Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99550 * 2 1 4 4 H 1.48500 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 299.99813 * 3 2 1 6 6 H 1.48502 * 109.47282 * 60.00345 * 3 2 1 7 7 C 1.37869 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00315 * 185.07530 * 7 2 1 9 9 C 1.50707 * 119.99929 * 5.07316 * 7 2 1 10 10 H 1.08999 * 109.47116 * 5.21277 * 9 7 2 11 11 C 1.53005 * 109.46892 * 245.21252 * 9 7 2 12 12 C 1.53002 * 117.52001 * 351.51222 * 11 9 7 13 13 C 1.52996 * 60.00055 * 107.47773 * 12 11 9 14 14 N 1.46896 * 109.47196 * 125.21671 * 9 7 2 15 15 C 1.48533 * 111.00021 * 177.60246 * 14 9 7 16 16 C 1.54941 * 103.22719 * 159.71516 * 15 14 9 17 17 C 1.54601 * 102.92057 * 322.59056 * 16 15 14 18 18 H 1.08997 * 110.30756 * 263.03387 * 17 16 15 19 19 N 1.46907 * 110.30534 * 140.87218 * 17 16 15 20 20 C 1.47906 * 110.99816 * 295.00033 * 14 9 7 21 21 H 0.97000 * 120.00133 * 359.97438 * 1 2 3 22 22 H 1.08992 * 115.54729 * 205.80453 * 11 9 7 23 23 H 1.08999 * 117.49433 * 214.97341 * 12 11 9 24 24 H 1.08996 * 117.49763 * 359.97438 * 12 11 9 25 25 H 1.09004 * 117.50105 * 252.50668 * 13 12 11 26 26 H 1.08997 * 117.50040 * 107.49004 * 13 12 11 27 27 H 1.08994 * 110.66691 * 278.15125 * 15 14 9 28 28 H 1.09000 * 110.66656 * 41.28933 * 15 14 9 29 29 H 1.08992 * 110.72762 * 204.22874 * 16 15 14 30 30 H 1.09006 * 110.71776 * 80.94538 * 16 15 14 31 31 H 1.00897 * 110.99960 * 64.28552 * 19 17 16 32 32 H 1.00903 * 110.99648 * 188.23084 * 19 17 16 33 33 H 1.09007 * 109.91808 * 333.51006 * 20 14 9 34 34 H 1.08998 * 109.91788 * 94.79844 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0814 -1.1958 0.0822 9 6 1.2556 -2.4965 -0.1165 10 1 0.1975 -2.2937 -0.2825 11 6 1.4246 -3.2988 1.1753 12 6 2.4261 -2.7752 2.2067 13 6 0.9238 -2.6617 2.4731 14 7 1.7892 -3.2693 -1.2461 15 6 1.1126 -4.5870 -1.3564 16 6 1.3888 -5.0057 -2.8224 17 6 1.2901 -3.6666 -3.5888 18 1 0.2979 -3.5528 -4.0253 19 7 2.3192 -3.6010 -4.6351 20 6 1.5358 -2.5773 -2.5285 21 1 -0.4850 0.8400 0.0004 22 1 1.3249 -4.3794 1.0740 23 1 2.9854 -3.5116 2.7839 24 1 2.9652 -1.8593 1.9649 25 1 0.4743 -1.6709 2.4067 26 1 0.4947 -3.3232 3.2256 27 1 1.5512 -5.3039 -0.6625 28 1 0.0417 -4.4855 -1.1807 29 1 0.6316 -5.7071 -3.1724 30 1 2.3867 -5.4333 -2.9199 31 1 2.1680 -4.3109 -5.3360 32 1 2.3529 -2.6828 -5.0521 33 1 0.6555 -1.9406 -2.4393 34 1 2.4037 -1.9787 -2.8052 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = 32.462963 kcal Electronic energy + Delta-G solvation = -14588.722949 eV Core-core repulsion = 12329.129202 eV Total energy + Delta-G solvation = -2259.593747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.42235 -36.21658 -33.14235 -32.29094 -29.49684 -27.08186 -25.83246 -23.08959 -21.23443 -20.93011 -19.46450 -18.60747 -16.34820 -15.47852 -15.26725 -14.85721 -14.56216 -13.84703 -13.51914 -12.95010 -12.65655 -11.96830 -11.65075 -11.44704 -11.06401 -10.94758 -10.59622 -10.51307 -10.42460 -10.33460 -10.02994 -9.65748 -9.10766 -9.07597 -8.64018 -8.51604 -8.36454 -7.05352 -6.02827 -4.06069 3.27793 3.36987 3.42828 4.40677 4.85363 4.92295 5.14782 5.24053 5.31770 5.53435 5.78069 5.95092 6.06770 6.17980 6.27369 6.30176 6.35825 6.50847 6.62059 6.65662 6.68208 6.76221 6.91420 7.15021 7.35054 7.46687 7.52016 7.60191 7.72210 7.88796 8.02675 8.37960 8.65648 9.09932 9.58048 11.02849 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.012839 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.279923 B = 2180.265101 C = 2934.410923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.887 3.113 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.486 4.486 8 H 0.061 0.939 9 C 0.212 3.788 10 H 0.046 0.954 11 C -0.130 4.130 12 C -0.171 4.171 13 C -0.178 4.178 14 N -0.505 5.505 15 C 0.032 3.968 16 C -0.115 4.115 17 C 0.073 3.927 18 H 0.030 0.970 19 N -0.837 5.837 20 C 0.067 3.933 21 H 0.260 0.740 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.331 0.669 32 H 0.338 0.662 33 H 0.044 0.956 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 -6.125 -4.115 7.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.525 4.525 8 H 0.079 0.921 9 C 0.106 3.894 10 H 0.064 0.936 11 C -0.149 4.149 12 C -0.208 4.208 13 C -0.216 4.216 14 N -0.230 5.230 15 C -0.096 4.096 16 C -0.154 4.154 17 C -0.038 4.038 18 H 0.048 0.952 19 N -0.367 5.367 20 C -0.061 4.061 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.151 0.849 33 H 0.062 0.938 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.493 -6.202 -3.411 7.233 hybrid contribution -1.344 1.245 -0.751 1.980 sum 0.149 -4.957 -4.162 6.474 Atomic orbital electron populations 1.69931 1.05894 1.26484 1.51044 1.24995 0.94806 0.99170 0.94781 0.86604 0.80514 0.83873 0.77497 1.19509 1.21096 1.21140 1.20970 0.93652 0.89331 1.48563 0.92078 1.19294 0.96060 0.89988 0.84043 0.93621 1.22436 1.03560 0.96537 0.92388 1.22869 0.91881 1.03148 1.02886 1.22711 0.97412 1.02613 0.98865 1.65015 1.53652 1.01539 1.02826 1.23138 0.96570 0.94851 0.95085 1.22541 1.01571 0.95705 0.95561 1.22357 0.91430 0.97189 0.92865 0.95243 1.58830 1.51945 1.08979 1.16904 1.22503 1.00680 0.94378 0.88566 0.93020 0.90967 0.91932 0.87507 0.88210 0.91576 0.91260 0.95117 0.92794 0.90325 0.85760 0.84912 0.93752 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 12.63 55.43 0.70 -24.36 16 2 C 0.06 1.73 5.45 -17.82 -0.10 1.64 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.49 -12.93 5.80 -34.44 -0.20 -13.13 16 8 H 0.06 1.69 7.22 -52.49 -0.38 1.31 16 9 C 0.21 5.25 1.87 -68.86 -0.13 5.12 16 10 H 0.05 1.29 6.77 -51.93 -0.35 0.93 16 11 C -0.13 -2.93 5.63 -90.62 -0.51 -3.44 16 12 C -0.17 -3.67 9.70 -26.73 -0.26 -3.93 16 13 C -0.18 -3.86 10.02 -26.73 -0.27 -4.13 16 14 N -0.51 -11.33 5.10 -223.88 -1.14 -12.47 16 15 C 0.03 0.61 5.52 -1.90 -0.01 0.60 16 16 C -0.12 -1.88 6.78 -24.87 -0.17 -2.05 16 17 C 0.07 1.24 4.12 -66.35 -0.27 0.97 16 18 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 19 N -0.84 -12.23 9.14 -3.51 -0.03 -12.26 16 20 C 0.07 1.44 5.76 -2.76 -0.02 1.42 16 21 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 22 H 0.07 1.52 6.43 -51.93 -0.33 1.18 16 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.11 2.49 6.15 -51.93 -0.32 2.17 16 25 H 0.10 2.43 8.14 -51.93 -0.42 2.01 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 1.26 7.19 -51.93 -0.37 0.88 16 28 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 31 H 0.33 3.96 9.08 -39.29 -0.36 3.60 16 32 H 0.34 4.57 8.99 -39.29 -0.35 4.22 16 33 H 0.04 1.06 7.65 -51.92 -0.40 0.66 16 34 H 0.07 1.68 7.91 -51.93 -0.41 1.27 16 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -27.97 270.87 -8.70 -36.68 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.36 Total: 9.17 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.93 Total: -16.93 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.47 Total: -49.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.97 -8.70 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.139 kcal (2) G-P(sol) polarization free energy of solvation -27.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds