Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99658 * 2 1 4 4 H 1.48498 * 109.47612 * 270.00371 * 3 2 1 5 5 H 1.48505 * 109.47212 * 30.00675 * 3 2 1 6 6 H 1.48502 * 109.47147 * 150.00097 * 3 2 1 7 7 C 1.37872 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00030 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00026 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47176 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47352 * 54.99707 * 10 9 7 12 12 N 1.46905 * 109.46947 * 294.99937 * 10 9 7 13 13 C 1.53001 * 109.47190 * 175.00119 * 10 9 7 14 14 N 1.46897 * 109.47024 * 174.99743 * 13 10 9 15 15 C 1.48562 * 111.00068 * 169.99913 * 14 13 10 16 16 C 1.54380 * 104.59541 * 200.96012 * 15 14 13 17 17 H 1.09000 * 117.60217 * 244.71430 * 16 15 14 18 18 C 1.52998 * 118.12611 * 89.19950 * 16 15 14 19 19 C 1.54256 * 105.05966 * 23.85224 * 16 15 14 20 20 H 1.09000 * 121.78606 * 222.12366 * 19 16 15 21 21 C 1.48561 * 111.00323 * 54.58018 * 14 13 10 22 22 H 0.96998 * 120.00498 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47177 * 60.00199 * 9 7 2 24 24 H 1.09001 * 109.47215 * 299.99796 * 9 7 2 25 25 H 1.00901 * 110.99869 * 176.04901 * 12 10 9 26 26 H 1.00896 * 110.99543 * 300.00023 * 12 10 9 27 27 H 1.08997 * 109.47063 * 294.99924 * 13 10 9 28 28 H 1.09001 * 109.47022 * 54.99875 * 13 10 9 29 29 H 1.09000 * 110.41281 * 319.73864 * 15 14 13 30 30 H 1.09000 * 110.41294 * 82.17721 * 15 14 13 31 31 H 1.09003 * 117.44998 * 15.97162 * 18 16 15 32 32 H 1.08998 * 117.44196 * 160.73201 * 18 16 15 33 33 H 1.08993 * 110.41249 * 277.82402 * 21 14 13 34 34 H 1.09001 * 110.40811 * 40.25984 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 1 3.5867 -3.1749 -0.8442 12 7 3.6335 -3.2940 1.2527 13 6 5.5464 -2.6381 -0.1286 14 7 6.0460 -4.0143 -0.0095 15 6 7.4869 -4.0901 -0.3635 16 6 7.7229 -5.5741 -0.7177 17 1 8.3933 -6.1460 -0.0762 18 6 7.5120 -6.0117 -2.1685 19 6 6.3378 -6.1127 -1.1310 20 1 5.9828 -7.0916 -0.8088 21 6 5.3814 -4.9089 -0.9918 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6799 -0.8911 25 1 3.9025 -4.2665 1.2496 26 1 4.0246 -2.8131 2.0488 27 1 5.8310 -2.2308 -1.0987 28 1 5.9772 -2.0253 0.6633 29 1 7.7010 -3.4554 -1.2234 30 1 8.1032 -3.7996 0.4873 31 1 7.4683 -5.2307 -2.9276 32 1 7.9745 -6.9471 -2.4833 33 1 4.4123 -5.2349 -0.6141 34 1 5.2659 -4.4023 -1.9500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260908168.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = 13.683472 kcal Electronic energy + Delta-G solvation = -14043.189407 eV Core-core repulsion = 11782.781320 eV Total energy + Delta-G solvation = -2260.408087 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84795 -37.73555 -34.91758 -33.73807 -30.73589 -29.40541 -28.45712 -25.42624 -23.13450 -21.97949 -21.46828 -20.45266 -18.79221 -17.50660 -16.98032 -16.27999 -15.89355 -15.56559 -15.26104 -14.66153 -14.51604 -14.06686 -13.90771 -13.34663 -13.13551 -13.01160 -12.43245 -12.39244 -12.20014 -12.12632 -11.63501 -11.57973 -11.25079 -11.04377 -10.84776 -10.70482 -9.51858 -9.20414 -8.19412 -6.19802 1.36186 1.38715 1.49671 2.40745 2.60279 2.92730 3.14374 3.52127 3.69292 3.89978 4.00374 4.08396 4.21212 4.29415 4.34967 4.53770 4.53921 4.63503 4.81781 4.86641 4.88547 4.90286 5.01474 5.17100 5.20559 5.28055 5.52128 5.68967 5.77958 5.94370 6.41250 6.62559 6.87764 6.93351 7.41319 8.98176 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.058933 B = 0.006660 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.998083 B = 4203.391729 C = 4368.427872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.004 4.004 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.496 4.496 8 H 0.033 0.967 9 C -0.004 4.004 10 C 0.119 3.881 11 H 0.053 0.947 12 N -0.830 5.830 13 C 0.017 3.983 14 N -0.512 5.512 15 C 0.055 3.945 16 C -0.158 4.158 17 H 0.129 0.871 18 C -0.142 4.142 19 C -0.176 4.176 20 H 0.128 0.872 21 C 0.056 3.944 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.340 0.660 26 H 0.336 0.664 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.800 -9.773 -2.288 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.199 4.199 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.535 4.535 8 H 0.051 0.949 9 C -0.042 4.042 10 C 0.007 3.993 11 H 0.072 0.928 12 N -0.359 5.359 13 C -0.113 4.113 14 N -0.236 5.236 15 C -0.073 4.073 16 C -0.177 4.177 17 H 0.147 0.853 18 C -0.179 4.179 19 C -0.194 4.194 20 H 0.146 0.854 21 C -0.071 4.071 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.154 0.846 26 H 0.148 0.852 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.795 -9.630 -1.921 20.324 hybrid contribution 0.746 1.025 -0.670 1.434 sum 18.540 -8.605 -2.591 20.604 Atomic orbital electron populations 1.70084 1.08273 1.27645 1.54018 1.26003 0.95592 1.03269 0.95080 0.85681 0.79418 0.78686 0.78887 1.19431 1.21370 1.17174 1.21268 0.91541 0.92806 1.47854 0.94878 1.19547 0.94736 0.93732 0.96198 1.21144 0.90036 0.95415 0.92729 0.92847 1.58718 1.67425 1.06359 1.03426 1.23098 0.97538 0.90131 1.00579 1.65560 1.03554 1.07240 1.47287 1.22735 0.89290 0.95129 1.00105 1.23462 1.00113 0.95367 0.98757 0.85302 1.23797 0.99358 1.03524 0.91190 1.24072 0.89678 0.99064 1.06619 0.85366 1.22598 0.97946 0.92763 0.93825 0.92911 0.96263 0.96329 0.84617 0.85162 0.94656 0.90389 0.93932 0.89033 0.89405 0.85857 0.90448 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.19 13.96 21.44 0.30 -61.89 16 2 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 3 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.50 -29.39 9.39 25.60 0.24 -29.15 16 8 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 9 C 0.00 -0.19 3.69 29.85 0.11 -0.08 16 10 C 0.12 4.67 2.31 44.91 0.10 4.78 16 11 H 0.05 2.26 7.12 -2.39 -0.02 2.25 16 12 N -0.83 -31.73 8.90 -168.67 -1.50 -33.23 16 13 C 0.02 0.53 4.72 86.30 0.41 0.93 16 14 N -0.51 -13.65 4.80 -881.51 -4.23 -17.89 16 15 C 0.05 1.19 6.29 86.45 0.54 1.73 16 16 C -0.16 -2.86 6.98 -9.90 -0.07 -2.93 16 17 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 18 C -0.14 -2.29 10.29 32.00 0.33 -1.96 16 19 C -0.18 -3.54 7.29 -8.49 -0.06 -3.60 16 20 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 21 C 0.06 1.47 4.78 86.45 0.41 1.89 16 22 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 23 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 24 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 25 H 0.34 11.49 7.44 -89.69 -0.67 10.82 16 26 H 0.34 12.16 9.00 -89.70 -0.81 11.35 16 27 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 0.94 7.81 -2.39 -0.02 0.92 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.21 7.00 -2.39 -0.02 2.19 16 34 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 Total: -1.00 -67.37 271.27 -1.51 -68.88 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -0.45 Total: 25.02 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 2.48 Total: -28.20 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -5.43 Total: -113.00 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -67.37 -1.51 -68.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260908168.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds