Wall clock time and date at job start Mon Mar 30 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48502 * 109.46754 * 265.63646 * 3 2 1 5 5 H 1.48497 * 109.47066 * 25.63949 * 3 2 1 6 6 H 1.48500 * 109.47172 * 145.63979 * 3 2 1 7 7 C 1.37877 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99999 * 358.77961 * 7 2 1 9 9 C 1.50697 * 120.00168 * 178.77598 * 7 2 1 10 10 H 1.09001 * 109.46794 * 335.18274 * 9 7 2 11 11 C 1.53004 * 109.47398 * 215.18345 * 9 7 2 12 12 N 1.46893 * 109.46823 * 294.07419 * 11 9 7 13 13 C 1.52996 * 109.46958 * 95.17890 * 9 7 2 14 14 N 1.46906 * 109.46937 * 186.83928 * 13 9 7 15 15 C 1.48557 * 111.00304 * 274.34903 * 14 13 9 16 16 C 1.54378 * 104.59367 * 200.96137 * 15 14 13 17 17 H 1.09005 * 118.15494 * 244.14891 * 16 15 14 18 18 C 1.52994 * 118.12881 * 87.23318 * 16 15 14 19 19 C 1.52997 * 60.54440 * 268.33017 * 18 16 15 20 20 H 1.09003 * 120.23263 * 248.54081 * 19 18 16 21 21 C 1.48567 * 110.99771 * 158.93082 * 14 13 9 22 22 H 0.96997 * 119.99904 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46638 * 54.06917 * 11 9 7 24 24 H 1.08997 * 109.47163 * 174.07233 * 11 9 7 25 25 H 1.00899 * 111.00409 * 174.23964 * 12 11 9 26 26 H 1.00896 * 111.00151 * 298.19124 * 12 11 9 27 27 H 1.08998 * 109.47713 * 306.84185 * 13 9 7 28 28 H 1.09008 * 109.46829 * 66.84655 * 13 9 7 29 29 H 1.09000 * 110.41561 * 319.74033 * 15 14 13 30 30 H 1.08998 * 110.41097 * 82.17880 * 15 14 13 31 31 H 1.09001 * 117.44380 * 160.68326 * 18 16 15 32 32 H 1.09003 * 117.44515 * 15.97546 * 18 16 15 33 33 H 1.09000 * 110.41064 * 277.82144 * 21 14 13 34 34 H 1.08998 * 110.40850 * 40.14755 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5889 1.9931 -1.3961 5 1 1.4035 2.6775 0.6058 6 1 3.4976 1.4686 0.7902 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0209 9 6 3.5113 -1.1943 -0.0273 10 1 3.8664 -0.2664 -0.4757 11 6 4.0059 -2.3825 -0.8546 12 7 3.6489 -3.6348 -0.1749 13 6 4.0477 -1.3086 1.4009 14 7 5.5075 -1.1446 1.3902 15 6 6.1865 -2.4371 1.1157 16 6 7.6199 -2.2460 1.6561 17 1 8.4458 -2.2762 0.9454 18 6 7.8824 -2.5578 3.1308 19 6 7.5027 -1.1341 2.7188 20 1 8.2337 -0.3287 2.7902 21 6 6.0084 -0.7469 2.7312 22 1 -0.4850 0.8400 -0.0004 23 1 3.5402 -2.3582 -1.8398 24 1 5.0889 -2.3240 -0.9631 25 1 3.8806 -4.4345 -0.7449 26 1 4.0924 -3.6947 0.7293 27 1 3.5994 -0.5321 2.0207 28 1 3.7951 -2.2883 1.8066 29 1 5.6863 -3.2490 1.6436 30 1 6.2074 -2.6354 0.0441 31 1 8.9152 -2.7355 3.4306 32 1 7.1323 -3.1441 3.6615 33 1 5.8953 0.3276 2.8759 34 1 5.4789 -1.2927 3.5120 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261002159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:46 Heat of formation + Delta-G solvation = 46.211956 kcal Electronic energy + Delta-G solvation = -14552.193097 eV Core-core repulsion = 12293.195551 eV Total energy + Delta-G solvation = -2258.997546 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76429 -36.22678 -33.01007 -32.25455 -29.52150 -28.20308 -25.61553 -23.98778 -22.20041 -20.63262 -20.04461 -18.79014 -16.98263 -16.20677 -15.48453 -14.60509 -14.33162 -13.85408 -13.57867 -13.44484 -12.99354 -12.58504 -12.31569 -11.91559 -11.62083 -11.20312 -11.12947 -11.02548 -10.46105 -10.12005 -9.98559 -9.79635 -9.72643 -9.50500 -8.93942 -8.46926 -7.93735 -7.68708 -5.94069 -3.91597 3.37917 3.46110 3.53444 3.63708 4.38424 4.54089 4.62428 4.77220 5.10283 5.20936 5.28573 5.39299 5.46820 5.65722 5.69217 5.75764 5.89730 6.04265 6.06695 6.18374 6.20217 6.33707 6.43051 6.54916 6.70690 7.07042 7.35141 7.45351 7.63782 7.87753 8.01643 8.17172 8.74313 9.24195 9.70286 11.19150 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037602 B = 0.010316 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.469507 B = 2713.618200 C = 3183.659465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.871 3.129 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.084 0.916 9 C 0.028 3.972 10 H 0.038 0.962 11 C 0.072 3.928 12 N -0.837 5.837 13 C 0.047 3.953 14 N -0.512 5.512 15 C 0.054 3.946 16 C -0.167 4.167 17 H 0.112 0.888 18 C -0.154 4.154 19 C -0.164 4.164 20 H 0.113 0.887 21 C 0.058 3.942 22 H 0.261 0.739 23 H 0.062 0.938 24 H 0.010 0.990 25 H 0.321 0.679 26 H 0.327 0.673 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.074 -3.920 4.305 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.102 0.898 9 C 0.008 3.992 10 H 0.056 0.944 11 C -0.058 4.058 12 N -0.367 5.367 13 C -0.081 4.081 14 N -0.236 5.236 15 C -0.073 4.073 16 C -0.186 4.186 17 H 0.130 0.870 18 C -0.191 4.191 19 C -0.183 4.183 20 H 0.131 0.869 21 C -0.070 4.070 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.132 0.868 26 H 0.142 0.858 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.230 -3.091 3.857 15.064 hybrid contribution 1.200 0.227 0.592 1.357 sum 15.430 -2.864 4.450 16.312 Atomic orbital electron populations 1.69913 1.06268 1.26588 1.51578 1.25133 0.94694 0.98786 0.94910 0.86958 0.80432 0.83979 0.78797 1.20495 1.22054 1.18435 1.21042 0.88413 0.94634 1.49004 0.89761 1.19116 0.96535 0.93563 0.90005 0.94421 1.22020 0.94880 0.90651 0.98215 1.58692 1.67769 1.03688 1.06566 1.22923 0.83393 0.99721 1.02017 1.65745 1.08222 1.24972 1.24674 1.22965 0.91140 0.91779 1.01446 1.23475 0.98776 1.04961 0.91383 0.87006 1.23068 1.02046 0.97453 0.96516 1.23412 0.97860 0.91833 1.05188 0.86947 1.22641 0.91617 1.01192 0.91559 0.92951 0.91996 0.97190 0.86819 0.85839 0.91754 0.94349 0.94160 0.89208 0.88402 0.89224 0.90139 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.87 22.02 26.58 -169.99 -4.52 17.50 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.36 6.81 56.52 0.38 -5.97 16 7 C -0.49 -13.89 8.67 -34.44 -0.30 -14.19 16 8 H 0.08 2.64 7.89 -52.48 -0.41 2.23 16 9 C 0.03 0.65 1.92 -91.77 -0.18 0.47 16 10 H 0.04 0.93 5.55 -51.93 -0.29 0.64 16 11 C 0.07 1.47 5.69 -3.83 -0.02 1.44 16 12 N -0.84 -15.43 9.00 -10.37 -0.09 -15.53 16 13 C 0.05 0.99 4.34 -3.82 -0.02 0.97 16 14 N -0.51 -9.25 5.25 -229.97 -1.21 -10.45 16 15 C 0.05 0.82 4.61 -2.18 -0.01 0.81 16 16 C -0.17 -2.15 7.13 -89.24 -0.64 -2.78 16 17 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.15 -1.70 10.07 -26.74 -0.27 -1.97 16 19 C -0.16 -2.12 7.12 -89.25 -0.64 -2.76 16 20 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 21 C 0.06 0.90 6.17 -2.18 -0.01 0.89 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.01 0.19 5.18 -51.93 -0.27 -0.08 16 25 H 0.32 4.97 9.08 -39.29 -0.36 4.62 16 26 H 0.33 5.66 4.85 -39.29 -0.19 5.47 16 27 H 0.06 1.47 7.48 -51.93 -0.39 1.08 16 28 H 0.04 0.80 5.79 -51.92 -0.30 0.50 16 29 H 0.04 0.60 6.38 -51.93 -0.33 0.27 16 30 H 0.09 1.38 5.36 -51.93 -0.28 1.11 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.64 7.99 -51.93 -0.42 0.22 16 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -30.73 259.71 -8.23 -38.96 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.92 Total: 8.30 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.17 Total: -15.30 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.53 Total: -53.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.52 Total: 17.50 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.73 -8.23 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.169 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds