Wall clock time and date at job start Mon Mar 30 2020 02:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00027 * 2 1 4 4 H 1.48497 * 109.46822 * 269.99887 * 3 2 1 5 5 H 1.48500 * 109.46935 * 29.99799 * 3 2 1 6 6 H 1.48496 * 109.47374 * 149.99832 * 3 2 1 7 7 C 1.37877 * 120.00180 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00008 * 186.48437 * 7 2 1 9 9 C 1.50697 * 119.99962 * 6.76862 * 7 2 1 10 10 C 1.52998 * 110.19267 * 62.80871 * 9 7 2 11 11 N 1.46895 * 109.47231 * 55.38653 * 10 9 7 12 12 C 1.54136 * 110.21990 * 300.85968 * 9 7 2 13 13 C 1.54066 * 104.24887 * 223.41885 * 12 9 7 14 14 H 1.08999 * 112.64831 * 268.47357 * 13 12 9 15 15 C 1.53931 * 109.38703 * 143.37002 * 13 12 9 16 16 C 1.54022 * 104.57293 * 276.20966 * 15 13 12 17 17 C 1.53643 * 105.67533 * 342.96380 * 16 15 13 18 18 N 1.47340 * 107.84101 * 359.40270 * 17 16 15 19 19 C 1.47492 * 110.08358 * 135.17743 * 18 17 16 20 20 H 0.96997 * 120.00039 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47203 * 175.38329 * 10 9 7 22 22 H 1.08999 * 109.47355 * 295.37896 * 10 9 7 23 23 H 1.00901 * 111.00235 * 56.04202 * 11 10 9 24 24 H 1.00901 * 111.00538 * 180.02562 * 11 10 9 25 25 H 1.09000 * 110.47157 * 342.10791 * 12 9 7 26 26 H 1.08999 * 110.47668 * 104.72719 * 12 9 7 27 27 H 1.08996 * 110.41299 * 34.98457 * 15 13 12 28 28 H 1.09000 * 110.41358 * 157.43522 * 15 13 12 29 29 H 1.08997 * 110.20779 * 102.01773 * 16 15 13 30 30 H 1.09004 * 110.20622 * 223.91147 * 16 15 13 31 31 H 1.08997 * 109.79020 * 239.81619 * 17 16 15 32 32 H 1.09003 * 109.78961 * 118.99545 * 17 16 15 33 33 H 1.09002 * 109.83071 * 145.35265 * 19 18 17 34 34 H 1.08993 * 109.83840 * 24.36176 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0794 -1.1969 0.1062 9 6 1.2590 -2.4946 -0.1527 10 6 0.5618 -2.5465 -1.5136 11 7 1.5496 -2.3277 -2.5785 12 6 0.2284 -2.6548 0.9822 13 6 0.3767 -4.1231 1.4247 14 1 -0.2991 -4.7923 0.8921 15 6 0.1942 -4.2180 2.9502 16 6 1.5810 -3.8791 3.5283 17 6 2.5672 -4.0363 2.3607 18 7 1.7999 -4.4573 1.1753 19 6 2.2251 -3.6816 -0.0049 20 1 -0.4850 0.8400 -0.0004 21 1 0.0952 -3.5227 -1.6459 22 1 -0.2015 -1.7698 -1.5607 23 1 2.3024 -2.9967 -2.5165 24 1 1.1135 -2.3569 -3.4880 25 1 0.4626 -1.9824 1.8075 26 1 -0.7794 -2.4683 0.6113 27 1 -0.5467 -3.4945 3.2901 28 1 -0.1004 -5.2279 3.2357 29 1 1.5947 -2.8536 3.8973 30 1 1.8340 -4.5721 4.3307 31 1 3.3120 -4.7933 2.6060 32 1 3.0594 -3.0841 2.1626 33 1 2.1796 -4.3085 -0.8955 34 1 3.2414 -3.3153 0.1396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986287.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:09 Heat of formation + Delta-G solvation = -18.107781 kcal Electronic energy + Delta-G solvation = -15092.974025 eV Core-core repulsion = 12831.187366 eV Total energy + Delta-G solvation = -2261.786659 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11667 -36.92596 -33.96852 -33.07249 -31.74336 -29.46617 -26.60706 -26.26094 -24.62359 -21.74774 -20.74578 -20.58673 -17.99528 -16.96646 -16.57142 -16.41254 -15.88075 -15.31389 -14.76127 -14.39304 -14.14539 -13.90516 -13.43630 -13.05290 -12.85808 -12.71513 -12.53568 -12.32353 -12.14777 -12.05006 -11.70276 -11.45768 -11.16455 -10.98202 -10.73102 -10.27013 -9.18775 -9.12135 -7.96916 -5.99705 1.40808 1.44987 1.49732 2.51057 3.33899 3.36670 3.83160 3.88669 4.10605 4.21817 4.39503 4.56755 4.58377 4.68360 4.75447 4.82511 4.93679 4.99526 5.06119 5.10215 5.13780 5.25687 5.40483 5.48921 5.53524 5.73822 5.83478 6.05896 6.17377 6.24916 6.44589 6.73636 6.95345 7.02947 7.62937 9.08745 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.013373 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.460979 B = 2093.253272 C = 2436.353413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.030 3.970 3 Si 0.933 3.067 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.478 4.478 8 H 0.036 0.964 9 C 0.045 3.955 10 C 0.096 3.904 11 N -0.837 5.837 12 C -0.085 4.085 13 C 0.046 3.954 14 H 0.088 0.912 15 C -0.113 4.113 16 C -0.124 4.124 17 C 0.035 3.965 18 N -0.509 5.509 19 C 0.052 3.948 20 H 0.252 0.748 21 H -0.008 1.008 22 H 0.052 0.948 23 H 0.333 0.667 24 H 0.331 0.669 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -7.947 3.122 8.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.168 4.168 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.035 4.035 11 N -0.366 5.366 12 C -0.125 4.125 13 C -0.062 4.062 14 H 0.106 0.894 15 C -0.151 4.151 16 C -0.162 4.162 17 C -0.094 4.094 18 N -0.231 5.231 19 C -0.076 4.076 20 H 0.061 0.939 21 H 0.010 0.990 22 H 0.070 0.930 23 H 0.146 0.854 24 H 0.143 0.857 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.265 -7.703 3.375 8.505 hybrid contribution -0.050 1.359 -0.481 1.443 sum 1.215 -6.344 2.894 7.078 Atomic orbital electron populations 1.70038 1.06459 1.26011 1.52349 1.25311 0.95313 1.00808 0.95384 0.85951 0.78865 0.81504 0.77471 1.21189 1.21764 1.20117 1.20997 0.91900 0.91165 1.47585 0.94598 1.19202 0.92230 0.92967 0.91287 1.21585 0.93924 0.95202 0.92804 1.58472 1.13891 1.59127 1.05143 1.22360 0.98509 0.93469 0.98164 1.23394 0.90614 0.95571 0.96627 0.89353 1.22245 0.97290 1.02107 0.93468 1.22233 0.94501 1.01499 0.97969 1.22785 0.97140 0.98829 0.90627 1.65674 1.02989 1.50825 1.03647 1.22970 0.98469 0.93088 0.93113 0.93893 0.98995 0.92984 0.85434 0.85734 0.94642 0.94570 0.91604 0.89772 0.92799 0.89048 0.89759 0.95152 0.92248 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.06 10.74 21.45 0.23 -50.83 16 2 C 0.03 1.65 5.13 84.65 0.43 2.09 16 3 Si 0.93 44.86 29.54 68.60 2.03 46.88 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.48 -25.43 7.33 25.60 0.19 -25.24 16 8 H 0.04 1.97 7.35 -2.91 -0.02 1.95 16 9 C 0.04 2.10 0.47 -52.29 -0.02 2.08 16 10 C 0.10 4.38 5.17 86.30 0.45 4.82 16 11 N -0.84 -34.17 9.10 -186.73 -1.70 -35.87 16 12 C -0.08 -3.89 3.87 31.34 0.12 -3.77 16 13 C 0.05 1.72 4.17 45.32 0.19 1.91 16 14 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 15 C -0.11 -3.49 6.28 31.25 0.20 -3.29 16 16 C -0.12 -3.74 6.64 31.16 0.21 -3.53 16 17 C 0.03 1.19 6.42 86.44 0.56 1.74 16 18 N -0.51 -19.05 5.83 -857.91 -5.00 -24.05 16 19 C 0.05 2.14 5.37 86.44 0.46 2.61 16 20 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 21 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 22 H 0.05 2.73 6.75 -2.39 -0.02 2.71 16 23 H 0.33 12.35 7.70 -89.69 -0.69 11.66 16 24 H 0.33 11.66 9.08 -89.69 -0.81 10.85 16 25 H 0.03 1.79 7.25 -2.39 -0.02 1.77 16 26 H 0.04 1.76 7.71 -2.39 -0.02 1.74 16 27 H 0.07 2.06 7.96 -2.39 -0.02 2.04 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.03 1.19 7.28 -2.39 -0.02 1.18 16 33 H 0.06 2.30 6.94 -2.39 -0.02 2.28 16 34 H 0.05 2.12 6.60 -2.39 -0.02 2.11 16 Total: -1.00 -58.25 259.15 -2.08 -60.34 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.41 Total: 24.12 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 2.78 Total: -20.59 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -6.47 Total: -110.75 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -58.25 -2.08 -60.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986287.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.228 kcal (2) G-P(sol) polarization free energy of solvation -58.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds