Wall clock time and date at job start Mon Mar 30 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99439 * 2 1 4 4 H 1.48497 * 109.47203 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47059 * 240.00177 * 3 2 1 6 6 H 1.48495 * 109.46837 * 120.00213 * 3 2 1 7 7 C 1.37873 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99990 * 170.19726 * 7 2 1 9 9 C 1.50699 * 120.00119 * 350.19332 * 7 2 1 10 10 C 1.53002 * 110.31420 * 302.01350 * 9 7 2 11 11 N 1.46902 * 109.47337 * 305.51795 * 10 9 7 12 12 C 1.53935 * 110.35189 * 179.81093 * 9 7 2 13 13 C 1.53754 * 105.62181 * 257.33836 * 12 9 7 14 14 N 1.47481 * 108.24819 * 359.27248 * 13 12 9 15 15 C 1.47906 * 108.99790 * 227.57671 * 14 13 12 16 16 C 1.54269 * 107.41649 * 112.63222 * 15 14 13 17 17 C 1.55253 * 103.10766 * 339.32884 * 16 15 14 18 18 C 1.48288 * 107.65128 * 344.13826 * 14 13 12 19 19 H 1.08997 * 111.67758 * 148.17014 * 18 14 13 20 20 H 0.97005 * 119.99394 * 182.39192 * 1 2 3 21 21 H 1.08994 * 109.47023 * 65.52119 * 10 9 7 22 22 H 1.09001 * 109.46622 * 185.52075 * 10 9 7 23 23 H 1.00894 * 110.99538 * 178.59910 * 11 10 9 24 24 H 1.00900 * 110.99735 * 302.55818 * 11 10 9 25 25 H 1.08993 * 110.19066 * 16.42098 * 12 9 7 26 26 H 1.09002 * 110.18913 * 138.28109 * 12 9 7 27 27 H 1.09000 * 109.69303 * 239.56494 * 13 12 9 28 28 H 1.09006 * 109.73340 * 118.99576 * 13 12 9 29 29 H 1.09002 * 109.85770 * 232.08775 * 15 14 13 30 30 H 1.08994 * 109.86183 * 353.04787 * 15 14 13 31 31 H 1.09007 * 110.69339 * 97.73166 * 16 15 14 32 32 H 1.09004 * 110.69149 * 220.74872 * 16 15 14 33 33 H 1.09000 * 111.06915 * 277.90290 * 17 16 15 34 34 H 1.09001 * 111.07256 * 153.88358 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6966 -1.2126 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0728 -1.2007 -0.1598 9 6 1.2676 -2.4897 0.2212 10 6 0.5334 -2.4603 1.5632 11 7 1.4849 -2.1381 2.6350 12 6 2.2459 -3.6772 0.1720 13 6 2.0461 -4.3213 -1.2097 14 7 0.9984 -3.5677 -1.9234 15 6 0.0286 -4.5224 -2.5029 16 6 -1.3084 -4.3324 -1.7570 17 6 -0.8784 -3.6446 -0.4332 18 6 0.2774 -2.7433 -0.9237 19 1 -0.0828 -1.8098 -1.3560 20 1 -0.4849 -0.8394 0.0351 21 1 -0.2495 -1.7025 1.5325 22 1 0.0872 -3.4362 1.7546 23 1 1.0197 -2.0903 3.5291 24 1 2.2434 -2.8032 2.6571 25 1 3.2716 -3.3243 0.2793 26 1 2.0091 -4.3926 0.9596 27 1 1.7356 -5.3593 -1.0896 28 1 2.9780 -4.2796 -1.7735 29 1 -0.1068 -4.3142 -3.5642 30 1 0.3879 -5.5426 -2.3685 31 1 -1.9786 -3.6877 -2.3258 32 1 -1.7789 -5.2954 -1.5586 33 1 -0.5234 -4.3772 0.2917 34 1 -1.6915 -3.0484 -0.0191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260908066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:58 Heat of formation + Delta-G solvation = 13.230672 kcal Electronic energy + Delta-G solvation = -15267.101270 eV Core-core repulsion = 13006.673547 eV Total energy + Delta-G solvation = -2260.427722 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75422 -35.24618 -32.33560 -31.98672 -29.69088 -27.34777 -25.86681 -23.95869 -22.55774 -20.40569 -19.77659 -18.30600 -17.13291 -15.30583 -15.02213 -14.15505 -13.98890 -13.60443 -13.46372 -13.08586 -12.64338 -12.51893 -11.79064 -11.41333 -11.10752 -11.04454 -10.68927 -10.62292 -10.49836 -10.18312 -10.01946 -9.88070 -9.68958 -9.32853 -8.48427 -7.97158 -7.67008 -7.49040 -6.07329 -3.78633 3.58009 3.62610 3.78153 4.71817 4.80163 5.13756 5.25942 5.51058 5.60287 5.64234 5.75422 5.81392 5.87852 5.96699 6.11592 6.27554 6.29536 6.30569 6.39933 6.48768 6.53391 6.59093 6.73430 6.89574 7.08810 7.27040 7.51759 7.77077 7.82938 8.15933 8.37935 8.47836 8.62686 9.07222 9.86227 11.24289 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.013190 C = 0.012297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.837955 B = 2122.335499 C = 2276.382176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.030 3.970 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.542 4.542 8 H 0.045 0.955 9 C 0.063 3.937 10 C 0.074 3.926 11 N -0.822 5.822 12 C -0.118 4.118 13 C 0.041 3.959 14 N -0.495 5.495 15 C 0.030 3.970 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.067 3.933 19 H 0.111 0.889 20 H 0.270 0.730 21 H 0.076 0.924 22 H -0.011 1.011 23 H 0.317 0.683 24 H 0.324 0.676 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 -8.368 0.159 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.172 4.172 3 Si 0.894 3.106 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.580 4.580 8 H 0.063 0.937 9 C 0.062 3.938 10 C -0.057 4.057 11 N -0.349 5.349 12 C -0.157 4.157 13 C -0.088 4.088 14 N -0.217 5.217 15 C -0.099 4.099 16 C -0.182 4.182 17 C -0.189 4.189 18 C -0.042 4.042 19 H 0.128 0.872 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.006 0.994 23 H 0.128 0.872 24 H 0.136 0.864 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.306 -5.692 -0.738 5.748 hybrid contribution -0.438 -3.261 1.101 3.469 sum -0.744 -8.953 0.363 8.991 Atomic orbital electron populations 1.70889 1.06929 1.30740 1.47730 1.25470 0.96348 1.01990 0.93439 0.83619 0.74971 0.75855 0.76141 1.21339 1.22015 1.21627 1.21473 0.94569 0.90555 1.51368 0.93696 1.18882 0.91112 0.94537 0.89272 1.22043 0.94949 0.95638 0.93064 1.58455 1.13390 1.57238 1.05798 1.22406 1.01549 0.97299 0.94412 1.22862 0.96443 0.94533 0.94935 1.65831 1.09628 1.16502 1.29784 1.23219 0.91986 0.95113 0.99563 1.22847 0.97877 1.00007 0.97492 1.23245 1.00112 0.99248 0.96295 1.23649 0.92075 0.95683 0.92783 0.87155 0.91602 0.90601 0.99356 0.87236 0.86439 0.91627 0.94556 0.95115 0.91802 0.91381 0.93198 0.91469 0.92310 0.92212 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 12.34 55.43 0.68 -26.13 16 2 C 0.03 0.85 5.04 -17.82 -0.09 0.76 16 3 Si 1.06 25.98 29.92 -169.99 -5.09 20.89 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.54 -14.77 7.47 -34.44 -0.26 -15.03 16 8 H 0.04 1.27 7.47 -52.48 -0.39 0.88 16 9 C 0.06 1.49 0.28 -154.92 -0.04 1.45 16 10 C 0.07 1.66 4.40 -3.82 -0.02 1.64 16 11 N -0.82 -17.06 9.07 -10.37 -0.09 -17.15 16 12 C -0.12 -2.45 5.26 -25.85 -0.14 -2.59 16 13 C 0.04 0.79 6.59 -3.11 -0.02 0.77 16 14 N -0.50 -10.46 5.87 -221.62 -1.30 -11.77 16 15 C 0.03 0.52 6.80 -2.61 -0.02 0.50 16 16 C -0.14 -2.38 6.93 -24.87 -0.17 -2.56 16 17 C -0.15 -2.89 4.97 -24.72 -0.12 -3.01 16 18 C 0.07 1.52 2.33 -65.88 -0.15 1.37 16 19 H 0.11 2.95 5.94 -51.93 -0.31 2.64 16 20 H 0.27 7.58 3.96 -40.82 -0.16 7.42 16 21 H 0.08 1.90 5.82 -51.93 -0.30 1.60 16 22 H -0.01 -0.23 6.23 -51.93 -0.32 -0.56 16 23 H 0.32 5.72 9.08 -39.29 -0.36 5.37 16 24 H 0.32 6.19 8.21 -39.29 -0.32 5.87 16 25 H 0.06 1.40 7.53 -51.93 -0.39 1.01 16 26 H 0.04 0.68 7.61 -51.93 -0.40 0.29 16 27 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.78 6.87 -51.93 -0.36 0.43 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.13 6.59 -51.93 -0.34 0.79 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 251.48 15.07 3.79 3.79 Total: -1.00 -29.48 251.48 -7.96 -37.44 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.92 Total: 9.63 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.03 Total: -16.70 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.71 Total: -55.04 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.09 Total: 20.89 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.48 -7.96 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.669 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds