Wall clock time and date at job start Mon Mar 30 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00015 * 2 1 4 4 H 1.48507 * 109.47055 * 354.86709 * 3 2 1 5 5 H 1.48501 * 109.47337 * 114.86638 * 3 2 1 6 6 H 1.48497 * 109.47237 * 234.86890 * 3 2 1 7 7 C 1.38809 * 119.99674 * 179.72287 * 2 1 3 8 8 H 1.07995 * 120.00834 * 354.90350 * 7 2 1 9 9 N 1.36939 * 119.99667 * 174.90583 * 7 2 1 10 10 C 1.47070 * 136.05800 * 7.92137 * 9 7 2 11 11 C 1.53754 * 87.88867 * 152.96609 * 10 9 7 12 12 N 1.46895 * 114.39533 * 272.67698 * 11 10 9 13 13 C 1.46849 * 111.00199 * 32.79529 * 12 11 10 14 14 C 1.53037 * 109.52426 * 174.16236 * 13 12 11 15 15 C 1.53115 * 109.27891 * 59.17918 * 14 13 12 16 16 C 1.53117 * 109.15923 * 302.34427 * 15 14 13 17 17 C 1.46849 * 111.00167 * 268.58421 * 12 11 10 18 18 C 1.47070 * 136.06015 * 188.29907 * 9 7 2 19 19 H 0.97009 * 120.00215 * 177.88384 * 1 2 3 20 20 H 1.09004 * 113.46408 * 267.70081 * 10 9 7 21 21 H 1.09000 * 113.46679 * 38.13471 * 10 9 7 22 22 H 1.09001 * 114.08458 * 139.77824 * 11 10 9 23 23 H 1.08992 * 109.46084 * 294.17786 * 13 12 11 24 24 H 1.08998 * 109.46299 * 54.14351 * 13 12 11 25 25 H 1.09005 * 109.50141 * 299.23406 * 14 13 12 26 26 H 1.09002 * 109.50319 * 179.12029 * 14 13 12 27 27 H 1.08999 * 109.52026 * 182.44048 * 15 14 13 28 28 H 1.08990 * 109.52389 * 62.25146 * 15 14 13 29 29 H 1.09002 * 109.50364 * 297.71055 * 16 15 14 30 30 H 1.09006 * 109.50350 * 177.59543 * 16 15 14 31 31 H 1.09002 * 109.45885 * 305.85557 * 17 12 11 32 32 H 1.09001 * 109.45813 * 65.82143 * 17 12 11 33 33 H 1.09007 * 113.46477 * 321.86242 * 18 9 7 34 34 H 1.08996 * 113.47036 * 92.29511 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2899 2.7436 -0.1253 5 1 3.0075 1.7520 1.2703 6 1 3.1954 1.6436 -1.1450 7 6 2.0101 -1.2022 0.0058 8 1 1.4734 -2.1352 0.0934 9 7 3.3755 -1.2050 -0.0995 10 6 4.4404 -0.1907 -0.0906 11 6 5.3909 -1.2754 0.4424 12 7 5.3938 -1.4142 1.9048 13 6 4.0678 -1.1219 2.4639 14 6 4.0697 -1.4164 3.9656 15 6 5.1338 -0.5531 4.6488 16 6 6.4976 -0.8416 4.0152 17 6 6.4254 -0.5637 2.5121 18 6 4.4217 -2.2231 -0.2779 19 1 -0.4851 -0.8395 -0.0310 20 1 4.7058 0.1687 -1.0849 21 1 4.2628 0.6189 0.6173 22 1 6.3902 -1.2436 0.0083 23 1 3.8282 -0.0713 2.3001 24 1 3.3209 -1.7454 1.9724 25 1 4.2956 -2.4701 4.1295 26 1 3.0899 -1.1845 4.3832 27 1 5.1684 -0.7910 5.7119 28 1 4.8871 0.5004 4.5182 29 1 6.7618 -1.8862 4.1800 30 1 7.2526 -0.1989 4.4682 31 1 7.3909 -0.7818 2.0556 32 1 6.1748 0.4843 2.3481 33 1 4.2282 -3.1451 0.2705 34 1 4.6823 -2.3995 -1.3214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:20 Heat of formation + Delta-G solvation = 67.707297 kcal Electronic energy + Delta-G solvation = -15007.686474 eV Core-core repulsion = 12749.621036 eV Total energy + Delta-G solvation = -2258.065438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.77956 -36.79280 -32.72874 -31.52282 -30.29197 -27.76647 -25.31038 -23.88213 -22.64096 -21.70888 -19.55154 -18.76405 -17.39227 -15.98282 -15.26029 -14.32339 -14.11248 -13.98062 -13.85555 -13.42431 -13.14246 -12.74110 -12.31358 -11.70584 -11.49907 -11.22262 -10.94052 -10.67369 -10.54811 -10.35946 -10.25037 -10.01381 -9.93055 -9.31909 -9.05009 -8.80259 -7.67779 -7.04339 -6.28945 -3.20726 3.37934 3.42547 3.62875 4.32295 4.58805 4.82463 5.10108 5.11725 5.24762 5.34315 5.44001 5.63766 5.77550 5.86471 5.91770 6.00184 6.02540 6.10681 6.14203 6.29711 6.30708 6.34038 6.40754 6.49468 6.54100 6.65950 6.82118 7.11227 7.18066 7.66730 7.76890 8.25638 8.99851 9.52703 10.41376 11.22166 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034046 B = 0.012605 C = 0.011584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.217488 B = 2220.743819 C = 2416.467984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.023 4.023 3 Si 1.069 2.931 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.299 4.299 8 H 0.083 0.917 9 N -0.625 5.625 10 C 0.062 3.938 11 C 0.043 3.957 12 N -0.511 5.511 13 C 0.053 3.947 14 C -0.118 4.118 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.053 3.947 18 C 0.125 3.875 19 H 0.261 0.739 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.085 0.915 23 H 0.035 0.965 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.178 -1.116 5.901 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.222 4.222 3 Si 0.903 3.097 4 H -0.224 1.224 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.425 4.425 8 H 0.100 0.900 9 N -0.354 5.354 10 C -0.065 4.065 11 C -0.067 4.067 12 N -0.234 5.234 13 C -0.074 4.074 14 C -0.156 4.156 15 C -0.160 4.160 16 C -0.150 4.150 17 C -0.075 4.075 18 C -0.002 4.002 19 H 0.071 0.929 20 H 0.062 0.938 21 H 0.069 0.931 22 H 0.103 0.897 23 H 0.053 0.947 24 H 0.130 0.870 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.809 0.031 6.071 14.175 hybrid contribution -0.037 -0.723 -0.428 0.841 sum 12.772 -0.692 5.643 13.981 Atomic orbital electron populations 1.70914 1.05435 1.28994 1.52420 1.25629 0.96446 1.00792 0.99372 0.83719 0.73734 0.76268 0.75970 1.22394 1.22331 1.21627 1.20084 0.78180 0.95611 1.48648 0.89959 1.46119 1.01288 1.02542 1.85404 1.23434 0.89693 0.94920 0.98463 1.23314 0.97123 0.98105 0.88173 1.61929 1.05860 1.52802 1.02813 1.22367 0.90717 1.01274 0.93081 1.21659 0.98113 0.99747 0.96130 1.21597 0.95512 0.99974 0.98891 1.21543 0.96959 1.01754 0.94758 1.22053 0.95573 0.94987 0.94889 1.22463 0.87176 0.94122 0.96426 0.92930 0.93847 0.93062 0.89695 0.94667 0.86961 0.91884 0.91954 0.92517 0.92574 0.91407 0.92230 0.91355 0.95377 0.93045 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.63 13.71 55.49 0.76 -28.87 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 3 Si 1.07 27.46 25.07 -169.99 -4.26 23.20 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.29 -7.20 5.97 56.52 0.34 -6.86 16 6 H -0.29 -7.04 6.23 56.52 0.35 -6.68 16 7 C -0.30 -8.52 9.88 -15.06 -0.15 -8.67 16 8 H 0.08 2.48 8.05 -52.49 -0.42 2.06 16 9 N -0.62 -15.29 2.08 -184.62 -0.38 -15.67 16 10 C 0.06 1.35 4.77 -8.37 -0.04 1.31 16 11 C 0.04 0.78 4.37 -67.46 -0.29 0.49 16 12 N -0.51 -9.06 4.80 -226.30 -1.09 -10.15 16 13 C 0.05 1.06 4.19 -3.83 -0.02 1.04 16 14 C -0.12 -1.97 6.09 -26.65 -0.16 -2.13 16 15 C -0.12 -1.72 6.00 -26.61 -0.16 -1.88 16 16 C -0.11 -1.46 6.09 -26.65 -0.16 -1.62 16 17 C 0.05 0.79 5.45 -3.84 -0.02 0.77 16 18 C 0.12 2.52 7.94 -8.51 -0.07 2.45 16 19 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 20 H 0.04 0.93 7.63 -51.93 -0.40 0.53 16 21 H 0.05 1.17 3.38 -51.93 -0.18 1.00 16 22 H 0.09 1.30 8.03 -51.93 -0.42 0.89 16 23 H 0.04 0.80 5.90 -51.93 -0.31 0.49 16 24 H 0.11 2.62 5.27 -51.93 -0.27 2.35 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -30.71 253.57 -7.80 -38.51 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.48 Total: -1.80 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.17 Total: -9.04 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.71 Total: -54.69 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: -4.26 Total: 23.20 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.71 -7.80 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.214 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds