Wall clock time and date at job start Mon Mar 30 2020 02:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47302 * 264.57413 * 3 2 1 5 5 H 1.48494 * 109.47288 * 24.57739 * 3 2 1 6 6 H 1.48505 * 109.46640 * 144.57439 * 3 2 1 7 7 C 1.37882 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00036 * 4.68918 * 7 2 1 9 9 C 1.50701 * 119.99705 * 184.69397 * 7 2 1 10 10 H 1.09007 * 109.47118 * 4.74417 * 9 7 2 11 11 C 1.52995 * 109.47153 * 124.74026 * 9 7 2 12 12 C 1.53004 * 117.49740 * 3.37147 * 11 9 7 13 13 C 1.53003 * 117.50176 * 294.74902 * 11 9 7 14 14 N 1.46897 * 109.46948 * 244.74461 * 9 7 2 15 15 C 1.47444 * 110.99896 * 309.87135 * 14 9 7 16 16 C 1.54318 * 107.23078 * 123.26196 * 15 14 9 17 17 C 1.55140 * 103.02172 * 22.28336 * 16 15 14 18 18 H 1.08999 * 110.98740 * 82.43807 * 17 16 15 19 19 N 1.46901 * 110.98987 * 206.25565 * 17 16 15 20 20 C 1.47846 * 111.00152 * 70.71587 * 14 9 7 21 21 H 0.97003 * 119.99825 * 359.97438 * 1 2 3 22 22 H 1.08998 * 115.55299 * 149.07515 * 11 9 7 23 23 H 1.08999 * 117.50174 * 359.97438 * 12 11 9 24 24 H 1.09006 * 117.49873 * 145.01772 * 12 11 9 25 25 H 1.08998 * 117.50108 * 214.97542 * 13 11 9 26 26 H 1.09003 * 117.49883 * 0.02562 * 13 11 9 27 27 H 1.08998 * 109.88966 * 242.66974 * 15 14 9 28 28 H 1.09002 * 109.88676 * 3.69255 * 15 14 9 29 29 H 1.09003 * 110.70697 * 140.66969 * 16 15 14 30 30 H 1.09001 * 110.70227 * 263.89665 * 16 15 14 31 31 H 1.00899 * 110.99998 * 298.54695 * 19 17 16 32 32 H 1.00904 * 111.00117 * 62.50097 * 19 17 16 33 33 H 1.08993 * 110.37428 * 332.46430 * 20 14 9 34 34 H 1.09003 * 110.36935 * 94.80865 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6114 1.9803 -1.3937 5 1 1.3941 2.6830 0.5823 6 1 3.4847 1.4759 0.8116 7 6 2.0046 -1.1941 -0.0005 8 1 1.4672 -2.1278 -0.0774 9 6 3.5078 -1.1964 0.1063 10 1 3.8627 -0.1771 0.2591 11 6 3.9337 -2.0675 1.2897 12 6 2.8336 -2.8039 2.0568 13 6 3.5339 -1.6003 2.6908 14 7 4.0858 -1.7357 -1.1318 15 6 3.4523 -3.0161 -1.4967 16 6 2.8836 -2.8549 -2.9222 17 6 3.7210 -1.6849 -3.5024 18 1 4.6800 -2.0404 -3.8791 19 7 2.9767 -0.9744 -4.5508 20 6 3.9131 -0.7884 -2.2538 21 1 -0.4850 0.8401 0.0004 22 1 4.8950 -2.5697 1.1819 23 1 1.8064 -2.6675 1.7187 24 1 3.0711 -3.7910 2.4537 25 1 4.2321 -1.7955 3.5047 26 1 2.9671 -0.6726 2.7694 27 1 4.1942 -3.8145 -1.4815 28 1 2.6478 -3.2443 -0.7975 29 1 3.0372 -3.7641 -3.5035 30 1 1.8263 -2.5923 -2.8879 31 1 2.7625 -1.5889 -5.3219 32 1 2.1377 -0.5558 -4.1782 33 1 3.0321 -0.1670 -2.0936 34 1 4.8017 -0.1670 -2.3658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:29 Heat of formation + Delta-G solvation = 34.119313 kcal Electronic energy + Delta-G solvation = -14908.923892 eV Core-core repulsion = 12649.401969 eV Total energy + Delta-G solvation = -2259.521923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.72885 -36.32597 -33.24436 -32.21626 -29.47535 -27.50867 -25.71711 -23.25702 -21.50188 -20.53865 -19.95529 -18.61618 -16.90892 -15.91530 -15.40001 -14.59266 -14.22500 -13.65532 -13.47511 -12.83991 -12.78383 -12.49083 -11.99467 -11.67984 -11.41118 -10.89644 -10.76572 -10.52858 -10.51180 -10.06594 -9.98238 -9.73525 -9.52253 -9.25189 -8.73185 -8.60171 -8.27227 -7.14732 -6.19837 -4.21503 3.21323 3.30010 3.32233 4.30308 4.69513 4.91122 5.07055 5.24565 5.39317 5.53587 5.70650 5.90239 6.00815 6.07116 6.15902 6.21329 6.35305 6.45808 6.55729 6.62596 6.72674 6.78762 6.86136 6.93430 6.96592 7.20739 7.35927 7.49638 7.60319 7.78245 8.00210 8.27105 8.44481 8.84292 9.43570 10.91774 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.016424 C = 0.012142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.920133 B = 1704.367814 C = 2305.510219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.864 3.136 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.080 0.920 9 C 0.183 3.817 10 H 0.053 0.947 11 C -0.126 4.126 12 C -0.174 4.174 13 C -0.183 4.183 14 N -0.528 5.528 15 C 0.057 3.943 16 C -0.168 4.168 17 C 0.083 3.917 18 H 0.083 0.917 19 N -0.843 5.843 20 C 0.050 3.950 21 H 0.264 0.736 22 H 0.084 0.916 23 H 0.114 0.886 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.334 0.666 32 H 0.344 0.656 33 H 0.061 0.939 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -3.290 -2.874 7.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.098 0.902 9 C 0.077 3.923 10 H 0.071 0.929 11 C -0.145 4.145 12 C -0.211 4.211 13 C -0.221 4.221 14 N -0.252 5.252 15 C -0.072 4.072 16 C -0.209 4.209 17 C -0.029 4.029 18 H 0.101 0.899 19 N -0.371 5.371 20 C -0.078 4.078 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.132 0.868 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.079 0.921 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.558 -2.771 -2.833 7.663 hybrid contribution -1.334 0.356 0.153 1.389 sum 5.225 -2.415 -2.680 6.349 Atomic orbital electron populations 1.69909 1.06225 1.27036 1.49942 1.25112 0.94647 0.98700 0.94050 0.87130 0.80347 0.84107 0.79243 1.19594 1.21680 1.18640 1.21453 0.90227 0.94401 1.50584 0.90193 1.19571 0.93472 0.93884 0.85415 0.92938 1.22278 0.97288 1.02465 0.92486 1.23034 1.00329 0.93670 1.04028 1.22698 1.03943 0.99781 0.95651 1.63986 1.54942 1.02730 1.03566 1.22452 0.97290 0.92823 0.94640 1.23484 1.00569 0.98690 0.98146 1.22578 0.96454 0.92557 0.91292 0.89855 1.58853 1.29141 1.37652 1.11477 1.22851 1.00640 0.95338 0.88975 0.92600 0.89771 0.86759 0.91499 0.90810 0.89308 0.93245 0.90955 0.92678 0.91370 0.85428 0.84321 0.92115 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 2 C 0.08 2.11 5.26 -17.81 -0.09 2.01 16 3 Si 0.86 20.87 25.64 -169.99 -4.36 16.51 16 4 H -0.27 -6.45 7.01 56.52 0.40 -6.05 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.26 -6.18 6.21 56.52 0.35 -5.83 16 7 C -0.53 -13.44 5.28 -34.44 -0.18 -13.62 16 8 H 0.08 2.23 5.73 -52.49 -0.30 1.93 16 9 C 0.18 4.18 2.01 -68.87 -0.14 4.04 16 10 H 0.05 1.28 4.41 -51.93 -0.23 1.05 16 11 C -0.13 -2.62 5.29 -90.62 -0.48 -3.10 16 12 C -0.17 -3.49 9.62 -26.73 -0.26 -3.75 16 13 C -0.18 -3.61 10.12 -26.73 -0.27 -3.88 16 14 N -0.53 -11.08 5.13 -224.68 -1.15 -12.23 16 15 C 0.06 1.10 5.89 -2.84 -0.02 1.08 16 16 C -0.17 -2.96 6.63 -24.91 -0.17 -3.12 16 17 C 0.08 1.44 4.21 -65.57 -0.28 1.17 16 18 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 19 N -0.84 -13.37 9.42 -2.86 -0.03 -13.40 16 20 C 0.05 1.03 6.08 -2.30 -0.01 1.02 16 21 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 23 H 0.11 2.62 5.97 -51.93 -0.31 2.31 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 26 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.56 5.44 -51.93 -0.28 1.28 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.33 4.43 9.07 -39.29 -0.36 4.07 16 32 H 0.34 5.80 8.83 -39.29 -0.35 5.45 16 33 H 0.06 1.40 4.81 -51.93 -0.25 1.15 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 260.72 15.07 3.93 3.93 Total: -1.00 -27.03 260.72 -7.80 -34.83 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.07 Total: 13.46 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -1.89 Total: -18.15 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.40 Total: -50.59 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.36 Total: 16.51 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.03 -7.80 -34.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.951 kcal (2) G-P(sol) polarization free energy of solvation -27.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds