Wall clock time and date at job start Mon Mar 30 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48502 * 109.46754 * 265.63646 * 3 2 1 5 5 H 1.48497 * 109.47066 * 25.63949 * 3 2 1 6 6 H 1.48500 * 109.47172 * 145.63979 * 3 2 1 7 7 C 1.37877 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99999 * 358.77961 * 7 2 1 9 9 C 1.50697 * 120.00168 * 178.77598 * 7 2 1 10 10 H 1.09001 * 109.46794 * 335.18274 * 9 7 2 11 11 C 1.53004 * 109.47398 * 215.18345 * 9 7 2 12 12 N 1.46893 * 109.46823 * 294.07419 * 11 9 7 13 13 C 1.52996 * 109.46958 * 95.17890 * 9 7 2 14 14 N 1.46906 * 109.46937 * 186.83928 * 13 9 7 15 15 C 1.48557 * 111.00304 * 274.34903 * 14 13 9 16 16 C 1.54378 * 104.59367 * 200.96137 * 15 14 13 17 17 H 1.09005 * 118.15494 * 244.14891 * 16 15 14 18 18 C 1.52994 * 118.12881 * 87.23318 * 16 15 14 19 19 C 1.52997 * 60.54440 * 268.33017 * 18 16 15 20 20 H 1.09003 * 120.23263 * 248.54081 * 19 18 16 21 21 C 1.48567 * 110.99771 * 158.93082 * 14 13 9 22 22 H 0.96997 * 119.99904 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46638 * 54.06917 * 11 9 7 24 24 H 1.08997 * 109.47163 * 174.07233 * 11 9 7 25 25 H 1.00899 * 111.00409 * 174.23964 * 12 11 9 26 26 H 1.00896 * 111.00151 * 298.19124 * 12 11 9 27 27 H 1.08998 * 109.47713 * 306.84185 * 13 9 7 28 28 H 1.09008 * 109.46829 * 66.84655 * 13 9 7 29 29 H 1.09000 * 110.41561 * 319.74033 * 15 14 13 30 30 H 1.08998 * 110.41097 * 82.17880 * 15 14 13 31 31 H 1.09001 * 117.44380 * 160.68326 * 18 16 15 32 32 H 1.09003 * 117.44515 * 15.97546 * 18 16 15 33 33 H 1.09000 * 110.41064 * 277.82144 * 21 14 13 34 34 H 1.08998 * 110.40850 * 40.14755 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5889 1.9931 -1.3961 5 1 1.4035 2.6775 0.6058 6 1 3.4976 1.4686 0.7902 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0209 9 6 3.5113 -1.1943 -0.0273 10 1 3.8664 -0.2664 -0.4757 11 6 4.0059 -2.3825 -0.8546 12 7 3.6489 -3.6348 -0.1749 13 6 4.0477 -1.3086 1.4009 14 7 5.5075 -1.1446 1.3902 15 6 6.1865 -2.4371 1.1157 16 6 7.6199 -2.2460 1.6561 17 1 8.4458 -2.2762 0.9454 18 6 7.8824 -2.5578 3.1308 19 6 7.5027 -1.1341 2.7188 20 1 8.2337 -0.3287 2.7902 21 6 6.0084 -0.7469 2.7312 22 1 -0.4850 0.8400 -0.0004 23 1 3.5402 -2.3582 -1.8398 24 1 5.0889 -2.3240 -0.9631 25 1 3.8806 -4.4345 -0.7449 26 1 4.0924 -3.6947 0.7293 27 1 3.5994 -0.5321 2.0207 28 1 3.7951 -2.2883 1.8066 29 1 5.6863 -3.2490 1.6436 30 1 6.2074 -2.6354 0.0441 31 1 8.9152 -2.7355 3.4306 32 1 7.1323 -3.1441 3.6615 33 1 5.8953 0.3276 2.8759 34 1 5.4789 -1.2927 3.5120 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261002159.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:46 Heat of formation + Delta-G solvation = 22.665542 kcal Electronic energy + Delta-G solvation = -14553.214146 eV Core-core repulsion = 12293.195551 eV Total energy + Delta-G solvation = -2260.018595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.96259 -37.79679 -34.55462 -34.20202 -31.30821 -29.37924 -27.18132 -25.89667 -23.53833 -21.72739 -21.11527 -20.61356 -19.02034 -17.41724 -17.11845 -16.24397 -15.92822 -15.26278 -15.12383 -14.88900 -14.65313 -14.13206 -13.77592 -13.43971 -13.21927 -12.94485 -12.35546 -12.29639 -12.22186 -11.76558 -11.71956 -11.34803 -11.08525 -10.99736 -10.84876 -10.67143 -9.37602 -9.18223 -8.20424 -6.21342 1.35774 1.38310 1.51675 2.40079 2.68296 3.00014 3.26398 3.56295 3.73802 3.93188 4.11654 4.16667 4.29362 4.34702 4.46236 4.52456 4.57167 4.69998 4.82209 4.84997 4.86588 4.98761 5.11554 5.20833 5.27363 5.31333 5.68862 5.75429 5.95595 6.12468 6.39528 6.60529 6.81134 6.93419 7.43580 8.96597 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037602 B = 0.010316 C = 0.008793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.469507 B = 2713.618200 C = 3183.659465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.006 3.994 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.247 1.247 7 C -0.488 4.488 8 H 0.042 0.958 9 C 0.025 3.975 10 H 0.029 0.971 11 C 0.081 3.919 12 N -0.848 5.848 13 C 0.063 3.937 14 N -0.525 5.525 15 C 0.052 3.948 16 C -0.171 4.171 17 H 0.129 0.871 18 C -0.132 4.132 19 C -0.170 4.170 20 H 0.128 0.872 21 C 0.052 3.948 22 H 0.261 0.739 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.341 0.659 26 H 0.335 0.665 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.223 -4.045 4.817 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.190 4.190 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.171 1.171 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.005 3.995 10 H 0.047 0.953 11 C -0.050 4.050 12 N -0.382 5.382 13 C -0.065 4.065 14 N -0.249 5.249 15 C -0.075 4.075 16 C -0.189 4.189 17 H 0.147 0.853 18 C -0.169 4.169 19 C -0.188 4.188 20 H 0.146 0.854 21 C -0.076 4.076 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.154 0.846 26 H 0.150 0.850 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.413 -3.242 4.369 18.243 hybrid contribution 0.213 0.153 0.444 0.516 sum 17.626 -3.089 4.813 18.530 Atomic orbital electron populations 1.70067 1.08125 1.27512 1.53940 1.25937 0.95387 1.02636 0.95038 0.85869 0.79337 0.79299 0.79137 1.19756 1.22054 1.17083 1.21240 0.91052 0.92854 1.47560 0.94003 1.19062 0.93445 0.94761 0.92187 0.95289 1.21796 0.96250 0.90139 0.96793 1.58558 1.68421 1.03855 1.07335 1.22443 0.85854 0.98751 0.99454 1.65625 1.05953 1.26873 1.26490 1.22963 0.92655 0.90395 1.01502 1.23497 0.97578 1.05285 0.92589 0.85297 1.23176 1.03586 0.95394 0.94731 1.23408 0.96048 0.93224 1.06150 0.85391 1.22683 0.93810 1.00945 0.90145 0.92974 0.93494 0.94390 0.84648 0.84953 0.94094 0.94564 0.93969 0.89430 0.85544 0.89406 0.90662 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.40 13.96 21.45 0.30 -61.11 16 2 C 0.01 0.34 5.47 84.65 0.46 0.80 16 3 Si 0.94 46.22 26.58 68.60 1.82 48.05 16 4 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.25 -11.54 6.81 99.48 0.68 -10.86 16 7 C -0.49 -28.25 8.67 25.60 0.22 -28.03 16 8 H 0.04 2.73 7.89 -2.91 -0.02 2.70 16 9 C 0.03 1.18 1.92 -11.54 -0.02 1.16 16 10 H 0.03 1.41 5.55 -2.39 -0.01 1.39 16 11 C 0.08 3.19 5.69 86.31 0.49 3.68 16 12 N -0.85 -30.54 9.00 -186.73 -1.68 -32.22 16 13 C 0.06 2.64 4.34 86.30 0.37 3.01 16 14 N -0.53 -18.01 5.25 -881.49 -4.63 -22.63 16 15 C 0.05 1.44 4.61 86.45 0.40 1.84 16 16 C -0.17 -3.72 7.13 -9.90 -0.07 -3.79 16 17 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 18 C -0.13 -2.36 10.07 30.59 0.31 -2.05 16 19 C -0.17 -3.79 7.12 -9.90 -0.07 -3.86 16 20 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 21 C 0.05 1.52 6.17 86.45 0.53 2.05 16 22 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 23 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.04 1.31 5.18 -2.39 -0.01 1.30 16 25 H 0.34 10.02 9.08 -89.69 -0.81 9.21 16 26 H 0.34 11.17 4.85 -89.70 -0.44 10.73 16 27 H 0.04 1.86 7.48 -2.39 -0.02 1.85 16 28 H 0.04 1.50 5.79 -2.38 -0.01 1.49 16 29 H 0.04 1.16 6.38 -2.39 -0.02 1.14 16 30 H 0.09 2.44 5.36 -2.39 -0.01 2.43 16 31 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.17 7.99 -2.39 -0.02 1.15 16 Total: -1.00 -67.50 259.71 -1.73 -69.23 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -0.17 Total: 23.87 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.63 Total: -25.20 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -6.01 Total: -115.96 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.82 Total: 48.05 kcal Total: -67.50 -1.73 -69.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261002159.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.899 kcal (2) G-P(sol) polarization free energy of solvation -67.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds