Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99550 * 2 1 4 4 H 1.48500 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 299.99813 * 3 2 1 6 6 H 1.48502 * 109.47282 * 60.00345 * 3 2 1 7 7 C 1.37869 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00315 * 185.07530 * 7 2 1 9 9 C 1.50707 * 119.99929 * 5.07316 * 7 2 1 10 10 H 1.08999 * 109.47116 * 5.21277 * 9 7 2 11 11 C 1.53005 * 109.46892 * 245.21252 * 9 7 2 12 12 C 1.53002 * 117.52001 * 351.51222 * 11 9 7 13 13 C 1.52996 * 60.00055 * 107.47773 * 12 11 9 14 14 N 1.46896 * 109.47196 * 125.21671 * 9 7 2 15 15 C 1.48533 * 111.00021 * 177.60246 * 14 9 7 16 16 C 1.54941 * 103.22719 * 159.71516 * 15 14 9 17 17 C 1.54601 * 102.92057 * 322.59056 * 16 15 14 18 18 H 1.08997 * 110.30756 * 263.03387 * 17 16 15 19 19 N 1.46907 * 110.30534 * 140.87218 * 17 16 15 20 20 C 1.47906 * 110.99816 * 295.00033 * 14 9 7 21 21 H 0.97000 * 120.00133 * 359.97438 * 1 2 3 22 22 H 1.08992 * 115.54729 * 205.80453 * 11 9 7 23 23 H 1.08999 * 117.49433 * 214.97341 * 12 11 9 24 24 H 1.08996 * 117.49763 * 359.97438 * 12 11 9 25 25 H 1.09004 * 117.50105 * 252.50668 * 13 12 11 26 26 H 1.08997 * 117.50040 * 107.49004 * 13 12 11 27 27 H 1.08994 * 110.66691 * 278.15125 * 15 14 9 28 28 H 1.09000 * 110.66656 * 41.28933 * 15 14 9 29 29 H 1.08992 * 110.72762 * 204.22874 * 16 15 14 30 30 H 1.09006 * 110.71776 * 80.94538 * 16 15 14 31 31 H 1.00897 * 110.99960 * 64.28552 * 19 17 16 32 32 H 1.00903 * 110.99648 * 188.23084 * 19 17 16 33 33 H 1.09007 * 109.91808 * 333.51006 * 20 14 9 34 34 H 1.08998 * 109.91788 * 94.79844 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0814 -1.1958 0.0822 9 6 1.2556 -2.4965 -0.1165 10 1 0.1975 -2.2937 -0.2825 11 6 1.4246 -3.2988 1.1753 12 6 2.4261 -2.7752 2.2067 13 6 0.9238 -2.6617 2.4731 14 7 1.7892 -3.2693 -1.2461 15 6 1.1126 -4.5870 -1.3564 16 6 1.3888 -5.0057 -2.8224 17 6 1.2901 -3.6666 -3.5888 18 1 0.2979 -3.5528 -4.0253 19 7 2.3192 -3.6010 -4.6351 20 6 1.5358 -2.5773 -2.5285 21 1 -0.4850 0.8400 0.0004 22 1 1.3249 -4.3794 1.0740 23 1 2.9854 -3.5116 2.7839 24 1 2.9652 -1.8593 1.9649 25 1 0.4743 -1.6709 2.4067 26 1 0.4947 -3.3232 3.2256 27 1 1.5512 -5.3039 -0.6625 28 1 0.0417 -4.4855 -1.1807 29 1 0.6316 -5.7071 -3.1724 30 1 2.3867 -5.4333 -2.9199 31 1 2.1680 -4.3109 -5.3360 32 1 2.3529 -2.6828 -5.0521 33 1 0.6555 -1.9406 -2.4393 34 1 2.4037 -1.9787 -2.8052 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = 12.351980 kcal Electronic energy + Delta-G solvation = -14589.595027 eV Core-core repulsion = 12329.129202 eV Total energy + Delta-G solvation = -2260.465825 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.07106 -37.89986 -34.80635 -34.13028 -31.07996 -28.73529 -27.66968 -24.91720 -22.97418 -22.53636 -21.00645 -20.39395 -18.31295 -17.10971 -16.89734 -16.49656 -16.04762 -15.56272 -15.15881 -14.65643 -14.42459 -13.71715 -13.51247 -13.12281 -12.90055 -12.62178 -12.35728 -12.21170 -11.95343 -11.88535 -11.70418 -11.60721 -10.99868 -10.83370 -10.60706 -10.45255 -9.58989 -8.89100 -8.10146 -6.19140 1.35400 1.39372 1.50453 2.40614 3.07278 3.28337 3.59786 3.65268 3.80962 3.99571 4.31704 4.39492 4.47771 4.51673 4.59989 4.80678 4.89830 4.91159 4.98872 4.99752 5.08766 5.18196 5.30621 5.36265 5.52069 5.55545 5.69919 5.75355 6.20253 6.30411 6.44640 6.67711 6.79108 7.01124 7.47620 8.94569 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.012839 C = 0.009540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.279923 B = 2180.265101 C = 2934.410923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.021 3.979 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.488 4.488 8 H 0.047 0.953 9 C 0.218 3.782 10 H 0.005 0.995 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.174 4.174 14 N -0.517 5.517 15 C 0.030 3.970 16 C -0.103 4.103 17 C 0.083 3.917 18 H 0.039 0.961 19 N -0.839 5.839 20 C 0.070 3.930 21 H 0.259 0.741 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.023 0.977 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.351 0.649 32 H 0.345 0.655 33 H 0.007 0.993 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -7.683 -4.461 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.177 4.177 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.111 3.889 10 H 0.022 0.978 11 C -0.162 4.162 12 C -0.198 4.198 13 C -0.211 4.211 14 N -0.242 5.242 15 C -0.099 4.099 16 C -0.141 4.141 17 C -0.029 4.029 18 H 0.057 0.943 19 N -0.371 5.371 20 C -0.059 4.059 21 H 0.068 0.932 22 H 0.111 0.889 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.041 0.959 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.025 0.975 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.250 -7.773 -3.774 8.929 hybrid contribution -1.563 1.698 -0.657 2.400 sum 0.687 -6.074 -4.431 7.550 Atomic orbital electron populations 1.70048 1.07071 1.26950 1.52327 1.25596 0.95426 1.01916 0.94800 0.85749 0.79411 0.80544 0.77486 1.19241 1.20815 1.20779 1.21055 0.92869 0.90667 1.48056 0.93508 1.19063 0.93352 0.90324 0.86144 0.97754 1.22430 1.04900 0.97316 0.91545 1.22840 0.91717 1.02827 1.02401 1.22653 0.97688 1.01457 0.99327 1.64900 1.54008 1.02793 1.02479 1.23228 0.95872 0.93125 0.97653 1.22500 1.02840 0.95627 0.93152 1.22162 0.92506 0.95822 0.92432 0.94347 1.58725 1.50882 1.10169 1.17282 1.22406 0.98094 0.95375 0.90002 0.93157 0.88924 0.88521 0.89894 0.91691 0.88225 0.90009 0.95904 0.89547 0.89965 0.83521 0.84235 0.97454 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 12.63 21.44 0.27 -53.37 16 2 C 0.02 1.19 5.45 84.65 0.46 1.65 16 3 Si 0.94 44.25 29.54 68.60 2.03 46.28 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.49 -26.65 5.80 25.60 0.15 -26.50 16 8 H 0.05 2.65 7.22 -2.91 -0.02 2.63 16 9 C 0.22 11.02 1.87 44.17 0.08 11.10 16 10 H 0.00 0.27 6.77 -2.39 -0.02 0.26 16 11 C -0.14 -6.34 5.63 -10.79 -0.06 -6.40 16 12 C -0.16 -6.71 9.70 30.59 0.30 -6.41 16 13 C -0.17 -7.40 10.02 30.59 0.31 -7.09 16 14 N -0.52 -23.23 5.10 -862.22 -4.40 -27.62 16 15 C 0.03 1.08 5.52 86.65 0.48 1.56 16 16 C -0.10 -3.05 6.78 31.80 0.22 -2.84 16 17 C 0.08 2.68 4.12 45.79 0.19 2.87 16 18 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 19 N -0.84 -22.63 9.14 -165.03 -1.51 -24.14 16 20 C 0.07 3.04 5.76 86.44 0.50 3.54 16 21 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 22 H 0.09 3.71 6.43 -2.39 -0.02 3.69 16 23 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 24 H 0.08 3.86 6.15 -2.39 -0.01 3.85 16 25 H 0.06 3.23 8.14 -2.38 -0.02 3.21 16 26 H 0.10 3.54 8.14 -2.39 -0.02 3.53 16 27 H 0.08 2.77 7.19 -2.39 -0.02 2.75 16 28 H 0.02 0.87 8.02 -2.39 -0.02 0.85 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.42 8.06 -2.38 -0.02 2.41 16 31 H 0.35 7.27 9.08 -89.70 -0.81 6.45 16 32 H 0.34 8.76 8.99 -89.69 -0.81 7.95 16 33 H 0.01 0.36 7.65 -2.38 -0.02 0.34 16 34 H 0.06 2.60 7.91 -2.39 -0.02 2.58 16 Total: -1.00 -61.50 270.87 -1.52 -63.02 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.53 Total: 24.35 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 2.62 Total: -28.52 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -5.63 Total: -105.13 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -61.50 -1.52 -63.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.373 kcal (2) G-P(sol) polarization free energy of solvation -61.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds