2643 -0.5584 2.1968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:54 Heat of formation + Delta-G solvation = -7.691613 kcal Electronic energy + Delta-G solvation = -15352.869931 eV Core-core repulsion = 13091.534950 eV Total energy + Delta-G solvation = -2261.334980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.00787 -36.61421 -34.32653 -33.23121 -31.15954 -28.61056 -27.36544 -26.55926 -23.47638 -21.56799 -21.00056 -20.34705 -17.93433 -17.09303 -16.43950 -16.34184 -15.58606 -14.89522 -14.83689 -14.37379 -14.27613 -13.93828 -13.30351 -13.08189 -12.84034 -12.70104 -12.35621 -12.15940 -12.00214 -11.80831 -11.79886 -11.33501 -11.01412 -10.74192 -10.63799 -10.16581 -9.19234 -9.12260 -7.92426 -6.01517 1.39834 1.46510 1.51329 2.46308 3.24574 3.44780 3.96913 4.04768 4.29017 4.39823 4.47334 4.52179 4.70002 4.75233 4.84893 4.90076 5.05046 5.13894 5.16265 5.20863 5.34199 5.44961 5.53689 5.63423 5.71247 5.73563 5.94228 6.05215 6.19804 6.36306 6.54960 6.75882 6.90714 7.12687 7.56295 9.01645 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.016909 C = 0.012823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.066194 B = 1655.512706 C = 2182.994731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.043 3.957 3 Si 0.924 3.076 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.488 4.488 8 H 0.041 0.959 9 C 0.066 3.934 10 C 0.083 3.917 11 N -0.839 5.839 12 C -0.097 4.097 13 C 0.039 3.961 14 N -0.522 5.522 15 C 0.035 3.965 16 C -0.150 4.150 17 C -0.111 4.111 18 C 0.087 3.913 19 H 0.046 0.954 20 H 0.255 0.745 21 H 0.021 0.979 22 H 0.041 0.959 23 H 0.323 0.677 24 H 0.338 0.662 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -3.241 3.498 5.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.157 4.157 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.064 3.936 10 C -0.048 4.048 11 N -0.367 5.367 12 C -0.135 4.135 13 C -0.089 4.089 14 N -0.245 5.245 15 C -0.093 4.093 16 C -0.188 4.188 17 C -0.150 4.150 18 C -0.022 4.022 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.040 0.960 22 H 0.059 0.941 23 H 0.133 0.867 24 H 0.151 0.849 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.752 -4.246 3.699 5.897 hybrid contribution 0.050 2.682 -0.166 2.687 sum 1.802 -1.564 3.533 4.263 Atomic orbital electron populations 1.70010 1.06216 1.26151 1.50997 1.25248 0.95148 1.00147 0.95146 0.86093 0.79061 0.81843 0.77850 1.20709 1.21706 1.20230 1.20982 0.92216 0.90686 1.48784 0.94028 1.18947 0.91852 0.92715 0.90062 1.21692 0.96559 0.96478 0.90087 1.58775 1.36112 1.38223 1.03570 1.22366 0.99108 0.97678 0.94305 1.23242 0.90431 0.99964 0.95244 1.66201 1.19058 1.36611 1.02660 1.22972 1.00463 0.95417 0.90459 1.22949 1.00953 0.96551 0.98349 1.22879 1.01970 0.98221 0.91935 1.22888 0.96588 0.87332 0.95382 0.93534 0.93475 0.96019 0.94115 0.86677 0.84887 0.93288 0.93012 0.94721 0.90030 0.92126 0.90215 0.91002 0.92036 0.91713 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.46 9.19 21.45 0.20 -45.27 16 2 C 0.04 2.11 3.47 84.65 0.29 2.40 16 3 Si 0.92 40.73 29.54 68.60 2.03 42.76 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.49 -23.98 4.75 25.60 0.12 -23.86 16 8 H 0.04 2.13 7.56 -2.91 -0.02 2.11 16 9 C 0.07 3.02 0.41 -52.15 -0.02 3.00 16 10 C 0.08 3.83 5.14 86.31 0.44 4.28 16 11 N -0.84 -35.26 9.34 -186.71 -1.74 -37.00 16 12 C -0.10 -4.06 5.96 31.75 0.19 -3.87 16 13 C 0.04 1.49 6.24 86.61 0.54 2.03 16 14 N -0.52 -20.79 5.86 -850.03 -4.98 -25.77 16 15 C 0.04 1.20 6.79 86.62 0.59 1.79 16 16 C -0.15 -5.33 6.94 31.76 0.22 -5.11 16 17 C -0.11 -4.90 4.44 31.90 0.14 -4.76 16 18 C 0.09 3.92 3.28 45.43 0.15 4.07 16 19 H 0.05 2.30 7.77 -2.39 -0.02 2.28 16 20 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 21 H 0.02 0.98 8.04 -2.38 -0.02 0.96 16 22 H 0.04 2.08 5.95 -2.39 -0.01 2.07 16 23 H 0.32 11.91 9.08 -89.69 -0.81 11.09 16 24 H 0.34 15.17 7.81 -89.70 -0.70 14.47 16 25 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 26 H 0.05 2.21 7.69 -2.39 -0.02 2.19 16 27 H 0.03 1.34 7.59 -2.39 -0.02 1.32 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 1.90 7.25 -2.39 -0.02 1.88 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 3.08 6.06 -2.39 -0.01 3.07 16 34 H 0.05 2.68 6.45 -2.39 -0.02 2.67 16 Total: -1.00 -50.86 252.62 -2.25 -53.11 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.42 Total: 32.21 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 2.67 Total: -20.04 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -6.53 Total: -108.04 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -50.86 -2.25 -53.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.422 kcal (2) G-P(sol) polarization free energy of solvation -50.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds