Wall clock time and date at job start Mon Mar 30 2020 02:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00015 * 2 1 4 4 H 1.48507 * 109.47055 * 354.86709 * 3 2 1 5 5 H 1.48501 * 109.47337 * 114.86638 * 3 2 1 6 6 H 1.48497 * 109.47237 * 234.86890 * 3 2 1 7 7 C 1.38809 * 119.99674 * 179.72287 * 2 1 3 8 8 H 1.07995 * 120.00834 * 354.90350 * 7 2 1 9 9 N 1.36939 * 119.99667 * 174.90583 * 7 2 1 10 10 C 1.47070 * 136.05800 * 7.92137 * 9 7 2 11 11 C 1.53754 * 87.88867 * 152.96609 * 10 9 7 12 12 N 1.46895 * 114.39533 * 272.67698 * 11 10 9 13 13 C 1.46849 * 111.00199 * 32.79529 * 12 11 10 14 14 C 1.53037 * 109.52426 * 174.16236 * 13 12 11 15 15 C 1.53115 * 109.27891 * 59.17918 * 14 13 12 16 16 C 1.53117 * 109.15923 * 302.34427 * 15 14 13 17 17 C 1.46849 * 111.00167 * 268.58421 * 12 11 10 18 18 C 1.47070 * 136.06015 * 188.29907 * 9 7 2 19 19 H 0.97009 * 120.00215 * 177.88384 * 1 2 3 20 20 H 1.09004 * 113.46408 * 267.70081 * 10 9 7 21 21 H 1.09000 * 113.46679 * 38.13471 * 10 9 7 22 22 H 1.09001 * 114.08458 * 139.77824 * 11 10 9 23 23 H 1.08992 * 109.46084 * 294.17786 * 13 12 11 24 24 H 1.08998 * 109.46299 * 54.14351 * 13 12 11 25 25 H 1.09005 * 109.50141 * 299.23406 * 14 13 12 26 26 H 1.09002 * 109.50319 * 179.12029 * 14 13 12 27 27 H 1.08999 * 109.52026 * 182.44048 * 15 14 13 28 28 H 1.08990 * 109.52389 * 62.25146 * 15 14 13 29 29 H 1.09002 * 109.50364 * 297.71055 * 16 15 14 30 30 H 1.09006 * 109.50350 * 177.59543 * 16 15 14 31 31 H 1.09002 * 109.45885 * 305.85557 * 17 12 11 32 32 H 1.09001 * 109.45813 * 65.82143 * 17 12 11 33 33 H 1.09007 * 113.46477 * 321.86242 * 18 9 7 34 34 H 1.08996 * 113.47036 * 92.29511 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2899 2.7436 -0.1253 5 1 3.0075 1.7520 1.2703 6 1 3.1954 1.6436 -1.1450 7 6 2.0101 -1.2022 0.0058 8 1 1.4734 -2.1352 0.0934 9 7 3.3755 -1.2050 -0.0995 10 6 4.4404 -0.1907 -0.0906 11 6 5.3909 -1.2754 0.4424 12 7 5.3938 -1.4142 1.9048 13 6 4.0678 -1.1219 2.4639 14 6 4.0697 -1.4164 3.9656 15 6 5.1338 -0.5531 4.6488 16 6 6.4976 -0.8416 4.0152 17 6 6.4254 -0.5637 2.5121 18 6 4.4217 -2.2231 -0.2779 19 1 -0.4851 -0.8395 -0.0310 20 1 4.7058 0.1687 -1.0849 21 1 4.2628 0.6189 0.6173 22 1 6.3902 -1.2436 0.0083 23 1 3.8282 -0.0713 2.3001 24 1 3.3209 -1.7454 1.9724 25 1 4.2956 -2.4701 4.1295 26 1 3.0899 -1.1845 4.3832 27 1 5.1684 -0.7910 5.7119 28 1 4.8871 0.5004 4.5182 29 1 6.7618 -1.8862 4.1800 30 1 7.2526 -0.1989 4.4682 31 1 7.3909 -0.7818 2.0556 32 1 6.1748 0.4843 2.3481 33 1 4.2282 -3.1451 0.2705 34 1 4.6823 -2.3995 -1.3214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138783.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:19 Heat of formation + Delta-G solvation = 46.225603 kcal Electronic energy + Delta-G solvation = -15008.617991 eV Core-core repulsion = 12749.621036 eV Total energy + Delta-G solvation = -2258.996955 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33952 -38.21747 -34.76803 -33.10911 -31.57252 -29.67579 -27.01028 -25.44562 -23.91919 -23.46186 -21.02885 -20.35394 -19.38781 -17.58740 -16.96116 -15.90269 -15.70643 -15.52583 -15.26026 -15.16261 -14.77642 -14.09294 -13.76286 -13.37772 -13.07289 -12.79370 -12.63496 -12.41381 -11.99248 -11.96335 -11.61635 -11.52528 -11.27876 -11.15312 -11.05343 -10.86103 -9.19740 -9.05770 -8.62161 -5.45158 1.29567 1.38752 1.58381 2.47950 2.92276 3.02729 3.22817 3.65258 3.95031 4.03709 4.12310 4.29859 4.37354 4.46637 4.58751 4.63650 4.68974 4.72298 4.79924 4.85979 4.94616 4.99384 5.09341 5.17020 5.19072 5.25236 5.27406 5.50374 5.50751 5.94986 6.18135 6.38612 6.70995 7.33644 8.30256 8.90988 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.034046 B = 0.012605 C = 0.011584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.217488 B = 2220.743819 C = 2416.467984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 1.108 2.892 4 H -0.307 1.307 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.273 4.273 8 H 0.049 0.951 9 N -0.653 5.653 10 C 0.055 3.945 11 C 0.066 3.934 12 N -0.511 5.511 13 C 0.064 3.936 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.107 4.107 17 C 0.048 3.952 18 C 0.122 3.878 19 H 0.246 0.754 20 H 0.057 0.943 21 H 0.040 0.960 22 H 0.132 0.868 23 H 0.003 0.997 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.019 0.981 33 H 0.044 0.956 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.974 -0.838 6.484 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.275 4.275 3 Si 0.936 3.064 4 H -0.235 1.235 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.401 4.401 8 H 0.066 0.934 9 N -0.382 5.382 10 C -0.071 4.071 11 C -0.044 4.044 12 N -0.234 5.234 13 C -0.065 4.065 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.004 4.004 19 H 0.055 0.945 20 H 0.074 0.926 21 H 0.058 0.942 22 H 0.150 0.850 23 H 0.021 0.979 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.674 0.274 6.654 17.954 hybrid contribution -1.170 -0.955 -0.586 1.620 sum 15.503 -0.681 6.068 16.662 Atomic orbital electron populations 1.71008 1.06732 1.28126 1.56179 1.26794 0.96470 1.04081 1.00150 0.83240 0.73117 0.72578 0.77441 1.23543 1.20855 1.18958 1.19870 0.80581 0.94040 1.45615 0.93352 1.46170 1.00562 1.05673 1.85778 1.23653 0.89431 0.95056 0.98998 1.23285 0.98216 0.94551 0.88395 1.61957 1.05168 1.53583 1.02680 1.22054 0.91223 0.98093 0.95091 1.21628 0.98951 1.00861 0.94068 1.21593 0.95288 0.98683 1.00143 1.21556 0.96686 1.02885 0.93356 1.22265 0.95495 0.93888 0.96283 1.22696 0.86238 0.93522 0.97894 0.94489 0.92552 0.94244 0.85038 0.97880 0.91276 0.91166 0.93035 0.90141 0.93480 0.90705 0.89298 0.88351 0.96247 0.93767 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.47 13.71 21.65 0.30 -64.17 16 2 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 3 Si 1.11 56.15 25.07 68.60 1.72 57.87 16 4 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 5 H -0.28 -13.43 5.97 99.48 0.59 -12.84 16 6 H -0.26 -12.14 6.23 99.48 0.62 -11.52 16 7 C -0.27 -16.09 9.88 84.03 0.83 -15.26 16 8 H 0.05 3.10 8.05 -2.91 -0.02 3.08 16 9 N -0.65 -31.73 2.08 -738.00 -1.53 -33.27 16 10 C 0.06 2.25 4.77 83.26 0.40 2.65 16 11 C 0.07 2.15 4.37 45.47 0.20 2.35 16 12 N -0.51 -16.65 4.80 -869.89 -4.17 -20.83 16 13 C 0.06 2.51 4.19 86.33 0.36 2.87 16 14 C -0.12 -3.78 6.09 30.64 0.19 -3.59 16 15 C -0.12 -3.03 6.00 30.67 0.18 -2.84 16 16 C -0.11 -2.31 6.09 30.64 0.19 -2.12 16 17 C 0.05 1.22 5.45 86.32 0.47 1.69 16 18 C 0.12 4.68 7.94 83.18 0.66 5.35 16 19 H 0.25 16.33 8.73 -92.70 -0.81 15.53 16 20 H 0.06 2.19 7.63 -2.39 -0.02 2.18 16 21 H 0.04 1.73 3.38 -2.39 -0.01 1.72 16 22 H 0.13 3.22 8.03 -2.39 -0.02 3.20 16 23 H 0.00 0.13 5.90 -2.39 -0.01 0.12 16 24 H 0.07 3.31 5.27 -2.39 -0.01 3.30 16 25 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.10 1.96 8.05 -2.39 -0.02 1.94 16 32 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -69.44 253.57 1.07 -68.37 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.82 Total: 5.55 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 3.94 Total: -13.52 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -5.41 Total: -118.26 kcal Atomic # 14 Polarization: 56.15 SS G_CDS: 1.72 Total: 57.87 kcal Total: -69.44 1.07 -68.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138783.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.593 kcal (2) G-P(sol) polarization free energy of solvation -69.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds