Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99927 * 2 1 4 4 H 1.48502 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47538 * 299.99570 * 3 2 1 6 6 H 1.48500 * 109.47206 * 59.99804 * 3 2 1 7 7 C 1.37881 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00064 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46600 * 184.88640 * 9 7 2 11 11 C 1.47901 * 110.99486 * 184.21613 * 10 9 7 12 12 C 1.53997 * 107.05892 * 145.84487 * 11 10 9 13 13 C 1.54600 * 105.22126 * 358.72739 * 12 11 10 14 14 H 1.08998 * 110.72725 * 96.44877 * 13 12 11 15 15 N 1.46904 * 110.72396 * 219.73199 * 13 12 11 16 16 C 1.47477 * 111.00136 * 197.57412 * 15 13 12 17 17 C 1.53517 * 87.93245 * 138.70597 * 16 15 13 18 18 C 1.47481 * 111.00077 * 293.54880 * 15 13 12 19 19 C 1.48526 * 111.00337 * 301.61176 * 10 9 7 20 20 H 0.96998 * 120.00397 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47197 * 64.88695 * 9 7 2 22 22 H 1.08995 * 109.47044 * 304.88300 * 9 7 2 23 23 H 1.09000 * 109.91913 * 26.49351 * 11 10 9 24 24 H 1.09002 * 109.91889 * 265.19688 * 11 10 9 25 25 H 1.09002 * 110.31316 * 117.68789 * 12 11 10 26 26 H 1.08998 * 110.31456 * 239.76498 * 12 11 10 27 27 H 1.08995 * 113.47929 * 253.46620 * 16 15 13 28 28 H 1.08998 * 113.47769 * 23.93914 * 16 15 13 29 29 H 1.09002 * 114.16854 * 220.33378 * 17 16 15 30 30 H 1.08989 * 114.34552 * 87.63223 * 17 16 15 31 31 H 1.08998 * 113.47263 * 336.06048 * 18 15 13 32 32 H 1.09001 * 113.47609 * 106.52479 * 18 15 13 33 33 H 1.08999 * 110.67092 * 318.72303 * 19 10 9 34 34 H 1.09002 * 110.66551 * 81.84657 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6132 0.1191 11 6 1.5064 -4.9151 0.0215 12 6 2.4651 -5.8865 -0.6917 13 6 3.7230 -5.0490 -1.0179 14 1 4.4885 -5.1895 -0.2547 15 7 4.2444 -5.3905 -2.3481 16 6 5.6374 -4.9319 -2.5036 17 6 5.9372 -6.2608 -3.2114 18 6 4.7555 -6.7737 -2.3764 19 6 3.1848 -3.5947 -0.9937 20 1 -0.4850 0.8400 -0.0004 21 1 0.6919 -2.5960 -0.9302 22 1 0.5600 -2.5197 0.8433 23 1 0.5904 -4.8046 -0.5589 24 1 1.2743 -5.2880 1.0191 25 1 2.7231 -6.7156 -0.0327 26 1 2.0113 -6.2606 -1.6094 27 1 5.7383 -4.0621 -3.1525 28 1 6.1645 -4.8157 -1.5567 29 1 6.8974 -6.7021 -2.9440 30 1 5.7530 -6.2493 -4.2855 31 1 5.0472 -7.1489 -1.3955 32 1 4.1089 -7.4645 -2.9175 33 1 2.6947 -3.3514 -1.9364 34 1 3.9894 -2.8898 -0.7842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260983407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = 42.550848 kcal Electronic energy + Delta-G solvation = -14153.141466 eV Core-core repulsion = 11893.985162 eV Total energy + Delta-G solvation = -2259.156304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.09069 -37.42207 -33.06774 -31.15520 -29.04722 -26.83321 -25.71003 -25.52842 -22.29627 -20.33646 -19.97288 -19.60627 -16.48898 -16.05711 -15.70909 -15.04363 -14.47068 -13.91618 -13.52203 -13.21237 -12.86317 -12.50502 -12.13783 -11.93887 -11.56274 -11.28965 -11.02076 -10.77203 -10.66043 -10.56467 -10.40705 -10.36254 -10.10926 -9.75963 -9.07900 -8.73960 -8.43990 -7.29600 -6.01545 -4.02710 3.32124 3.39079 3.43969 4.06198 4.44521 4.45187 4.83781 4.96483 5.13270 5.23259 5.34052 5.41691 5.42985 5.51640 5.63702 5.72413 5.77558 5.82813 6.04516 6.12060 6.17176 6.37095 6.38130 6.52722 6.62612 6.74801 7.16633 7.32328 7.39053 7.78133 8.02681 8.22741 8.53626 9.04464 9.61394 11.10008 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040965 B = 0.007635 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.340925 B = 3666.461138 C = 4211.166607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.185 3.815 10 N -0.518 5.518 11 C 0.036 3.964 12 C -0.119 4.119 13 C 0.038 3.962 14 H 0.057 0.943 15 N -0.464 5.464 16 C -0.001 4.001 17 C -0.148 4.148 18 C -0.002 4.002 19 C 0.069 3.931 20 H 0.261 0.739 21 H -0.010 1.010 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.202 -12.131 -4.119 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.059 3.941 10 N -0.243 5.243 11 C -0.093 4.093 12 C -0.157 4.157 13 C -0.071 4.071 14 H 0.075 0.925 15 N -0.187 5.187 16 C -0.130 4.130 17 C -0.186 4.186 18 C -0.131 4.131 19 C -0.060 4.060 20 H 0.070 0.930 21 H 0.008 0.992 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.731 -11.700 -4.033 15.146 hybrid contribution 0.396 0.694 -0.030 0.800 sum 9.127 -11.006 -4.063 14.864 Atomic orbital electron populations 1.69969 1.06068 1.26661 1.51053 1.24995 0.94873 0.99349 0.95377 0.86443 0.80048 0.83432 0.77519 1.19698 1.21067 1.20967 1.21209 0.93426 0.90076 1.50046 0.91957 1.19902 0.90690 0.87660 0.95853 1.64852 1.15921 1.01870 1.41632 1.22777 0.95939 0.91368 0.99239 1.22381 0.95612 0.97704 1.00044 1.23318 0.96671 0.97777 0.89370 0.92496 1.69010 1.16737 1.05298 1.27635 1.23744 0.90324 0.98638 1.00332 1.23118 0.98106 0.96989 1.00364 1.23688 0.96297 0.93564 0.99524 1.22864 0.96320 0.92739 0.94051 0.92966 0.99227 0.94667 0.94346 0.91486 0.92127 0.91266 0.89747 0.91345 0.91041 0.89144 0.91650 0.90143 0.93355 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.73 8.68 -34.44 -0.30 -15.03 16 8 H 0.06 1.78 6.72 -52.49 -0.35 1.43 16 9 C 0.18 5.03 4.60 -4.97 -0.02 5.01 16 10 N -0.52 -11.87 5.35 -231.79 -1.24 -13.11 16 11 C 0.04 0.68 6.70 -2.75 -0.02 0.67 16 12 C -0.12 -1.89 6.04 -25.37 -0.15 -2.04 16 13 C 0.04 0.63 2.35 -65.76 -0.15 0.48 16 14 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 15 N -0.46 -6.83 6.15 -234.27 -1.44 -8.27 16 16 C 0.00 -0.02 7.63 -7.54 -0.06 -0.07 16 17 C -0.15 -1.48 8.47 -26.20 -0.22 -1.71 16 18 C 0.00 -0.02 7.15 -7.54 -0.05 -0.07 16 19 C 0.07 1.43 5.31 -1.82 -0.01 1.42 16 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 21 H -0.01 -0.29 7.97 -51.93 -0.41 -0.70 16 22 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.04 0.76 7.67 -51.93 -0.40 0.36 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.83 7.63 -51.93 -0.40 0.43 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.87 8.14 -51.94 -0.42 0.45 16 31 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 1.10 8.01 -51.93 -0.42 0.68 16 34 H 0.07 1.58 7.28 -51.93 -0.38 1.20 16 LS Contribution 272.20 15.07 4.10 4.10 Total: -1.00 -30.65 272.20 -9.62 -40.28 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.67 Total: -3.64 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.09 Total: -9.84 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -1.94 Total: -47.91 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.65 -9.62 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.827 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds