Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48496 * 109.47302 * 264.57413 * 3 2 1 5 5 H 1.48494 * 109.47288 * 24.57739 * 3 2 1 6 6 H 1.48505 * 109.46640 * 144.57439 * 3 2 1 7 7 C 1.37882 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00036 * 4.68918 * 7 2 1 9 9 C 1.50701 * 119.99705 * 184.69397 * 7 2 1 10 10 H 1.09007 * 109.47118 * 4.74417 * 9 7 2 11 11 C 1.52995 * 109.47153 * 124.74026 * 9 7 2 12 12 C 1.53004 * 117.49740 * 3.37147 * 11 9 7 13 13 C 1.53003 * 117.50176 * 294.74902 * 11 9 7 14 14 N 1.46897 * 109.46948 * 244.74461 * 9 7 2 15 15 C 1.47444 * 110.99896 * 309.87135 * 14 9 7 16 16 C 1.54318 * 107.23078 * 123.26196 * 15 14 9 17 17 C 1.55140 * 103.02172 * 22.28336 * 16 15 14 18 18 H 1.08999 * 110.98740 * 82.43807 * 17 16 15 19 19 N 1.46901 * 110.98987 * 206.25565 * 17 16 15 20 20 C 1.47846 * 111.00152 * 70.71587 * 14 9 7 21 21 H 0.97003 * 119.99825 * 359.97438 * 1 2 3 22 22 H 1.08998 * 115.55299 * 149.07515 * 11 9 7 23 23 H 1.08999 * 117.50174 * 359.97438 * 12 11 9 24 24 H 1.09006 * 117.49873 * 145.01772 * 12 11 9 25 25 H 1.08998 * 117.50108 * 214.97542 * 13 11 9 26 26 H 1.09003 * 117.49883 * 0.02562 * 13 11 9 27 27 H 1.08998 * 109.88966 * 242.66974 * 15 14 9 28 28 H 1.09002 * 109.88676 * 3.69255 * 15 14 9 29 29 H 1.09003 * 110.70697 * 140.66969 * 16 15 14 30 30 H 1.09001 * 110.70227 * 263.89665 * 16 15 14 31 31 H 1.00899 * 110.99998 * 298.54695 * 19 17 16 32 32 H 1.00904 * 111.00117 * 62.50097 * 19 17 16 33 33 H 1.08993 * 110.37428 * 332.46430 * 20 14 9 34 34 H 1.09003 * 110.36935 * 94.80865 * 20 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6114 1.9803 -1.3937 5 1 1.3941 2.6830 0.5823 6 1 3.4847 1.4759 0.8116 7 6 2.0046 -1.1941 -0.0005 8 1 1.4672 -2.1278 -0.0774 9 6 3.5078 -1.1964 0.1063 10 1 3.8627 -0.1771 0.2591 11 6 3.9337 -2.0675 1.2897 12 6 2.8336 -2.8039 2.0568 13 6 3.5339 -1.6003 2.6908 14 7 4.0858 -1.7357 -1.1318 15 6 3.4523 -3.0161 -1.4967 16 6 2.8836 -2.8549 -2.9222 17 6 3.7210 -1.6849 -3.5024 18 1 4.6800 -2.0404 -3.8791 19 7 2.9767 -0.9744 -4.5508 20 6 3.9131 -0.7884 -2.2538 21 1 -0.4850 0.8401 0.0004 22 1 4.8950 -2.5697 1.1819 23 1 1.8064 -2.6675 1.7187 24 1 3.0711 -3.7910 2.4537 25 1 4.2321 -1.7955 3.5047 26 1 2.9671 -0.6726 2.7694 27 1 4.1942 -3.8145 -1.4815 28 1 2.6478 -3.2443 -0.7975 29 1 3.0372 -3.7641 -3.5035 30 1 1.8263 -2.5923 -2.8879 31 1 2.7625 -1.5889 -5.3219 32 1 2.1377 -0.5558 -4.1782 33 1 3.0321 -0.1670 -2.0936 34 1 4.8017 -0.1670 -2.3658 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = 13.803582 kcal Electronic energy + Delta-G solvation = -14909.804848 eV Core-core repulsion = 12649.401969 eV Total energy + Delta-G solvation = -2260.402879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.36590 -37.92040 -34.89311 -34.10714 -31.07250 -29.18487 -27.46071 -25.03573 -23.11587 -22.10603 -21.46655 -20.44945 -18.81605 -17.38584 -17.03580 -16.42916 -15.85615 -15.29809 -15.09477 -14.55409 -14.42872 -14.23052 -13.70207 -13.30931 -13.06718 -12.73975 -12.45548 -12.20361 -12.03874 -11.80212 -11.61716 -11.54045 -11.35395 -10.91443 -10.74864 -10.36641 -9.59885 -8.90103 -8.30365 -6.32386 1.26799 1.31148 1.36239 2.28135 2.99169 3.16137 3.40861 3.70290 3.88302 4.07632 4.23516 4.31378 4.37601 4.51982 4.60734 4.71216 4.87392 4.89310 4.92892 4.98596 5.01480 5.18897 5.22729 5.27752 5.41620 5.54408 5.61311 5.71341 6.09647 6.21153 6.44119 6.52863 6.59564 6.77155 7.34741 8.84498 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.016424 C = 0.012142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.920133 B = 1704.367814 C = 2305.510219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.030 3.970 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.251 1.251 7 C -0.502 4.502 8 H 0.047 0.953 9 C 0.184 3.816 10 H 0.040 0.960 11 C -0.133 4.133 12 C -0.171 4.171 13 C -0.175 4.175 14 N -0.523 5.523 15 C 0.055 3.945 16 C -0.161 4.161 17 C 0.095 3.905 18 H 0.104 0.896 19 N -0.841 5.841 20 C 0.042 3.958 21 H 0.262 0.738 22 H 0.104 0.896 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.351 0.649 32 H 0.337 0.663 33 H 0.031 0.969 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -4.003 -3.297 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.176 1.176 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.077 3.923 10 H 0.058 0.942 11 C -0.152 4.152 12 C -0.208 4.208 13 C -0.213 4.213 14 N -0.247 5.247 15 C -0.073 4.073 16 C -0.201 4.201 17 C -0.017 4.017 18 H 0.122 0.878 19 N -0.370 5.370 20 C -0.086 4.086 21 H 0.071 0.929 22 H 0.122 0.878 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.128 0.872 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.165 0.835 32 H 0.149 0.851 33 H 0.049 0.951 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.820 -3.499 -3.275 10.038 hybrid contribution -2.033 0.487 0.268 2.107 sum 6.787 -3.013 -3.006 8.011 Atomic orbital electron populations 1.70032 1.07750 1.27502 1.52769 1.25710 0.95071 1.01586 0.94510 0.86333 0.79479 0.80789 0.79472 1.19056 1.22150 1.17571 1.21501 0.91703 0.92707 1.48188 0.93470 1.19504 0.91354 0.94078 0.87393 0.94242 1.22254 0.98188 1.02730 0.92047 1.22899 0.98174 0.95497 1.04188 1.22769 1.03901 0.98459 0.96157 1.64008 1.54342 1.03252 1.03108 1.22497 0.97085 0.92642 0.95114 1.23418 0.98859 1.00344 0.97480 1.22502 0.97378 0.91412 0.90433 0.87788 1.58830 1.28769 1.37903 1.11502 1.22938 0.99558 0.95626 0.90492 0.92871 0.87791 0.90469 0.88450 0.87177 0.91599 0.90850 0.93751 0.89500 0.94046 0.83474 0.85120 0.95117 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.21 13.96 21.45 0.30 -55.91 16 2 C 0.03 1.65 5.26 84.65 0.45 2.10 16 3 Si 0.91 43.66 25.64 68.60 1.76 45.42 16 4 H -0.27 -12.36 7.01 99.48 0.70 -11.67 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.25 -11.49 6.21 99.48 0.62 -10.87 16 7 C -0.50 -26.18 5.28 25.60 0.14 -26.04 16 8 H 0.05 2.76 5.73 -2.91 -0.02 2.74 16 9 C 0.18 8.30 2.01 44.17 0.09 8.39 16 10 H 0.04 1.90 4.41 -2.38 -0.01 1.88 16 11 C -0.13 -5.30 5.29 -10.79 -0.06 -5.36 16 12 C -0.17 -6.68 9.62 30.60 0.29 -6.38 16 13 C -0.18 -6.59 10.12 30.60 0.31 -6.28 16 14 N -0.52 -21.17 5.13 -864.75 -4.43 -25.60 16 15 C 0.06 2.06 5.89 86.65 0.51 2.57 16 16 C -0.16 -5.35 6.63 31.77 0.21 -5.14 16 17 C 0.10 3.06 4.21 46.30 0.19 3.26 16 18 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 19 N -0.84 -25.04 9.42 -162.96 -1.53 -26.57 16 20 C 0.04 1.68 6.08 86.77 0.53 2.20 16 21 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 22 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 23 H 0.08 3.63 5.97 -2.39 -0.01 3.61 16 24 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 25 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.92 5.44 -2.39 -0.01 1.91 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.35 8.42 9.07 -89.69 -0.81 7.60 16 32 H 0.34 11.11 8.83 -89.69 -0.79 10.32 16 33 H 0.03 1.40 4.81 -2.39 -0.01 1.39 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -58.96 260.72 -1.84 -60.81 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.60 Total: 32.54 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 2.66 Total: -30.68 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -5.67 Total: -108.08 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.76 Total: 45.42 kcal Total: -58.96 -1.84 -60.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.611 kcal (2) G-P(sol) polarization free energy of solvation -58.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds