Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99927 * 2 1 4 4 H 1.48502 * 109.46940 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47538 * 299.99570 * 3 2 1 6 6 H 1.48500 * 109.47206 * 59.99804 * 3 2 1 7 7 C 1.37881 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00064 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46600 * 184.88640 * 9 7 2 11 11 C 1.47901 * 110.99486 * 184.21613 * 10 9 7 12 12 C 1.53997 * 107.05892 * 145.84487 * 11 10 9 13 13 C 1.54600 * 105.22126 * 358.72739 * 12 11 10 14 14 H 1.08998 * 110.72725 * 96.44877 * 13 12 11 15 15 N 1.46904 * 110.72396 * 219.73199 * 13 12 11 16 16 C 1.47477 * 111.00136 * 197.57412 * 15 13 12 17 17 C 1.53517 * 87.93245 * 138.70597 * 16 15 13 18 18 C 1.47481 * 111.00077 * 293.54880 * 15 13 12 19 19 C 1.48526 * 111.00337 * 301.61176 * 10 9 7 20 20 H 0.96998 * 120.00397 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47197 * 64.88695 * 9 7 2 22 22 H 1.08995 * 109.47044 * 304.88300 * 9 7 2 23 23 H 1.09000 * 109.91913 * 26.49351 * 11 10 9 24 24 H 1.09002 * 109.91889 * 265.19688 * 11 10 9 25 25 H 1.09002 * 110.31316 * 117.68789 * 12 11 10 26 26 H 1.08998 * 110.31456 * 239.76498 * 12 11 10 27 27 H 1.08995 * 113.47929 * 253.46620 * 16 15 13 28 28 H 1.08998 * 113.47769 * 23.93914 * 16 15 13 29 29 H 1.09002 * 114.16854 * 220.33378 * 17 16 15 30 30 H 1.08989 * 114.34552 * 87.63223 * 17 16 15 31 31 H 1.08998 * 113.47263 * 336.06048 * 18 15 13 32 32 H 1.09001 * 113.47609 * 106.52479 * 18 15 13 33 33 H 1.08999 * 110.67092 * 318.72303 * 19 10 9 34 34 H 1.09002 * 110.66551 * 81.84657 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2012 -3.6132 0.1191 11 6 1.5064 -4.9151 0.0215 12 6 2.4651 -5.8865 -0.6917 13 6 3.7230 -5.0490 -1.0179 14 1 4.4885 -5.1895 -0.2547 15 7 4.2444 -5.3905 -2.3481 16 6 5.6374 -4.9319 -2.5036 17 6 5.9372 -6.2608 -3.2114 18 6 4.7555 -6.7737 -2.3764 19 6 3.1848 -3.5947 -0.9937 20 1 -0.4850 0.8400 -0.0004 21 1 0.6919 -2.5960 -0.9302 22 1 0.5600 -2.5197 0.8433 23 1 0.5904 -4.8046 -0.5589 24 1 1.2743 -5.2880 1.0191 25 1 2.7231 -6.7156 -0.0327 26 1 2.0113 -6.2606 -1.6094 27 1 5.7383 -4.0621 -3.1525 28 1 6.1645 -4.8157 -1.5567 29 1 6.8974 -6.7021 -2.9440 30 1 5.7530 -6.2493 -4.2855 31 1 5.0472 -7.1489 -1.3955 32 1 4.1089 -7.4645 -2.9175 33 1 2.6947 -3.3514 -1.9364 34 1 3.9894 -2.8898 -0.7842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260983407.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = 19.234266 kcal Electronic energy + Delta-G solvation = -14154.152549 eV Core-core repulsion = 11893.985162 eV Total energy + Delta-G solvation = -2260.167387 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21333 -38.97538 -35.16040 -32.85864 -30.50107 -28.61357 -27.15883 -26.65684 -24.22167 -21.72526 -21.55057 -20.67475 -18.54642 -17.44970 -17.03285 -16.50947 -16.26670 -15.21333 -14.95546 -14.92685 -14.51784 -14.02756 -13.68492 -13.41741 -13.05419 -12.78042 -12.65597 -12.57984 -12.35326 -11.92478 -11.84979 -11.69485 -11.50004 -11.36223 -11.21886 -10.68064 -9.80371 -9.19986 -8.26009 -6.36742 1.37800 1.38843 1.52533 2.37072 2.93236 3.07685 3.45854 3.54188 3.75678 3.77326 4.02652 4.13296 4.33334 4.40237 4.52585 4.65867 4.76800 4.78971 4.82538 4.84371 4.91878 4.97218 5.01607 5.10320 5.15788 5.22145 5.32678 5.42169 5.58115 5.90519 6.14890 6.22222 6.48955 6.78410 7.33176 8.86599 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.040965 B = 0.007635 C = 0.006647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.340925 B = 3666.461138 C = 4211.166607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.201 3.799 10 N -0.528 5.528 11 C 0.030 3.970 12 C -0.107 4.107 13 C 0.054 3.946 14 H 0.067 0.933 15 N -0.491 5.491 16 C -0.010 4.010 17 C -0.130 4.130 18 C 0.000 4.000 19 C 0.071 3.929 20 H 0.266 0.734 21 H -0.041 1.041 22 H 0.007 0.993 23 H 0.023 0.977 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.156 -13.145 -4.261 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.080 0.920 9 C 0.074 3.926 10 N -0.252 5.252 11 C -0.099 4.099 12 C -0.145 4.145 13 C -0.056 4.056 14 H 0.085 0.915 15 N -0.214 5.214 16 C -0.139 4.139 17 C -0.167 4.167 18 C -0.129 4.129 19 C -0.058 4.058 20 H 0.075 0.925 21 H -0.024 1.024 22 H 0.025 0.975 23 H 0.042 0.958 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.696 -12.742 -4.179 17.153 hybrid contribution -0.238 0.973 0.000 1.001 sum 10.459 -11.770 -4.179 16.290 Atomic orbital electron populations 1.70095 1.07817 1.28026 1.51504 1.25981 0.95829 1.03439 0.94503 0.85277 0.78866 0.78200 0.77945 1.18719 1.20194 1.19993 1.21495 0.93545 0.91173 1.50540 0.92000 1.19534 0.90734 0.89391 0.92958 1.64736 1.15567 1.02256 1.42666 1.22909 0.96109 0.90397 1.00437 1.22326 0.94228 0.97431 1.00494 1.23114 0.97105 0.94308 0.91089 0.91539 1.69007 1.18362 1.07927 1.26091 1.23864 0.89304 0.99853 1.00901 1.23060 0.98788 0.94690 1.00196 1.23788 0.96719 0.91743 1.00602 1.22783 0.95153 0.96042 0.91825 0.92517 1.02388 0.97475 0.95820 0.90067 0.88842 0.90769 0.90691 0.90836 0.88551 0.88776 0.90394 0.89377 0.96139 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.53 -31.53 8.68 25.60 0.22 -31.31 16 8 H 0.06 3.61 6.72 -2.91 -0.02 3.59 16 9 C 0.20 11.47 4.60 85.56 0.39 11.87 16 10 N -0.53 -24.78 5.35 -887.24 -4.74 -29.53 16 11 C 0.03 1.15 6.70 86.45 0.58 1.73 16 12 C -0.11 -3.17 6.04 31.48 0.19 -2.98 16 13 C 0.05 1.69 2.35 46.18 0.11 1.80 16 14 H 0.07 1.99 7.65 -2.39 -0.02 1.97 16 15 N -0.49 -13.58 6.15 -895.09 -5.50 -19.08 16 16 C -0.01 -0.24 7.63 83.58 0.64 0.40 16 17 C -0.13 -2.18 8.47 30.94 0.26 -1.91 16 18 C 0.00 0.00 7.15 83.58 0.60 0.60 16 19 C 0.07 2.99 5.31 86.71 0.46 3.46 16 20 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 21 H -0.04 -2.57 7.97 -2.39 -0.02 -2.59 16 22 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.02 0.96 7.67 -2.39 -0.02 0.94 16 24 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.62 7.63 -2.39 -0.02 1.60 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.36 7.90 -2.39 -0.02 1.34 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.02 0.97 8.01 -2.39 -0.02 0.95 16 34 H 0.06 2.65 7.28 -2.39 -0.02 2.63 16 Total: -1.00 -67.63 272.20 -2.97 -70.60 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.05 Total: 4.11 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 3.91 Total: -15.86 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -9.96 Total: -106.39 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -67.63 -2.97 -70.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260983407.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.838 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds