Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99594 * 2 1 4 4 H 1.48504 * 109.47222 * 240.00141 * 3 2 1 5 5 H 1.48501 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47169 * 120.00177 * 3 2 1 7 7 C 1.37871 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99458 * 174.75758 * 7 2 1 9 9 C 1.50693 * 120.00423 * 354.75818 * 7 2 1 10 10 H 1.09008 * 109.47082 * 4.74695 * 9 7 2 11 11 C 1.52994 * 109.47608 * 124.74730 * 9 7 2 12 12 C 1.52998 * 117.49724 * 3.11619 * 11 9 7 13 13 C 1.52998 * 60.00141 * 252.51228 * 12 11 9 14 14 N 1.46904 * 109.47353 * 244.75051 * 9 7 2 15 15 C 1.48533 * 110.99816 * 302.60426 * 14 9 7 16 16 C 1.54938 * 103.22972 * 159.71870 * 15 14 9 17 17 C 1.54599 * 102.91791 * 322.58355 * 16 15 14 18 18 H 1.08997 * 110.30468 * 263.03810 * 17 16 15 19 19 N 1.46903 * 110.30506 * 140.87409 * 17 16 15 20 20 C 1.47905 * 110.99915 * 59.99516 * 14 9 7 21 21 H 0.96999 * 119.99732 * 185.23724 * 1 2 3 22 22 H 1.09002 * 115.55049 * 148.82470 * 11 9 7 23 23 H 1.09002 * 117.49979 * 0.02562 * 12 11 9 24 24 H 1.09006 * 117.50184 * 145.02047 * 12 11 9 25 25 H 1.09002 * 117.49729 * 252.51110 * 13 12 11 26 26 H 1.08997 * 117.50084 * 107.49287 * 13 12 11 27 27 H 1.09002 * 110.66312 * 278.15276 * 15 14 9 28 28 H 1.08995 * 110.66708 * 41.27987 * 15 14 9 29 29 H 1.08994 * 110.72464 * 204.22260 * 16 15 14 30 30 H 1.09000 * 110.87376 * 81.01041 * 16 15 14 31 31 H 1.00892 * 111.00242 * 64.28157 * 19 17 16 32 32 H 1.00901 * 110.99786 * 188.23814 * 19 17 16 33 33 H 1.09002 * 109.91882 * 333.51310 * 20 14 9 34 34 H 1.08998 * 109.91719 * 94.80535 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1958 -0.0860 9 6 1.2559 -2.4964 0.1181 10 1 0.1835 -2.3012 0.1090 11 6 1.6193 -3.4027 -1.0597 12 6 2.6706 -2.8912 -2.0466 13 6 1.1981 -2.9467 -2.4581 14 7 1.6223 -3.1590 1.3770 15 6 3.0884 -3.3850 1.4524 16 6 3.3406 -3.5732 2.9695 17 6 2.3635 -2.5610 3.6105 18 1 2.8829 -1.6329 3.8490 19 7 1.7580 -3.1332 4.8205 20 6 1.2849 -2.3103 2.5404 21 1 -0.4850 -0.8366 0.0767 22 1 1.6014 -4.4727 -0.8526 23 1 3.1037 -1.9092 -1.8564 24 1 3.3448 -3.6247 -2.4888 25 1 0.9035 -3.7167 -3.1712 26 1 0.6621 -2.0011 -2.5390 27 1 3.3680 -4.2832 0.9016 28 1 3.6312 -2.5176 1.0769 29 1 4.3718 -3.3272 3.2225 30 1 3.1010 -4.5903 3.2798 31 1 2.4561 -3.3018 5.5291 32 1 1.0220 -2.5391 5.1720 33 1 1.2892 -1.2603 2.2478 34 1 0.3047 -2.5860 2.9293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = 32.015124 kcal Electronic energy + Delta-G solvation = -14798.057333 eV Core-core repulsion = 12538.444166 eV Total energy + Delta-G solvation = -2259.613167 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.57622 -36.29479 -33.38476 -32.25569 -29.29747 -27.06799 -25.12109 -23.60280 -21.37134 -20.66947 -19.51745 -19.22652 -16.36302 -15.71263 -15.02670 -14.80253 -14.24732 -13.81128 -13.51553 -13.47527 -13.02472 -11.90147 -11.54300 -11.42372 -10.90137 -10.85504 -10.48922 -10.40795 -10.39134 -10.26037 -10.09280 -9.76982 -9.29154 -9.17499 -8.62005 -8.47012 -8.35224 -7.00859 -6.39627 -4.16339 3.34891 3.36154 3.54581 4.42249 4.84308 4.91477 5.12233 5.31234 5.33196 5.56590 5.83728 5.93420 6.05419 6.11033 6.24208 6.34483 6.42179 6.49905 6.59555 6.66752 6.68967 6.90975 6.95033 6.99590 7.07982 7.25291 7.42127 7.57414 7.73801 8.02666 8.05742 8.37433 8.50346 8.78453 9.56267 10.92931 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.014658 C = 0.010749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.223847 B = 1909.748317 C = 2604.268623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.031 3.969 3 Si 1.057 2.943 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.289 1.289 7 C -0.609 4.609 8 H 0.054 0.946 9 C 0.197 3.803 10 H 0.058 0.942 11 C -0.126 4.126 12 C -0.176 4.176 13 C -0.180 4.180 14 N -0.512 5.512 15 C 0.046 3.954 16 C -0.117 4.117 17 C 0.080 3.920 18 H 0.032 0.968 19 N -0.840 5.840 20 C 0.052 3.948 21 H 0.272 0.728 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.331 0.669 32 H 0.337 0.663 33 H 0.067 0.933 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 -3.670 3.878 7.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.176 4.176 3 Si 0.885 3.115 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.216 1.216 7 C -0.648 4.648 8 H 0.072 0.928 9 C 0.091 3.909 10 H 0.076 0.924 11 C -0.145 4.145 12 C -0.212 4.212 13 C -0.218 4.218 14 N -0.236 5.236 15 C -0.083 4.083 16 C -0.156 4.156 17 C -0.032 4.032 18 H 0.050 0.950 19 N -0.369 5.369 20 C -0.077 4.077 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.232 -3.125 3.329 6.226 hybrid contribution 1.048 0.012 0.436 1.135 sum 5.281 -3.113 3.765 7.194 Atomic orbital electron populations 1.70847 1.06788 1.31169 1.45532 1.25738 0.96463 1.02303 0.93063 0.83714 0.75160 0.76015 0.76597 1.21363 1.20760 1.21565 1.22243 0.94916 0.92295 1.55375 0.92814 1.19243 0.97399 0.89988 0.84293 0.92390 1.22331 1.02942 0.97880 0.91311 1.22972 0.91166 1.03008 1.04094 1.22681 0.98725 1.02259 0.98110 1.65234 1.12241 1.42831 1.03312 1.22934 0.91648 1.00135 0.93571 1.22551 0.96799 0.99517 0.96698 1.22235 0.95490 0.94674 0.90759 0.95024 1.58876 1.15817 1.53905 1.08303 1.22628 0.96484 0.98540 0.90063 0.91494 0.90302 0.87357 0.91748 0.91089 0.89013 0.92206 0.92627 0.92919 0.90905 0.85771 0.85103 0.91478 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.77 13.65 55.43 0.76 -25.01 16 2 C 0.03 0.81 4.76 -17.82 -0.08 0.73 16 3 Si 1.06 24.15 29.91 -169.99 -5.08 19.07 16 4 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.61 -15.50 4.36 -34.45 -0.15 -15.65 16 8 H 0.05 1.40 5.63 -52.48 -0.30 1.10 16 9 C 0.20 4.76 2.51 -68.87 -0.17 4.59 16 10 H 0.06 1.57 5.63 -51.92 -0.29 1.28 16 11 C -0.13 -2.75 5.09 -90.62 -0.46 -3.21 16 12 C -0.18 -3.62 9.64 -26.73 -0.26 -3.88 16 13 C -0.18 -3.75 10.12 -26.73 -0.27 -4.02 16 14 N -0.51 -11.44 5.30 -223.89 -1.19 -12.62 16 15 C 0.05 0.92 5.69 -1.90 -0.01 0.91 16 16 C -0.12 -2.04 6.78 -24.87 -0.17 -2.21 16 17 C 0.08 1.44 4.12 -66.35 -0.27 1.16 16 18 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 19 N -0.84 -12.70 9.14 -3.51 -0.03 -12.73 16 20 C 0.05 1.12 6.21 -2.75 -0.02 1.10 16 21 H 0.27 7.80 6.25 -40.82 -0.26 7.54 16 22 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 23 H 0.11 2.44 5.97 -51.93 -0.31 2.13 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 27 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 28 H 0.06 1.22 5.91 -51.93 -0.31 0.91 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 31 H 0.33 4.17 9.08 -39.30 -0.36 3.81 16 32 H 0.34 4.69 8.99 -39.29 -0.35 4.34 16 33 H 0.07 1.66 6.02 -51.93 -0.31 1.34 16 34 H 0.06 1.31 7.91 -51.93 -0.41 0.89 16 LS Contribution 264.93 15.07 3.99 3.99 Total: -1.00 -27.32 264.93 -8.48 -35.81 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.06 Total: 11.98 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -1.87 Total: -20.48 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.46 Total: -50.36 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.32 -8.48 -35.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.820 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds