Wall clock time and date at job start Mon Mar 30 2020 02:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48498 * 109.47176 * 267.49783 * 3 2 1 5 5 H 1.48504 * 109.46808 * 27.49526 * 3 2 1 6 6 H 1.48492 * 109.47472 * 147.49344 * 3 2 1 7 7 C 1.37874 * 120.00103 * 179.72368 * 2 1 3 8 8 H 1.08007 * 119.99986 * 10.77920 * 7 2 1 9 9 C 1.50697 * 120.00336 * 190.77717 * 7 2 1 10 10 C 1.53001 * 110.52111 * 297.80622 * 9 7 2 11 11 N 1.46896 * 109.47094 * 295.31523 * 10 9 7 12 12 C 1.54353 * 110.57991 * 60.75480 * 9 7 2 13 13 C 1.53602 * 104.45588 * 90.81304 * 12 9 7 14 14 H 1.08998 * 111.21685 * 257.22751 * 13 12 9 15 15 C 1.54179 * 109.54210 * 134.87775 * 13 12 9 16 16 C 1.55170 * 102.87439 * 219.89393 * 15 13 12 17 17 C 1.54851 * 101.66151 * 36.03864 * 16 15 13 18 18 N 1.47591 * 107.77876 * 18.42653 * 13 12 9 19 19 C 1.47330 * 108.95665 * 358.86169 * 18 13 12 20 20 H 0.97001 * 120.00051 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.46649 * 55.32013 * 10 9 7 22 22 H 1.08997 * 109.47177 * 175.31345 * 10 9 7 23 23 H 1.00904 * 110.99511 * 64.64545 * 11 10 9 24 24 H 1.00900 * 110.99600 * 188.59271 * 11 10 9 25 25 H 1.09003 * 110.43915 * 209.55763 * 12 9 7 26 26 H 1.09001 * 110.44066 * 332.07118 * 12 9 7 27 27 H 1.08999 * 110.73267 * 338.23820 * 15 13 12 28 28 H 1.08997 * 110.73284 * 101.36967 * 15 13 12 29 29 H 1.09003 * 110.98800 * 154.13136 * 16 15 13 30 30 H 1.09005 * 110.98935 * 277.93929 * 16 15 13 31 31 H 1.09003 * 110.33457 * 204.43207 * 17 16 15 32 32 H 1.09003 * 110.33828 * 82.19124 * 17 16 15 33 33 H 1.08998 * 110.00325 * 223.83886 * 19 18 13 34 34 H 1.08997 * 110.00364 * 102.47883 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5496 2.0158 -1.3987 5 1 1.4211 2.6673 0.6464 6 1 3.5192 1.4561 0.7523 7 6 2.0045 -1.1940 0.0058 8 1 1.4788 -2.1219 -0.1647 9 6 3.4916 -1.2044 0.2498 10 6 4.2210 -0.4298 -0.8497 11 7 4.0391 -1.1165 -2.1354 12 6 3.8174 -0.6169 1.6395 13 6 3.8111 -1.8311 2.5802 14 1 2.8919 -1.8728 3.1644 15 6 5.0382 -1.7683 3.5116 16 6 5.4978 -3.2488 3.5783 17 6 5.2015 -3.7338 2.1379 18 7 3.9506 -3.0442 1.7512 19 6 4.0166 -2.6499 0.3332 20 1 -0.4850 0.8401 -0.0004 21 1 3.8129 0.5788 -0.9154 22 1 5.2837 -0.3770 -0.6131 23 1 3.0693 -1.1117 -2.4139 24 1 4.6224 -0.7070 -2.8497 25 1 4.8004 -0.1458 1.6326 26 1 3.0528 0.1001 1.9385 27 1 5.8184 -1.1412 3.0802 28 1 4.7548 -1.4045 4.4992 29 1 6.5624 -3.3175 3.8022 30 1 4.9104 -3.8076 4.3070 31 1 5.0583 -4.8143 2.1238 32 1 6.0132 -3.4497 1.4680 33 1 3.3896 -3.3094 -0.2668 34 1 5.0474 -2.6931 -0.0183 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:06 Heat of formation + Delta-G solvation = 15.292817 kcal Electronic energy + Delta-G solvation = -15039.028608 eV Core-core repulsion = 12778.690307 eV Total energy + Delta-G solvation = -2260.338301 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51086 -35.66587 -32.20230 -31.76466 -30.62285 -27.95757 -24.95596 -24.45829 -23.10339 -20.89689 -19.46955 -18.53900 -16.22016 -15.87174 -15.13753 -14.91082 -14.51901 -13.64763 -13.52266 -12.97002 -12.64158 -12.59276 -11.98915 -11.61673 -11.52400 -11.15597 -10.92116 -10.78376 -10.52755 -10.20187 -10.15460 -9.94938 -9.74647 -9.17685 -8.89850 -8.50814 -7.76640 -7.55697 -6.08328 -4.02888 3.19732 3.32152 3.35554 4.37142 4.73452 5.01467 5.12274 5.23169 5.36942 5.45975 5.73188 5.85250 5.93461 6.00596 6.03281 6.13051 6.18696 6.24744 6.29387 6.37254 6.49130 6.52145 6.67521 6.89564 7.00377 7.08981 7.33977 7.75795 7.79113 7.90146 7.99666 8.28235 8.59708 9.02482 9.55248 11.04755 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.035981 B = 0.012930 C = 0.011813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.991307 B = 2164.974704 C = 2369.748968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.253 1.253 7 C -0.485 4.485 8 H 0.078 0.922 9 C 0.038 3.962 10 C 0.073 3.927 11 N -0.840 5.840 12 C -0.128 4.128 13 C 0.076 3.924 14 H 0.085 0.915 15 C -0.141 4.141 16 C -0.130 4.130 17 C 0.034 3.966 18 N -0.510 5.510 19 C 0.076 3.924 20 H 0.262 0.738 21 H 0.011 0.989 22 H 0.043 0.957 23 H 0.352 0.648 24 H 0.319 0.681 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -1.785 3.279 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.219 1.219 5 H -0.229 1.229 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.096 0.904 9 C 0.036 3.964 10 C -0.058 4.058 11 N -0.369 5.369 12 C -0.168 4.168 13 C -0.032 4.032 14 H 0.103 0.897 15 C -0.180 4.180 16 C -0.168 4.168 17 C -0.094 4.094 18 N -0.233 5.233 19 C -0.051 4.051 20 H 0.072 0.928 21 H 0.029 0.971 22 H 0.061 0.939 23 H 0.166 0.834 24 H 0.129 0.871 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.241 -2.698 3.743 11.232 hybrid contribution 0.718 2.616 -0.542 2.766 sum 10.959 -0.082 3.201 11.417 Atomic orbital electron populations 1.69936 1.06162 1.26657 1.50509 1.25015 0.94548 0.98636 0.95053 0.87355 0.80371 0.84177 0.77618 1.21871 1.22932 1.17821 1.20824 0.89061 0.94635 1.47748 0.90406 1.19390 0.96559 0.91161 0.89251 1.22140 0.97364 0.94542 0.91765 1.58679 1.13691 1.60212 1.04285 1.23106 0.99206 0.96884 0.97568 1.22691 0.97020 0.89592 0.93934 0.89690 1.23020 0.98377 0.96355 1.00210 1.22725 1.00238 0.96330 0.97548 1.23275 0.91655 0.99508 0.94985 1.64967 1.31989 1.21838 1.04529 1.22723 0.97972 0.97149 0.87261 0.92828 0.97111 0.93875 0.83375 0.87095 0.94165 0.91368 0.91899 0.91540 0.91808 0.91126 0.91126 0.94043 0.90722 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 2 C 0.07 1.91 5.24 -17.82 -0.09 1.82 16 3 Si 0.87 21.25 22.78 -169.99 -3.87 17.38 16 4 H -0.29 -7.05 7.05 56.52 0.40 -6.65 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.25 -5.74 4.85 56.52 0.27 -5.47 16 7 C -0.48 -13.05 7.87 -34.44 -0.27 -13.32 16 8 H 0.08 2.36 7.84 -52.48 -0.41 1.95 16 9 C 0.04 0.87 0.36 -154.42 -0.06 0.81 16 10 C 0.07 1.54 5.01 -3.83 -0.02 1.52 16 11 N -0.84 -16.16 9.13 -10.37 -0.09 -16.25 16 12 C -0.13 -2.76 3.77 -25.71 -0.10 -2.85 16 13 C 0.08 1.49 4.06 -66.40 -0.27 1.22 16 14 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 15 C -0.14 -2.20 6.47 -24.97 -0.16 -2.36 16 16 C -0.13 -1.82 7.07 -24.61 -0.17 -2.00 16 17 C 0.03 0.55 6.72 -2.26 -0.02 0.53 16 18 N -0.51 -10.18 5.68 -221.86 -1.26 -11.44 16 19 C 0.08 1.62 5.45 -3.06 -0.02 1.60 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.01 0.25 2.98 -51.93 -0.15 0.10 16 22 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 23 H 0.35 7.27 8.36 -39.29 -0.33 6.94 16 24 H 0.32 5.16 9.08 -39.29 -0.36 4.80 16 25 H 0.04 0.80 6.91 -51.93 -0.36 0.44 16 26 H 0.07 1.58 5.29 -51.93 -0.27 1.30 16 27 H 0.06 0.96 7.29 -51.93 -0.38 0.58 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.66 7.08 -51.93 -0.37 0.29 16 33 H 0.07 1.71 7.75 -51.93 -0.40 1.31 16 34 H 0.03 0.60 6.75 -51.93 -0.35 0.25 16 LS Contribution 248.98 15.07 3.75 3.75 Total: -1.00 -29.00 248.98 -7.06 -36.05 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.18 Total: 9.61 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.17 Total: -13.03 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.58 Total: -53.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -3.87 Total: 17.38 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.00 -7.06 -36.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.347 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds