Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.49244 * 2 1 4 4 C 1.53242 * 109.49270 * 239.92249 * 2 1 3 5 5 N 1.47075 * 108.52236 * 186.20819 * 4 2 1 6 6 C 1.36939 * 120.88304 * 231.16205 * 5 4 2 7 7 H 1.07995 * 119.99656 * 31.97083 * 6 5 4 8 8 C 1.38813 * 120.00185 * 211.97698 * 6 5 4 9 9 N 1.31615 * 120.00196 * 12.05602 * 8 6 5 10 10 Si 1.86796 * 119.99832 * 192.06504 * 8 6 5 11 11 H 1.48499 * 109.47494 * 89.99607 * 10 8 6 12 12 H 1.48503 * 109.47074 * 209.99766 * 10 8 6 13 13 H 1.48502 * 109.47141 * 329.99302 * 10 8 6 14 14 C 1.47078 * 118.24026 * 51.18783 * 5 4 2 15 15 C 1.53245 * 108.52027 * 308.81559 * 14 5 4 16 16 N 1.46894 * 109.49565 * 120.06018 * 2 1 3 17 17 C 1.46900 * 110.99757 * 307.21036 * 16 2 1 18 18 C 1.53009 * 117.49865 * 243.88275 * 17 16 2 19 19 C 1.53002 * 59.99988 * 252.51120 * 18 17 16 20 20 H 1.09002 * 109.46972 * 308.96395 * 1 2 3 21 21 H 1.09000 * 109.46958 * 188.96840 * 1 2 3 22 22 H 1.08996 * 109.47206 * 68.96713 * 1 2 3 23 23 H 1.09007 * 109.62669 * 305.92181 * 4 2 1 24 24 H 1.09005 * 109.62910 * 66.49582 * 4 2 1 25 25 H 0.96998 * 120.00435 * 180.02562 * 9 8 6 26 26 H 1.09001 * 109.63395 * 189.10443 * 14 5 4 27 27 H 1.09002 * 109.78762 * 68.61483 * 14 5 4 28 28 H 1.08995 * 109.48638 * 293.87014 * 15 14 5 29 29 H 1.08994 * 109.51440 * 173.80190 * 15 14 5 30 30 H 1.08995 * 115.55038 * 29.59208 * 17 16 2 31 31 H 1.09001 * 117.49786 * 0.02562 * 18 17 16 32 32 H 1.09007 * 117.49515 * 145.01899 * 18 17 16 33 33 H 1.08997 * 117.49720 * 252.51160 * 19 18 17 34 34 H 1.09001 * 117.49712 * 107.49301 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7240 -1.2501 5 7 3.5041 -0.8434 -1.1553 6 6 4.3103 -0.4435 -2.1875 7 1 4.0125 0.3822 -2.8166 8 6 5.5103 -1.0997 -2.4253 9 7 5.7661 -2.2422 -1.8240 10 14 6.7621 -0.3610 -3.5985 11 1 7.6833 0.5270 -2.8448 12 1 7.5403 -1.4499 -4.2419 13 1 6.0579 0.4272 -4.6417 14 6 4.0782 -1.4041 0.0773 15 6 3.4867 -0.6534 1.2751 16 7 2.0202 -0.6936 1.1985 17 6 1.4140 -0.1355 2.4146 18 6 2.3456 0.5437 3.4206 19 6 1.7361 -0.8220 3.7436 20 1 -0.3633 0.6462 0.7991 21 1 -0.3633 -1.0151 0.1602 22 1 -0.3633 0.3688 -0.9592 23 1 1.5956 -1.7172 -1.3060 24 1 1.7775 -0.1507 -2.1389 25 1 6.6047 -2.7005 -1.9898 26 1 5.1611 -1.2805 0.0661 27 1 3.8313 -2.4633 0.1507 28 1 3.8236 0.3830 1.2571 29 1 3.8157 -1.1268 2.2001 30 1 0.4144 0.2815 2.2929 31 1 3.4082 0.5768 3.1798 32 1 1.9588 1.4080 3.9607 33 1 0.9484 -0.8562 4.4961 34 1 2.3978 -1.6877 3.7155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103127.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = 59.631190 kcal Electronic energy + Delta-G solvation = -14643.704136 eV Core-core repulsion = 12385.288492 eV Total energy + Delta-G solvation = -2258.415645 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.05086 -35.93634 -33.51211 -31.30541 -30.60697 -26.83422 -25.77160 -23.34017 -22.12027 -21.33301 -20.34581 -18.57077 -16.66829 -16.07936 -15.12219 -14.66020 -14.20172 -13.62377 -13.45801 -13.04039 -12.71319 -12.23644 -11.85138 -11.53756 -11.30066 -11.15382 -11.04104 -10.75213 -10.51401 -10.40275 -10.21614 -10.09481 -9.92837 -9.69573 -9.50330 -8.48658 -7.58125 -6.56442 -5.76336 -3.23986 3.38189 3.44652 3.46171 4.01673 4.44906 4.50664 5.14042 5.15598 5.31146 5.41058 5.42424 5.57044 5.70766 5.83482 5.87003 5.95923 6.09833 6.21474 6.25313 6.32163 6.35762 6.42000 6.49091 6.62154 6.75826 6.99780 7.28580 7.66172 7.71033 7.78128 7.84935 8.48721 9.23984 9.85352 10.47142 11.32268 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045356 B = 0.009112 C = 0.008243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.194273 B = 3072.123068 C = 3395.808182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 H 0.036 0.964 4 C 0.155 3.845 5 N -0.595 5.595 6 C -0.255 4.255 7 H 0.064 0.936 8 C 0.005 3.995 9 N -0.903 5.903 10 Si 0.904 3.096 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.180 3.820 15 C 0.033 3.967 16 N -0.496 5.496 17 C 0.021 3.979 18 C -0.225 4.225 19 C -0.176 4.176 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.055 0.945 25 H 0.254 0.746 26 H 0.083 0.917 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 4.210 7.515 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.042 4.042 3 H 0.054 0.946 4 C 0.028 3.972 5 N -0.318 5.318 6 C -0.385 4.385 7 H 0.081 0.919 8 C -0.194 4.194 9 N -0.547 5.547 10 Si 0.734 3.266 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.054 3.946 15 C -0.096 4.096 16 N -0.219 5.219 17 C -0.089 4.089 18 C -0.264 4.264 19 C -0.214 4.214 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.635 3.597 7.387 11.216 hybrid contribution 0.992 1.149 -0.366 1.562 sum -6.643 4.746 7.021 10.768 Atomic orbital electron populations 1.21887 0.95443 1.01940 1.00872 1.22197 0.93910 0.96087 0.92007 0.94597 1.21034 0.86006 0.97001 0.93125 1.44060 0.99459 1.73885 1.14362 1.19167 1.00925 1.10146 1.08258 0.91878 1.25186 1.00213 0.95199 0.98772 1.69992 1.24353 1.14623 1.45711 0.86269 0.81485 0.78140 0.80718 1.21466 1.21651 1.20401 1.20821 0.97920 0.94022 0.81823 1.23002 0.86273 0.99424 1.00896 1.61887 1.07469 1.52637 0.99898 1.22839 0.98311 1.00530 0.87208 1.23519 1.00757 0.96061 1.06104 1.22994 1.03517 0.96045 0.98805 0.93462 0.91876 0.92350 0.95628 0.92644 0.93591 0.89894 0.95498 0.95340 0.92053 0.86682 0.88286 0.89613 0.89180 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.65 37.15 0.32 -1.78 16 2 C 0.07 1.26 2.60 -67.59 -0.18 1.08 16 3 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.16 3.41 5.97 -3.60 -0.02 3.39 16 5 N -0.59 -15.48 3.02 -172.01 -0.52 -16.00 16 6 C -0.26 -7.16 9.60 -15.06 -0.14 -7.30 16 7 H 0.06 1.74 7.86 -52.49 -0.41 1.33 16 8 C 0.01 0.15 5.02 -17.43 -0.09 0.06 16 9 N -0.90 -26.59 11.25 55.49 0.62 -25.97 16 10 Si 0.90 21.92 29.57 -169.99 -5.03 16.89 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.18 4.48 5.35 -3.60 -0.02 4.46 16 15 C 0.03 0.67 4.24 -3.69 -0.02 0.65 16 16 N -0.50 -9.27 4.68 -218.42 -1.02 -10.29 16 17 C 0.02 0.32 5.79 -67.70 -0.39 -0.07 16 18 C -0.23 -3.17 9.52 -26.73 -0.25 -3.43 16 19 C -0.18 -2.40 9.97 -26.73 -0.27 -2.67 16 20 H 0.05 0.61 6.35 -51.93 -0.33 0.28 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 25 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.08 2.26 6.38 -51.93 -0.33 1.93 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.03 0.60 7.43 -51.93 -0.39 0.21 16 29 H 0.06 1.15 6.39 -51.93 -0.33 0.82 16 30 H 0.12 1.60 5.75 -51.93 -0.30 1.30 16 31 H 0.10 1.51 5.92 -51.93 -0.31 1.21 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.38 7.53 -51.93 -0.39 0.99 16 LS Contribution 263.40 15.07 3.97 3.97 Total: -1.00 -29.54 263.40 -8.32 -37.86 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.29 Total: -0.87 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.06 Total: -5.60 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.92 Total: -52.26 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.54 -8.32 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103127.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.495 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds