Wall clock time and date at job start Mon Mar 30 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99439 * 2 1 4 4 H 1.48497 * 109.47203 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47059 * 240.00177 * 3 2 1 6 6 H 1.48495 * 109.46837 * 120.00213 * 3 2 1 7 7 C 1.37873 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99990 * 170.19726 * 7 2 1 9 9 C 1.50699 * 120.00119 * 350.19332 * 7 2 1 10 10 C 1.53002 * 110.31420 * 302.01350 * 9 7 2 11 11 N 1.46902 * 109.47337 * 305.51795 * 10 9 7 12 12 C 1.53935 * 110.35189 * 179.81093 * 9 7 2 13 13 C 1.53754 * 105.62181 * 257.33836 * 12 9 7 14 14 N 1.47481 * 108.24819 * 359.27248 * 13 12 9 15 15 C 1.47906 * 108.99790 * 227.57671 * 14 13 12 16 16 C 1.54269 * 107.41649 * 112.63222 * 15 14 13 17 17 C 1.55253 * 103.10766 * 339.32884 * 16 15 14 18 18 C 1.48288 * 107.65128 * 344.13826 * 14 13 12 19 19 H 1.08997 * 111.67758 * 148.17014 * 18 14 13 20 20 H 0.97005 * 119.99394 * 182.39192 * 1 2 3 21 21 H 1.08994 * 109.47023 * 65.52119 * 10 9 7 22 22 H 1.09001 * 109.46622 * 185.52075 * 10 9 7 23 23 H 1.00894 * 110.99538 * 178.59910 * 11 10 9 24 24 H 1.00900 * 110.99735 * 302.55818 * 11 10 9 25 25 H 1.08993 * 110.19066 * 16.42098 * 12 9 7 26 26 H 1.09002 * 110.18913 * 138.28109 * 12 9 7 27 27 H 1.09000 * 109.69303 * 239.56494 * 13 12 9 28 28 H 1.09006 * 109.73340 * 118.99576 * 13 12 9 29 29 H 1.09002 * 109.85770 * 232.08775 * 15 14 13 30 30 H 1.08994 * 109.86183 * 353.04787 * 15 14 13 31 31 H 1.09007 * 110.69339 * 97.73166 * 16 15 14 32 32 H 1.09004 * 110.69149 * 220.74872 * 16 15 14 33 33 H 1.09000 * 111.06915 * 277.90290 * 17 16 15 34 34 H 1.09001 * 111.07256 * 153.88358 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6966 -1.2126 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0728 -1.2007 -0.1598 9 6 1.2676 -2.4897 0.2212 10 6 0.5334 -2.4603 1.5632 11 7 1.4849 -2.1381 2.6350 12 6 2.2459 -3.6772 0.1720 13 6 2.0461 -4.3213 -1.2097 14 7 0.9984 -3.5677 -1.9234 15 6 0.0286 -4.5224 -2.5029 16 6 -1.3084 -4.3324 -1.7570 17 6 -0.8784 -3.6446 -0.4332 18 6 0.2774 -2.7433 -0.9237 19 1 -0.0828 -1.8098 -1.3560 20 1 -0.4849 -0.8394 0.0351 21 1 -0.2495 -1.7025 1.5325 22 1 0.0872 -3.4362 1.7546 23 1 1.0197 -2.0903 3.5291 24 1 2.2434 -2.8032 2.6571 25 1 3.2716 -3.3243 0.2793 26 1 2.0091 -4.3926 0.9596 27 1 1.7356 -5.3593 -1.0896 28 1 2.9780 -4.2796 -1.7735 29 1 -0.1068 -4.3142 -3.5642 30 1 0.3879 -5.5426 -2.3685 31 1 -1.9786 -3.6877 -2.3258 32 1 -1.7789 -5.2954 -1.5586 33 1 -0.5234 -4.3772 0.2917 34 1 -1.6915 -3.0484 -0.0191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:57 Heat of formation + Delta-G solvation = -9.030711 kcal Electronic energy + Delta-G solvation = -15268.066595 eV Core-core repulsion = 13006.673547 eV Total energy + Delta-G solvation = -2261.393048 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38087 -36.95275 -34.04387 -33.77500 -31.36762 -28.90426 -27.64637 -25.81652 -24.27699 -21.88084 -21.36368 -20.12073 -19.02360 -16.94154 -16.57785 -15.86709 -15.63786 -15.53600 -14.99941 -14.64879 -14.38143 -14.15301 -13.50217 -13.13533 -12.79834 -12.70330 -12.48361 -12.20971 -12.09088 -11.89448 -11.82998 -11.53353 -11.31300 -11.07633 -10.49395 -10.01845 -9.22011 -9.15298 -8.23414 -5.94693 1.58181 1.66502 1.82744 2.71409 3.28728 3.45124 3.71095 3.80013 4.02936 4.16054 4.23236 4.25648 4.35227 4.52238 4.60730 4.70127 4.73827 4.75918 4.89813 4.96604 5.00728 5.07093 5.15607 5.26048 5.41755 5.52000 5.73066 6.12870 6.28240 6.36756 6.48894 6.64933 6.88203 6.98082 7.75107 9.10130 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033411 B = 0.013190 C = 0.012297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.837955 B = 2122.335499 C = 2276.382176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.014 4.014 3 Si 1.098 2.902 4 H -0.292 1.292 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.024 0.976 9 C 0.052 3.948 10 C 0.087 3.913 11 N -0.836 5.836 12 C -0.113 4.113 13 C 0.043 3.957 14 N -0.524 5.524 15 C 0.028 3.972 16 C -0.135 4.135 17 C -0.143 4.143 18 C 0.068 3.932 19 H 0.063 0.937 20 H 0.269 0.731 21 H 0.043 0.957 22 H 0.010 0.990 23 H 0.333 0.667 24 H 0.335 0.665 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -10.297 0.266 10.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.212 4.212 3 Si 0.924 3.076 4 H -0.218 1.218 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.043 0.957 9 C 0.051 3.949 10 C -0.045 4.045 11 N -0.365 5.365 12 C -0.152 4.152 13 C -0.085 4.085 14 N -0.246 5.246 15 C -0.100 4.100 16 C -0.173 4.173 17 C -0.182 4.182 18 C -0.041 4.041 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.061 0.939 22 H 0.028 0.972 23 H 0.145 0.855 24 H 0.148 0.852 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.253 -7.641 -0.627 7.671 hybrid contribution -0.423 -2.675 1.053 2.906 sum -0.676 -10.315 0.426 10.346 Atomic orbital electron populations 1.70919 1.07530 1.30965 1.49518 1.26388 0.96574 1.04650 0.93567 0.83159 0.74293 0.73359 0.76742 1.21760 1.21076 1.20692 1.21716 0.93720 0.92593 1.50494 0.95722 1.18924 0.91924 0.93922 0.90161 1.21785 0.94252 0.95531 0.92933 1.58337 1.13809 1.57954 1.06423 1.22322 0.99948 0.96717 0.96185 1.22873 0.96184 0.95657 0.93818 1.65700 1.10954 1.18172 1.29815 1.23308 0.91527 0.95499 0.99668 1.22820 0.97680 1.01296 0.95540 1.23115 0.98481 0.98742 0.97838 1.23258 0.93323 0.94983 0.92538 0.91936 0.91775 0.93873 0.97190 0.85505 0.85215 0.92951 0.92370 0.92180 0.91778 0.90824 0.90723 0.91730 0.88983 0.91241 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 12.34 21.45 0.26 -56.16 16 2 C -0.01 -0.77 5.04 84.65 0.43 -0.35 16 3 Si 1.10 53.14 29.92 68.60 2.05 55.19 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.55 -30.20 7.47 25.60 0.19 -30.01 16 8 H 0.02 1.42 7.47 -2.91 -0.02 1.39 16 9 C 0.05 2.42 0.28 -52.45 -0.01 2.41 16 10 C 0.09 3.79 4.40 86.30 0.38 4.17 16 11 N -0.84 -33.76 9.07 -186.72 -1.69 -35.45 16 12 C -0.11 -4.49 5.26 31.16 0.16 -4.33 16 13 C 0.04 1.55 6.59 86.45 0.57 2.13 16 14 N -0.52 -21.30 5.87 -855.07 -5.02 -26.32 16 15 C 0.03 0.89 6.80 86.54 0.59 1.48 16 16 C -0.13 -4.07 6.93 31.80 0.22 -3.85 16 17 C -0.14 -5.24 4.97 31.90 0.16 -5.08 16 18 C 0.07 3.08 2.33 45.34 0.11 3.18 16 19 H 0.06 3.44 5.94 -2.39 -0.01 3.42 16 20 H 0.27 15.56 3.96 -92.70 -0.37 15.19 16 21 H 0.04 2.18 5.82 -2.39 -0.01 2.17 16 22 H 0.01 0.40 6.23 -2.39 -0.01 0.39 16 23 H 0.33 11.56 9.08 -89.70 -0.81 10.74 16 24 H 0.34 12.23 8.21 -89.69 -0.74 11.49 16 25 H 0.05 2.18 7.53 -2.39 -0.02 2.16 16 26 H 0.06 2.02 7.61 -2.39 -0.02 2.00 16 27 H 0.06 1.83 6.89 -2.39 -0.02 1.81 16 28 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.00 6.87 -2.39 -0.02 1.98 16 31 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.40 6.59 -2.39 -0.02 2.39 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -63.71 251.48 -1.65 -65.36 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.04 Total: 27.64 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 2.79 Total: -30.26 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.45 Total: -117.93 kcal Atomic # 14 Polarization: 53.14 SS G_CDS: 2.05 Total: 55.19 kcal Total: -63.71 -1.65 -65.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.329 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds