Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.49244 * 2 1 4 4 C 1.53242 * 109.49270 * 239.92249 * 2 1 3 5 5 N 1.47075 * 108.52236 * 186.20819 * 4 2 1 6 6 C 1.36939 * 120.88304 * 231.16205 * 5 4 2 7 7 H 1.07995 * 119.99656 * 31.97083 * 6 5 4 8 8 C 1.38813 * 120.00185 * 211.97698 * 6 5 4 9 9 N 1.31615 * 120.00196 * 12.05602 * 8 6 5 10 10 Si 1.86796 * 119.99832 * 192.06504 * 8 6 5 11 11 H 1.48499 * 109.47494 * 89.99607 * 10 8 6 12 12 H 1.48503 * 109.47074 * 209.99766 * 10 8 6 13 13 H 1.48502 * 109.47141 * 329.99302 * 10 8 6 14 14 C 1.47078 * 118.24026 * 51.18783 * 5 4 2 15 15 C 1.53245 * 108.52027 * 308.81559 * 14 5 4 16 16 N 1.46894 * 109.49565 * 120.06018 * 2 1 3 17 17 C 1.46900 * 110.99757 * 307.21036 * 16 2 1 18 18 C 1.53009 * 117.49865 * 243.88275 * 17 16 2 19 19 C 1.53002 * 59.99988 * 252.51120 * 18 17 16 20 20 H 1.09002 * 109.46972 * 308.96395 * 1 2 3 21 21 H 1.09000 * 109.46958 * 188.96840 * 1 2 3 22 22 H 1.08996 * 109.47206 * 68.96713 * 1 2 3 23 23 H 1.09007 * 109.62669 * 305.92181 * 4 2 1 24 24 H 1.09005 * 109.62910 * 66.49582 * 4 2 1 25 25 H 0.96998 * 120.00435 * 180.02562 * 9 8 6 26 26 H 1.09001 * 109.63395 * 189.10443 * 14 5 4 27 27 H 1.09002 * 109.78762 * 68.61483 * 14 5 4 28 28 H 1.08995 * 109.48638 * 293.87014 * 15 14 5 29 29 H 1.08994 * 109.51440 * 173.80190 * 15 14 5 30 30 H 1.08995 * 115.55038 * 29.59208 * 17 16 2 31 31 H 1.09001 * 117.49786 * 0.02562 * 18 17 16 32 32 H 1.09007 * 117.49515 * 145.01899 * 18 17 16 33 33 H 1.08997 * 117.49720 * 252.51160 * 19 18 17 34 34 H 1.09001 * 117.49712 * 107.49301 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7240 -1.2501 5 7 3.5041 -0.8434 -1.1553 6 6 4.3103 -0.4435 -2.1875 7 1 4.0125 0.3822 -2.8166 8 6 5.5103 -1.0997 -2.4253 9 7 5.7661 -2.2422 -1.8240 10 14 6.7621 -0.3610 -3.5985 11 1 7.6833 0.5270 -2.8448 12 1 7.5403 -1.4499 -4.2419 13 1 6.0579 0.4272 -4.6417 14 6 4.0782 -1.4041 0.0773 15 6 3.4867 -0.6534 1.2751 16 7 2.0202 -0.6936 1.1985 17 6 1.4140 -0.1355 2.4146 18 6 2.3456 0.5437 3.4206 19 6 1.7361 -0.8220 3.7436 20 1 -0.3633 0.6462 0.7991 21 1 -0.3633 -1.0151 0.1602 22 1 -0.3633 0.3688 -0.9592 23 1 1.5956 -1.7172 -1.3060 24 1 1.7775 -0.1507 -2.1389 25 1 6.6047 -2.7005 -1.9898 26 1 5.1611 -1.2805 0.0661 27 1 3.8313 -2.4633 0.1507 28 1 3.8236 0.3830 1.2571 29 1 3.8157 -1.1268 2.2001 30 1 0.4144 0.2815 2.2929 31 1 3.4082 0.5768 3.1798 32 1 1.9588 1.4080 3.9607 33 1 0.9484 -0.8562 4.4961 34 1 2.3978 -1.6877 3.7155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261103127.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = 40.557738 kcal Electronic energy + Delta-G solvation = -14644.531223 eV Core-core repulsion = 12385.288492 eV Total energy + Delta-G solvation = -2259.242732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51034 -37.52695 -35.21879 -33.03280 -32.45923 -28.50194 -27.53711 -25.14122 -23.29456 -22.91874 -21.88540 -20.16001 -18.64207 -17.56612 -16.62580 -16.49677 -15.71401 -15.40275 -15.18195 -14.63837 -14.49201 -13.62426 -13.33625 -13.00140 -12.92864 -12.74156 -12.60056 -12.41165 -12.28322 -12.07465 -11.77220 -11.76776 -11.59730 -11.27680 -11.06783 -10.61961 -9.03850 -8.63073 -7.90031 -5.42376 1.44927 1.45842 1.55531 2.47702 2.75006 3.17974 3.27596 3.64034 3.91906 4.02987 4.15246 4.20725 4.26878 4.42330 4.50110 4.59683 4.73749 4.78706 4.84171 4.87992 5.00998 5.05505 5.09687 5.25397 5.29193 5.31049 5.43917 5.59043 5.62054 6.21184 6.34234 6.37792 7.10911 7.79012 8.36826 9.16458 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.045356 B = 0.009112 C = 0.008243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.194273 B = 3072.123068 C = 3395.808182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.075 3.925 3 H 0.025 0.975 4 C 0.151 3.849 5 N -0.614 5.614 6 C -0.270 4.270 7 H 0.065 0.935 8 C -0.048 4.048 9 N -0.936 5.936 10 Si 0.973 3.027 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.267 1.267 14 C 0.189 3.811 15 C 0.053 3.947 16 N -0.508 5.508 17 C 0.004 3.996 18 C -0.220 4.220 19 C -0.164 4.164 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.014 0.986 24 H 0.059 0.941 25 H 0.251 0.749 26 H 0.051 0.949 27 H -0.003 1.003 28 H 0.021 0.979 29 H 0.075 0.925 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 5.579 8.390 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.035 4.035 3 H 0.043 0.957 4 C 0.025 3.975 5 N -0.338 5.338 6 C -0.400 4.400 7 H 0.083 0.917 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.800 3.200 11 H -0.211 1.211 12 H -0.218 1.218 13 H -0.191 1.191 14 C 0.063 3.937 15 C -0.076 4.076 16 N -0.232 5.232 17 C -0.105 4.105 18 C -0.259 4.259 19 C -0.202 4.202 20 H 0.091 0.909 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.015 0.985 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.091 4.981 8.277 13.265 hybrid contribution 1.393 0.700 -0.621 1.678 sum -7.698 5.681 7.656 12.253 Atomic orbital electron populations 1.21811 0.91857 1.02661 1.02725 1.22056 0.96575 0.94500 0.90337 0.95681 1.21190 0.83818 0.96914 0.95560 1.44345 1.01148 1.73949 1.14378 1.19510 1.01654 1.10207 1.08672 0.91692 1.25997 1.02096 0.95606 1.00680 1.70162 1.24656 1.15993 1.47273 0.85198 0.78817 0.77232 0.78757 1.21064 1.21844 1.19142 1.20555 0.96418 0.93007 0.83737 1.22617 0.87913 0.98086 0.99018 1.61825 1.05983 1.53755 1.01590 1.23006 0.99281 1.02109 0.86100 1.23531 0.99601 0.97357 1.05437 1.23077 1.03726 0.95238 0.98132 0.90894 0.91921 0.91008 0.96820 0.92256 0.93959 0.93061 0.98500 0.96116 0.90666 0.84462 0.90005 0.87193 0.86241 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.65 71.98 0.62 -2.86 16 2 C 0.07 2.69 2.60 45.00 0.12 2.80 16 3 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 4 C 0.15 6.68 5.97 86.35 0.52 7.20 16 5 N -0.61 -32.82 3.02 -698.11 -2.11 -34.92 16 6 C -0.27 -15.46 9.60 84.03 0.81 -14.65 16 7 H 0.07 3.61 7.86 -2.91 -0.02 3.58 16 8 C -0.05 -2.76 5.02 84.86 0.43 -2.33 16 9 N -0.94 -56.93 11.25 21.65 0.24 -56.69 16 10 Si 0.97 45.68 29.57 68.60 2.03 47.71 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 C 0.19 9.77 5.35 86.35 0.46 10.23 16 15 C 0.05 2.17 4.24 86.38 0.37 2.53 16 16 N -0.51 -18.40 4.68 -844.94 -3.96 -22.36 16 17 C 0.00 0.11 5.79 44.92 0.26 0.37 16 18 C -0.22 -5.57 9.52 30.60 0.29 -5.28 16 19 C -0.16 -3.97 9.97 30.60 0.30 -3.66 16 20 H 0.07 1.56 6.35 -2.39 -0.02 1.55 16 21 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 23 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 24 H 0.06 2.52 7.95 -2.38 -0.02 2.50 16 25 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.05 2.93 6.38 -2.39 -0.02 2.92 16 27 H 0.00 -0.18 8.14 -2.39 -0.02 -0.19 16 28 H 0.02 0.88 7.43 -2.39 -0.02 0.86 16 29 H 0.08 2.83 6.39 -2.39 -0.02 2.81 16 30 H 0.14 3.21 5.75 -2.39 -0.01 3.19 16 31 H 0.08 2.37 5.92 -2.39 -0.01 2.36 16 32 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.21 7.53 -2.39 -0.02 2.19 16 Total: -1.00 -64.88 263.40 1.45 -63.44 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.06 Total: 8.48 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.17 Total: -5.66 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -5.82 Total: -113.97 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -64.88 1.45 -63.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103127.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.996 kcal (2) G-P(sol) polarization free energy of solvation -64.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds