Wall clock time and date at job start Mon Mar 30 2020 02:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48498 * 109.46983 * 270.00153 * 3 2 1 5 5 H 1.48492 * 109.47261 * 30.00075 * 3 2 1 6 6 H 1.48498 * 109.47313 * 150.00480 * 3 2 1 7 7 C 1.37878 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99898 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99897 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.47848 * 111.00008 * 49.15702 * 10 9 7 12 12 C 1.54902 * 104.79554 * 146.36351 * 11 10 9 13 13 C 1.55150 * 101.65415 * 322.93341 * 12 11 10 14 14 H 1.08995 * 110.70029 * 277.26651 * 13 12 11 15 15 N 1.46901 * 110.70620 * 154.03738 * 13 12 11 16 16 C 1.47477 * 111.00270 * 82.18334 * 15 13 12 17 17 C 1.53508 * 87.93197 * 138.70462 * 16 15 13 18 18 C 1.47478 * 110.99953 * 178.15644 * 15 13 12 19 19 C 1.47443 * 111.00415 * 170.00159 * 10 9 7 20 20 H 0.97000 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47033 * 60.00348 * 9 7 2 22 22 H 1.08995 * 109.47255 * 300.00466 * 9 7 2 23 23 H 1.09000 * 110.37453 * 265.19236 * 11 10 9 24 24 H 1.09001 * 110.37197 * 27.42460 * 11 10 9 25 25 H 1.09004 * 110.99408 * 204.84019 * 12 11 10 26 26 H 1.09001 * 110.99286 * 81.01965 * 12 11 10 27 27 H 1.09002 * 113.47647 * 253.47130 * 16 15 13 28 28 H 1.09000 * 113.47514 * 23.93493 * 16 15 13 29 29 H 1.09004 * 114.16555 * 220.33254 * 17 16 15 30 30 H 1.09000 * 114.17188 * 87.62384 * 17 16 15 31 31 H 1.09000 * 113.47373 * 336.06237 * 18 15 13 32 32 H 1.08998 * 113.47690 * 106.53087 * 18 15 13 33 33 H 1.09001 * 109.88854 * 117.33393 * 19 10 9 34 34 H 1.09011 * 110.01766 * 356.22559 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 3.2361 -3.4318 1.0437 12 6 3.5691 -4.8651 1.5275 13 6 2.1755 -5.5450 1.4760 14 1 1.6041 -5.3213 2.3768 15 7 2.3120 -6.9961 1.2929 16 6 2.5793 -7.6683 2.5781 17 6 1.6086 -8.7733 2.1385 18 6 0.9923 -7.6545 1.2869 19 6 1.5188 -4.8982 0.2384 20 1 -0.4851 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 4.1227 -2.9578 0.6226 24 1 2.8412 -2.8342 1.8653 25 1 3.9602 -4.8528 2.5449 26 1 4.2674 -5.3542 0.8483 27 1 3.6087 -8.0110 2.6830 28 1 2.2319 -7.1041 3.4436 29 1 0.9585 -9.1384 2.9337 30 1 2.0732 -9.5709 1.5589 31 1 0.2214 -7.0867 1.8079 32 1 0.6767 -7.9857 0.2976 33 1 1.6377 -5.5495 -0.6275 34 1 0.4596 -4.7245 0.4289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983406.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:38 Heat of formation + Delta-G solvation = 19.836086 kcal Electronic energy + Delta-G solvation = -14132.536226 eV Core-core repulsion = 11872.394936 eV Total energy + Delta-G solvation = -2260.141290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26805 -39.02639 -35.13219 -32.81699 -30.40567 -29.03163 -26.85260 -26.53021 -24.43667 -21.79845 -21.51725 -20.72222 -18.50491 -17.41302 -17.18110 -16.60556 -15.96627 -15.37914 -15.07462 -14.78802 -14.41798 -14.16487 -13.56401 -13.32895 -13.21379 -12.82596 -12.67614 -12.47872 -12.25164 -12.05772 -11.91340 -11.76183 -11.45874 -11.43673 -11.18809 -10.68173 -9.88043 -9.05298 -8.25583 -6.36376 1.39198 1.41478 1.52376 2.37751 2.98672 3.07847 3.34768 3.41699 3.71206 3.83603 4.01460 4.08721 4.32164 4.43524 4.47958 4.58412 4.68684 4.74915 4.79079 4.88844 4.93930 4.99074 5.01519 5.09294 5.18387 5.29535 5.32639 5.36794 5.60843 5.92818 6.11499 6.25179 6.54101 6.80331 7.34127 8.86832 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.070617 B = 0.006528 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.407778 B = 4288.129887 C = 4518.225431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.204 3.796 10 N -0.541 5.541 11 C 0.060 3.940 12 C -0.104 4.104 13 C 0.039 3.961 14 H 0.048 0.952 15 N -0.475 5.475 16 C -0.005 4.005 17 C -0.128 4.128 18 C -0.012 4.012 19 C 0.054 3.946 20 H 0.266 0.734 21 H -0.001 1.001 22 H -0.037 1.037 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.635 -14.544 6.330 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.077 3.923 10 N -0.266 5.266 11 C -0.068 4.068 12 C -0.142 4.142 13 C -0.071 4.071 14 H 0.065 0.935 15 N -0.198 5.198 16 C -0.133 4.133 17 C -0.166 4.166 18 C -0.141 4.141 19 C -0.074 4.074 20 H 0.074 0.926 21 H 0.017 0.983 22 H -0.020 1.020 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.177 -14.463 5.260 16.237 hybrid contribution -1.162 1.482 1.179 2.222 sum 4.015 -12.981 6.440 15.036 Atomic orbital electron populations 1.70093 1.07879 1.28070 1.51447 1.25976 0.95780 1.03430 0.94465 0.85326 0.78557 0.77860 0.78563 1.19758 1.20569 1.18607 1.21539 0.93784 0.91077 1.50690 0.91520 1.19558 0.90481 0.89106 0.93111 1.63576 1.14233 1.02005 1.46760 1.22771 0.95190 0.96421 0.92425 1.22642 0.95951 0.93612 1.01988 1.23335 0.97112 0.90463 0.96215 0.93456 1.69041 1.20195 1.02224 1.28312 1.23848 1.02060 0.95787 0.91632 1.23075 0.97867 0.96052 0.99600 1.23817 0.92123 0.96332 1.01791 1.22733 0.95647 0.91375 0.97667 0.92558 0.98261 1.01957 0.91273 0.95300 0.89489 0.89862 0.88886 0.91302 0.88942 0.88084 0.91919 0.89799 0.90686 0.95107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.53 -31.14 8.35 25.60 0.21 -30.93 16 8 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 9 C 0.20 11.53 4.59 85.56 0.39 11.92 16 10 N -0.54 -25.42 5.31 -890.12 -4.72 -30.14 16 11 C 0.06 2.46 5.39 86.77 0.47 2.93 16 12 C -0.10 -3.27 6.63 31.98 0.21 -3.06 16 13 C 0.04 1.24 2.21 46.10 0.10 1.34 16 14 H 0.05 1.54 7.67 -2.39 -0.02 1.52 16 15 N -0.47 -12.55 6.12 -895.67 -5.48 -18.04 16 16 C 0.00 -0.09 7.58 83.57 0.63 0.54 16 17 C -0.13 -2.10 8.47 30.94 0.26 -1.84 16 18 C -0.01 -0.26 7.21 83.57 0.60 0.34 16 19 C 0.05 2.15 6.06 86.64 0.53 2.67 16 20 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 21 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 22 H -0.04 -2.25 7.96 -2.39 -0.02 -2.27 16 23 H 0.07 2.84 7.69 -2.39 -0.02 2.82 16 24 H 0.03 1.28 7.55 -2.39 -0.02 1.27 16 25 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.34 7.65 -2.39 -0.02 1.32 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.46 7.87 -2.39 -0.02 1.44 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.89 8.03 -2.39 -0.02 2.87 16 34 H 0.03 1.28 7.50 -2.38 -0.02 1.26 16 Total: -1.00 -65.78 271.41 -2.98 -68.75 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.05 Total: 5.30 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.87 Total: -15.52 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -9.92 Total: -105.39 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.78 -2.98 -68.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983406.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.590 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds