Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48497 * 109.46822 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.46935 * 29.99799 * 3 2 1 6 6 H 1.48496 * 109.47374 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00008 * 186.48437 * 7 2 1 9 9 C 1.50697 * 119.99962 * 6.76862 * 7 2 1 10 10 C 1.52998 * 110.19267 * 62.80871 * 9 7 2 11 11 N 1.46895 * 109.47231 * 55.38653 * 10 9 7 12 12 C 1.54136 * 110.21990 * 300.85968 * 9 7 2 13 13 C 1.54066 * 104.24887 * 223.41885 * 12 9 7 14 14 H 1.08999 * 112.64831 * 268.47357 * 13 12 9 15 15 C 1.53931 * 109.38703 * 143.37002 * 13 12 9 16 16 C 1.54022 * 104.57293 * 276.20966 * 15 13 12 17 17 C 1.53643 * 105.67533 * 342.96380 * 16 15 13 18 18 N 1.47340 * 107.84101 * 359.40270 * 17 16 15 19 19 C 1.47492 * 110.08358 * 135.17743 * 18 17 16 20 20 H 0.96997 * 120.00039 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47203 * 175.38329 * 10 9 7 22 22 H 1.08999 * 109.47355 * 295.37896 * 10 9 7 23 23 H 1.00901 * 111.00235 * 56.04202 * 11 10 9 24 24 H 1.00901 * 111.00538 * 180.02562 * 11 10 9 25 25 H 1.09000 * 110.47157 * 342.10791 * 12 9 7 26 26 H 1.08999 * 110.47668 * 104.72719 * 12 9 7 27 27 H 1.08996 * 110.41299 * 34.98457 * 15 13 12 28 28 H 1.09000 * 110.41358 * 157.43522 * 15 13 12 29 29 H 1.08997 * 110.20779 * 102.01773 * 16 15 13 30 30 H 1.09004 * 110.20622 * 223.91147 * 16 15 13 31 31 H 1.08997 * 109.79020 * 239.81619 * 17 16 15 32 32 H 1.09003 * 109.78961 * 118.99545 * 17 16 15 33 33 H 1.09002 * 109.83071 * 145.35265 * 19 18 17 34 34 H 1.08993 * 109.83840 * 24.36176 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0794 -1.1969 0.1062 9 6 1.2590 -2.4946 -0.1527 10 6 0.5618 -2.5465 -1.5136 11 7 1.5496 -2.3277 -2.5785 12 6 0.2284 -2.6548 0.9822 13 6 0.3767 -4.1231 1.4247 14 1 -0.2991 -4.7923 0.8921 15 6 0.1942 -4.2180 2.9502 16 6 1.5810 -3.8791 3.5283 17 6 2.5672 -4.0363 2.3607 18 7 1.7999 -4.4573 1.1753 19 6 2.2251 -3.6816 -0.0049 20 1 -0.4850 0.8400 -0.0004 21 1 0.0952 -3.5227 -1.6459 22 1 -0.2015 -1.7698 -1.5607 23 1 2.3024 -2.9967 -2.5165 24 1 1.1135 -2.3569 -3.4880 25 1 0.4626 -1.9824 1.8075 26 1 -0.7794 -2.4683 0.6113 27 1 -0.5467 -3.4945 3.2901 28 1 -0.1004 -5.2279 3.2357 29 1 1.5947 -2.8536 3.8973 30 1 1.8340 -4.5721 4.3307 31 1 3.3120 -4.7933 2.6060 32 1 3.0594 -3.0841 2.1626 33 1 2.1796 -4.3085 -0.8955 34 1 3.2414 -3.3153 0.1396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = 1.999273 kcal Electronic energy + Delta-G solvation = -15092.102118 eV Core-core repulsion = 12831.187366 eV Total energy + Delta-G solvation = -2260.914752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.49683 -35.20444 -31.98384 -31.49728 -30.10289 -27.75842 -24.94955 -24.34142 -22.85455 -20.33073 -19.16643 -18.71514 -16.06710 -15.41347 -14.81449 -14.46904 -14.34143 -13.48742 -13.11599 -12.75714 -12.56793 -12.13243 -11.74463 -11.23319 -11.09205 -10.92696 -10.76131 -10.73000 -10.47936 -10.29429 -10.03883 -9.86222 -9.35406 -9.27873 -8.78489 -8.23131 -7.54966 -7.40626 -5.89598 -3.88607 3.38955 3.44818 3.47781 4.54211 4.91178 5.24648 5.30914 5.45448 5.55795 5.74633 5.93051 6.11225 6.19624 6.25385 6.34175 6.36874 6.47511 6.50997 6.55213 6.72419 6.75002 6.84060 6.92866 7.27129 7.33171 7.62840 7.73314 7.80309 7.90399 8.06422 8.30966 8.52072 8.61110 9.05119 9.73056 11.18441 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.013373 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.460979 B = 2093.253272 C = 2436.353413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.475 4.475 8 H 0.049 0.951 9 C 0.054 3.946 10 C 0.086 3.914 11 N -0.828 5.828 12 C -0.097 4.097 13 C 0.046 3.954 14 H 0.079 0.921 15 C -0.118 4.118 16 C -0.127 4.127 17 C 0.038 3.962 18 N -0.513 5.513 19 C 0.043 3.957 20 H 0.255 0.745 21 H -0.020 1.020 22 H 0.085 0.915 23 H 0.322 0.678 24 H 0.315 0.685 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.738 -6.586 2.581 7.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.053 3.947 10 C -0.045 4.045 11 N -0.355 5.355 12 C -0.136 4.136 13 C -0.063 4.063 14 H 0.097 0.903 15 C -0.156 4.156 16 C -0.165 4.165 17 C -0.090 4.090 18 N -0.236 5.236 19 C -0.085 4.085 20 H 0.065 0.935 21 H -0.002 1.002 22 H 0.103 0.897 23 H 0.133 0.867 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.805 -6.334 2.839 6.988 hybrid contribution 0.067 0.938 -0.290 0.984 sum 0.871 -5.397 2.548 6.031 Atomic orbital electron populations 1.69928 1.05732 1.25941 1.51403 1.24785 0.94683 0.98524 0.94993 0.86690 0.79721 0.84077 0.77921 1.20802 1.21868 1.20400 1.20805 0.92436 0.89654 1.48384 0.93237 1.19132 0.91687 0.93204 0.90725 1.21857 0.94329 0.95848 0.92464 1.58599 1.13774 1.58482 1.04643 1.22600 1.00093 0.91470 0.99480 1.23379 0.90457 0.98076 0.94344 0.90322 1.22254 0.97014 1.00495 0.95816 1.22226 0.95313 1.01155 0.97846 1.22691 0.96440 0.99420 0.90481 1.65613 1.02827 1.51578 1.03552 1.23133 0.99734 0.93744 0.91885 0.93474 1.00237 0.89659 0.86684 0.87509 0.91711 0.92452 0.91452 0.92494 0.91699 0.92300 0.92090 0.92519 0.93317 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 10.74 55.43 0.60 -24.00 16 2 C 0.07 1.92 5.13 -17.82 -0.09 1.83 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.47 -12.52 7.33 -34.44 -0.25 -12.77 16 8 H 0.05 1.35 7.35 -52.49 -0.39 0.96 16 9 C 0.05 1.27 0.47 -154.68 -0.07 1.20 16 10 C 0.09 1.97 5.17 -3.83 -0.02 1.95 16 11 N -0.83 -17.29 9.10 -10.37 -0.09 -17.38 16 12 C -0.10 -2.20 3.87 -25.58 -0.10 -2.30 16 13 C 0.05 0.89 4.17 -65.90 -0.27 0.61 16 14 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 15 C -0.12 -1.97 6.28 -25.71 -0.16 -2.13 16 16 C -0.13 -2.08 6.64 -25.86 -0.17 -2.25 16 17 C 0.04 0.70 6.42 -3.25 -0.02 0.67 16 18 N -0.51 -10.12 5.83 -222.52 -1.30 -11.42 16 19 C 0.04 0.91 5.37 -3.11 -0.02 0.90 16 20 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 21 H -0.02 -0.44 8.14 -51.93 -0.42 -0.87 16 22 H 0.09 2.21 6.75 -51.93 -0.35 1.86 16 23 H 0.32 6.20 7.70 -39.29 -0.30 5.90 16 24 H 0.31 5.74 9.08 -39.29 -0.36 5.39 16 25 H 0.06 1.62 7.25 -51.93 -0.38 1.24 16 26 H 0.06 1.38 7.71 -51.93 -0.40 0.98 16 27 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.14 7.28 -51.93 -0.38 0.76 16 33 H 0.05 0.99 6.94 -51.93 -0.36 0.63 16 34 H 0.06 1.29 6.60 -51.93 -0.34 0.95 16 LS Contribution 259.15 15.07 3.91 3.91 Total: -1.00 -27.60 259.15 -8.43 -36.03 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.34 Total: 8.49 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.18 Total: -12.30 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.80 Total: -52.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.60 -8.43 -36.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.030 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds