Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99594 * 2 1 4 4 H 1.48504 * 109.47222 * 240.00141 * 3 2 1 5 5 H 1.48501 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47169 * 120.00177 * 3 2 1 7 7 C 1.37871 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99458 * 174.75758 * 7 2 1 9 9 C 1.50693 * 120.00423 * 354.75818 * 7 2 1 10 10 H 1.09008 * 109.47082 * 4.74695 * 9 7 2 11 11 C 1.52994 * 109.47608 * 124.74730 * 9 7 2 12 12 C 1.52998 * 117.49724 * 3.11619 * 11 9 7 13 13 C 1.52998 * 60.00141 * 252.51228 * 12 11 9 14 14 N 1.46904 * 109.47353 * 244.75051 * 9 7 2 15 15 C 1.48533 * 110.99816 * 302.60426 * 14 9 7 16 16 C 1.54938 * 103.22972 * 159.71870 * 15 14 9 17 17 C 1.54599 * 102.91791 * 322.58355 * 16 15 14 18 18 H 1.08997 * 110.30468 * 263.03810 * 17 16 15 19 19 N 1.46903 * 110.30506 * 140.87409 * 17 16 15 20 20 C 1.47905 * 110.99915 * 59.99516 * 14 9 7 21 21 H 0.96999 * 119.99732 * 185.23724 * 1 2 3 22 22 H 1.09002 * 115.55049 * 148.82470 * 11 9 7 23 23 H 1.09002 * 117.49979 * 0.02562 * 12 11 9 24 24 H 1.09006 * 117.50184 * 145.02047 * 12 11 9 25 25 H 1.09002 * 117.49729 * 252.51110 * 13 12 11 26 26 H 1.08997 * 117.50084 * 107.49287 * 13 12 11 27 27 H 1.09002 * 110.66312 * 278.15276 * 15 14 9 28 28 H 1.08995 * 110.66708 * 41.27987 * 15 14 9 29 29 H 1.08994 * 110.72464 * 204.22260 * 16 15 14 30 30 H 1.09000 * 110.87376 * 81.01041 * 16 15 14 31 31 H 1.00892 * 111.00242 * 64.28157 * 19 17 16 32 32 H 1.00901 * 110.99786 * 188.23814 * 19 17 16 33 33 H 1.09002 * 109.91882 * 333.51310 * 20 14 9 34 34 H 1.08998 * 109.91719 * 94.80535 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1958 -0.0860 9 6 1.2559 -2.4964 0.1181 10 1 0.1835 -2.3012 0.1090 11 6 1.6193 -3.4027 -1.0597 12 6 2.6706 -2.8912 -2.0466 13 6 1.1981 -2.9467 -2.4581 14 7 1.6223 -3.1590 1.3770 15 6 3.0884 -3.3850 1.4524 16 6 3.3406 -3.5732 2.9695 17 6 2.3635 -2.5610 3.6105 18 1 2.8829 -1.6329 3.8490 19 7 1.7580 -3.1332 4.8205 20 6 1.2849 -2.3103 2.5404 21 1 -0.4850 -0.8366 0.0767 22 1 1.6014 -4.4727 -0.8526 23 1 3.1037 -1.9092 -1.8564 24 1 3.3448 -3.6247 -2.4888 25 1 0.9035 -3.7167 -3.1712 26 1 0.6621 -2.0011 -2.5390 27 1 3.3680 -4.2832 0.9016 28 1 3.6312 -2.5176 1.0769 29 1 4.3718 -3.3272 3.2225 30 1 3.1010 -4.5903 3.2798 31 1 2.4561 -3.3018 5.5291 32 1 1.0220 -2.5391 5.1720 33 1 1.2892 -1.2603 2.2478 34 1 0.3047 -2.5860 2.9293 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = 12.451146 kcal Electronic energy + Delta-G solvation = -14798.905690 eV Core-core repulsion = 12538.444166 eV Total energy + Delta-G solvation = -2260.461525 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28831 -37.94816 -35.12328 -34.00622 -30.89476 -28.75723 -26.98133 -25.43238 -23.06611 -22.30417 -21.23230 -20.93676 -18.25767 -17.27406 -16.69497 -16.10919 -16.07137 -15.68923 -15.22388 -15.11083 -14.74547 -13.68820 -13.25971 -13.10878 -12.65213 -12.57503 -12.13247 -12.08169 -12.02690 -11.93871 -11.71583 -11.59577 -11.10288 -10.94462 -10.58965 -10.38527 -9.63479 -8.88363 -8.48560 -6.26691 1.48351 1.53074 1.71823 2.52504 3.11075 3.21586 3.53894 3.63776 3.80527 3.98906 4.23068 4.36140 4.37117 4.48159 4.63842 4.84281 4.85462 4.87431 4.94298 5.03005 5.06154 5.13976 5.23936 5.25866 5.36441 5.50675 5.61871 6.03232 6.11527 6.26192 6.46473 6.57420 6.64789 6.70776 7.52400 8.80768 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.014658 C = 0.010749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.223847 B = 1909.748317 C = 2604.268623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 1.095 2.905 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.593 4.593 8 H 0.049 0.951 9 C 0.199 3.801 10 H 0.020 0.980 11 C -0.138 4.138 12 C -0.160 4.160 13 C -0.176 4.176 14 N -0.518 5.518 15 C 0.046 3.954 16 C -0.106 4.106 17 C 0.088 3.912 18 H 0.033 0.967 19 N -0.838 5.838 20 C 0.053 3.947 21 H 0.257 0.743 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.350 0.650 32 H 0.344 0.656 33 H 0.030 0.970 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.852 -4.710 4.322 9.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.920 3.080 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.632 4.632 8 H 0.068 0.932 9 C 0.092 3.908 10 H 0.038 0.962 11 C -0.157 4.157 12 C -0.197 4.197 13 C -0.213 4.213 14 N -0.242 5.242 15 C -0.082 4.082 16 C -0.144 4.144 17 C -0.024 4.024 18 H 0.050 0.950 19 N -0.370 5.370 20 C -0.076 4.076 21 H 0.070 0.930 22 H 0.108 0.892 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.049 0.951 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.146 -4.186 3.790 8.346 hybrid contribution 0.445 0.270 0.317 0.609 sum 6.591 -3.916 4.106 8.697 Atomic orbital electron populations 1.70950 1.07822 1.30319 1.48470 1.26845 0.96431 1.05472 0.92783 0.83197 0.74414 0.72757 0.77680 1.19823 1.21565 1.20018 1.22329 0.94499 0.92898 1.53513 0.93238 1.19094 0.95035 0.90465 0.86212 0.96234 1.22255 1.04623 0.97935 0.90894 1.22921 0.91254 1.02598 1.02923 1.22667 0.98823 1.01705 0.98147 1.65165 1.14055 1.42320 1.02621 1.22958 0.89647 0.99645 0.95976 1.22504 0.98104 0.99641 0.94153 1.22042 0.94225 0.95257 0.90851 0.94960 1.58766 1.16466 1.53632 1.08098 1.22550 0.97607 0.96180 0.91266 0.93041 0.89160 0.89568 0.88357 0.87849 0.92120 0.91191 0.94549 0.90211 0.90171 0.83615 0.84312 0.95127 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.39 13.65 21.44 0.29 -55.10 16 2 C -0.02 -0.83 4.76 84.65 0.40 -0.42 16 3 Si 1.10 49.07 29.91 68.60 2.05 51.12 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.59 -30.66 4.36 25.60 0.11 -30.55 16 8 H 0.05 2.58 5.63 -2.91 -0.02 2.57 16 9 C 0.20 9.80 2.51 44.16 0.11 9.91 16 10 H 0.02 1.12 5.63 -2.38 -0.01 1.11 16 11 C -0.14 -5.95 5.09 -10.80 -0.05 -6.01 16 12 C -0.16 -6.32 9.64 30.59 0.30 -6.03 16 13 C -0.18 -7.17 10.12 30.59 0.31 -6.86 16 14 N -0.52 -23.09 5.30 -862.24 -4.57 -27.66 16 15 C 0.05 1.78 5.69 86.65 0.49 2.28 16 16 C -0.11 -3.37 6.78 31.80 0.22 -3.16 16 17 C 0.09 3.02 4.12 45.79 0.19 3.21 16 18 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 19 N -0.84 -23.40 9.14 -165.03 -1.51 -24.90 16 20 C 0.05 2.32 6.21 86.44 0.54 2.86 16 21 H 0.26 15.64 6.25 -92.71 -0.58 15.06 16 22 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 23 H 0.09 3.81 5.97 -2.39 -0.01 3.79 16 24 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 25 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 26 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 28 H 0.04 1.55 5.91 -2.39 -0.01 1.54 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.48 8.06 -2.39 -0.02 2.46 16 31 H 0.35 7.69 9.08 -89.70 -0.81 6.88 16 32 H 0.34 8.99 8.99 -89.69 -0.81 8.18 16 33 H 0.03 1.56 6.02 -2.39 -0.01 1.54 16 34 H 0.05 2.22 7.91 -2.39 -0.02 2.20 16 Total: -1.00 -59.76 264.93 -1.45 -61.21 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.33 Total: 30.10 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 2.61 Total: -34.77 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.79 Total: -107.66 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.12 kcal Total: -59.76 -1.45 -61.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.664 kcal (2) G-P(sol) polarization free energy of solvation -59.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds