Wall clock time and date at job start Mon Mar 30 2020 02:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48498 * 109.46983 * 270.00153 * 3 2 1 5 5 H 1.48492 * 109.47261 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47313 * 150.00480 * 3 2 1 7 7 C 1.37878 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.47848 * 111.00008 * 49.15702 * 10 9 7 12 12 C 1.54902 * 104.79554 * 146.36351 * 11 10 9 13 13 C 1.55150 * 101.65415 * 322.93341 * 12 11 10 14 14 H 1.08995 * 110.70029 * 277.26651 * 13 12 11 15 15 N 1.46901 * 110.70620 * 154.03738 * 13 12 11 16 16 C 1.47477 * 111.00270 * 82.18334 * 15 13 12 17 17 C 1.53508 * 87.93197 * 138.70462 * 16 15 13 18 18 C 1.47478 * 110.99953 * 178.15644 * 15 13 12 19 19 C 1.47443 * 111.00415 * 170.00159 * 10 9 7 20 20 H 0.97000 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47033 * 60.00348 * 9 7 2 22 22 H 1.08995 * 109.47255 * 300.00466 * 9 7 2 23 23 H 1.09000 * 110.37453 * 265.19236 * 11 10 9 24 24 H 1.09001 * 110.37197 * 27.42460 * 11 10 9 25 25 H 1.09004 * 110.99408 * 204.84019 * 12 11 10 26 26 H 1.09001 * 110.99286 * 81.01965 * 12 11 10 27 27 H 1.09002 * 113.47647 * 253.47130 * 16 15 13 28 28 H 1.09000 * 113.47514 * 23.93493 * 16 15 13 29 29 H 1.09004 * 114.16555 * 220.33254 * 17 16 15 30 30 H 1.09000 * 114.17188 * 87.62384 * 17 16 15 31 31 H 1.09000 * 113.47373 * 336.06237 * 18 15 13 32 32 H 1.08998 * 113.47690 * 106.53087 * 18 15 13 33 33 H 1.09001 * 109.88854 * 117.33393 * 19 10 9 34 34 H 1.09011 * 110.01766 * 356.22559 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 3.2361 -3.4318 1.0437 12 6 3.5691 -4.8651 1.5275 13 6 2.1755 -5.5450 1.4760 14 1 1.6041 -5.3213 2.3768 15 7 2.3120 -6.9961 1.2929 16 6 2.5793 -7.6683 2.5781 17 6 1.6086 -8.7733 2.1385 18 6 0.9923 -7.6545 1.2869 19 6 1.5188 -4.8982 0.2384 20 1 -0.4851 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 4.1227 -2.9578 0.6226 24 1 2.8412 -2.8342 1.8653 25 1 3.9602 -4.8528 2.5449 26 1 4.2674 -5.3542 0.8483 27 1 3.6087 -8.0110 2.6830 28 1 2.2319 -7.1041 3.4436 29 1 0.9585 -9.1384 2.9337 30 1 2.0732 -9.5709 1.5589 31 1 0.2214 -7.0867 1.8079 32 1 0.6767 -7.9857 0.2976 33 1 1.6377 -5.5495 -0.6275 34 1 0.4596 -4.7245 0.4289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983406.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:38 Heat of formation + Delta-G solvation = 42.614618 kcal Electronic energy + Delta-G solvation = -14131.548474 eV Core-core repulsion = 11872.394936 eV Total energy + Delta-G solvation = -2259.153539 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.14368 -37.47170 -33.06086 -31.11266 -28.95972 -27.25828 -25.76501 -25.07207 -22.47685 -20.42185 -20.03096 -19.54173 -16.53812 -16.06626 -15.73657 -15.11071 -14.28577 -13.96119 -13.55796 -13.15119 -12.78888 -12.51067 -12.40917 -11.84224 -11.49580 -11.33281 -10.98234 -10.88549 -10.72053 -10.55232 -10.34943 -10.31302 -10.20505 -9.79269 -9.08784 -8.80686 -8.47059 -7.17097 -6.03897 -4.05342 3.31943 3.37644 3.41151 4.04390 4.40461 4.43683 4.81860 4.90310 5.04658 5.24389 5.31265 5.39338 5.47581 5.49525 5.59874 5.69625 5.74404 5.97930 6.03036 6.08401 6.12798 6.25078 6.40053 6.54261 6.73847 6.75148 7.24627 7.25385 7.42631 7.78677 8.03141 8.24325 8.55020 9.02640 9.59252 11.07556 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070617 B = 0.006528 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.407778 B = 4288.129887 C = 4518.225431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.187 3.813 10 N -0.528 5.528 11 C 0.062 3.938 12 C -0.119 4.119 13 C 0.027 3.973 14 H 0.050 0.950 15 N -0.460 5.460 16 C -0.003 4.003 17 C -0.148 4.148 18 C -0.003 4.003 19 C 0.054 3.946 20 H 0.261 0.739 21 H 0.031 0.969 22 H -0.010 1.010 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 -13.714 5.441 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.061 3.939 10 N -0.253 5.253 11 C -0.066 4.066 12 C -0.158 4.158 13 C -0.083 4.083 14 H 0.068 0.932 15 N -0.182 5.182 16 C -0.132 4.132 17 C -0.185 4.185 18 C -0.132 4.132 19 C -0.075 4.075 20 H 0.071 0.929 21 H 0.049 0.951 22 H 0.008 0.992 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.747 -13.603 4.368 14.770 hybrid contribution -0.681 1.297 1.480 2.082 sum 3.065 -12.307 5.848 13.966 Atomic orbital electron populations 1.69960 1.06100 1.26791 1.50892 1.24997 0.94860 0.99361 0.95310 0.86496 0.79691 0.83043 0.78194 1.20540 1.21302 1.19837 1.21239 0.93525 0.90145 1.50343 0.91789 1.19930 0.90465 0.87492 0.95967 1.63695 1.14454 1.01986 1.45151 1.22767 0.96337 0.93829 0.93699 1.22746 0.95764 0.96721 1.00553 1.23546 0.97851 0.88649 0.98281 0.93202 1.69025 1.18797 1.04156 1.26262 1.23741 1.00846 0.95695 0.92916 1.23120 0.98695 0.96911 0.99806 1.23708 0.92911 0.95455 1.01111 1.22755 0.96314 0.92683 0.95704 0.92907 0.95062 0.99211 0.91006 0.93375 0.92157 0.90405 0.90007 0.91655 0.90995 0.89086 0.91494 0.89771 0.90990 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.71 8.35 -34.44 -0.29 -15.00 16 8 H 0.06 1.80 6.67 -52.49 -0.35 1.45 16 9 C 0.19 5.06 4.59 -4.98 -0.02 5.03 16 10 N -0.53 -12.11 5.31 -232.70 -1.24 -13.34 16 11 C 0.06 1.27 5.39 -2.30 -0.01 1.26 16 12 C -0.12 -1.99 6.63 -24.59 -0.16 -2.15 16 13 C 0.03 0.44 2.21 -65.89 -0.15 0.29 16 14 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 15 N -0.46 -6.53 6.12 -234.45 -1.44 -7.96 16 16 C 0.00 -0.03 7.58 -7.55 -0.06 -0.09 16 17 C -0.15 -1.44 8.47 -26.20 -0.22 -1.66 16 18 C 0.00 -0.03 7.21 -7.55 -0.05 -0.09 16 19 C 0.05 1.06 6.06 -2.84 -0.02 1.04 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 22 H -0.01 -0.28 7.96 -51.93 -0.41 -0.70 16 23 H 0.07 1.48 7.69 -51.93 -0.40 1.08 16 24 H 0.05 1.06 7.55 -51.93 -0.39 0.67 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.73 7.65 -51.93 -0.40 0.33 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.81 7.87 -51.93 -0.41 0.41 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.38 8.03 -51.93 -0.42 0.96 16 34 H 0.04 0.88 7.50 -51.92 -0.39 0.49 16 LS Contribution 271.41 15.07 4.09 4.09 Total: -1.00 -30.27 271.41 -9.60 -39.88 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.66 Total: -3.31 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.08 Total: -9.84 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -1.93 Total: -47.63 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.27 -9.60 -39.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983406.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.490 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds