Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00147 * 2 1 4 4 H 1.48503 * 109.47067 * 264.28685 * 3 2 1 5 5 H 1.48498 * 109.46736 * 24.28479 * 3 2 1 6 6 H 1.48499 * 109.47115 * 144.28868 * 3 2 1 7 7 C 1.37875 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99787 * 354.98420 * 7 2 1 9 9 C 1.50700 * 120.00451 * 174.97942 * 7 2 1 10 10 N 1.46903 * 110.01348 * 304.60426 * 9 7 2 11 11 C 1.54964 * 110.11905 * 183.16107 * 9 7 2 12 12 C 1.51794 * 106.94433 * 167.00072 * 11 9 7 13 13 N 1.44039 * 112.23288 * 60.67606 * 12 11 9 14 14 C 1.43708 * 117.83602 * 270.06016 * 13 12 11 15 15 C 1.52471 * 111.71046 * 85.90691 * 14 13 12 16 16 C 1.52215 * 111.70524 * 345.62979 * 15 14 13 17 17 C 1.52362 * 111.54886 * 56.89426 * 16 15 14 18 18 C 1.46955 * 113.07811 * 42.60019 * 13 12 11 19 19 H 0.96997 * 120.00008 * 359.97438 * 1 2 3 20 20 H 1.00894 * 110.99491 * 299.77612 * 10 9 7 21 21 H 1.00897 * 110.99941 * 63.72463 * 10 9 7 22 22 H 1.09003 * 109.96078 * 286.32980 * 11 9 7 23 23 H 1.09000 * 109.96242 * 47.53068 * 11 9 7 24 24 H 1.08995 * 108.95737 * 299.94188 * 12 11 9 25 25 H 1.09005 * 108.89230 * 181.36368 * 12 11 9 26 26 H 1.09003 * 109.03531 * 325.33441 * 14 13 12 27 27 H 1.08997 * 108.97878 * 206.44502 * 14 13 12 28 28 H 1.09002 * 109.02323 * 106.17820 * 15 14 13 29 29 H 1.08996 * 109.02074 * 225.07881 * 15 14 13 30 30 H 1.09000 * 108.92389 * 177.01320 * 16 15 14 31 31 H 1.08999 * 109.13862 * 203.60803 * 17 16 15 32 32 H 1.09002 * 109.11267 * 84.44641 * 17 16 15 33 33 H 1.09002 * 109.35255 * 53.53440 * 18 13 12 34 34 H 1.08998 * 109.35658 * 173.10398 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6174 1.9768 -1.3931 5 1 1.3914 2.6845 0.5758 6 1 3.4811 1.4780 0.8172 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1275 0.0827 9 6 3.5072 -1.1966 -0.1137 10 7 3.9211 -0.4646 -1.3182 11 6 4.0349 -2.6525 -0.1698 12 6 5.4868 -2.5803 -0.6069 13 7 6.2967 -1.8264 0.3153 14 6 6.4242 -0.4120 0.0952 15 6 5.2798 0.3641 0.7376 16 6 4.1309 -0.5522 1.1342 17 6 4.5948 -1.6550 2.0776 18 6 6.0002 -2.1287 1.7226 19 1 -0.4850 0.8400 0.0004 20 1 3.5405 -0.8915 -2.1493 21 1 3.6585 0.5078 -1.2585 22 1 3.9662 -3.1115 0.8165 23 1 3.4561 -3.2307 -0.8901 24 1 5.5380 -2.1099 -1.5888 25 1 5.8840 -3.5927 -0.6805 26 1 6.4273 -0.2180 -0.9774 27 1 7.3680 -0.0708 0.5206 28 1 5.6511 0.8736 1.6268 29 1 4.9132 1.1074 0.0296 30 1 3.3639 0.0388 1.6347 31 1 3.9061 -2.4971 2.0090 32 1 4.5934 -1.2748 3.0991 33 1 6.0701 -3.2045 1.8834 34 1 6.7240 -1.6223 2.3611 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = 47.765317 kcal Electronic energy + Delta-G solvation = -15732.025678 eV Core-core repulsion = 13473.095491 eV Total energy + Delta-G solvation = -2258.930188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42756 -34.82471 -32.25207 -31.84816 -31.21831 -28.42033 -25.91357 -24.14573 -22.78975 -22.08448 -18.69673 -17.63216 -16.83450 -16.48871 -15.40492 -14.72935 -14.45115 -13.87228 -12.99531 -12.82748 -12.60296 -12.31681 -12.23849 -11.65189 -11.59331 -11.22717 -10.98407 -10.62372 -10.40901 -10.12255 -9.82823 -9.69563 -9.45861 -9.25683 -8.84647 -8.53117 -7.45756 -7.30991 -6.20075 -4.21533 3.12264 3.27087 3.31982 4.27281 4.69287 5.09062 5.36438 5.48724 5.72046 5.73956 5.84659 5.90535 5.99994 6.11117 6.15518 6.21596 6.30546 6.42157 6.56635 6.60954 6.69534 6.78184 6.82418 6.92614 7.11118 7.16422 7.38183 7.64216 7.92446 8.11034 8.17160 8.39481 8.60396 8.85478 9.42146 10.92433 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041294 B = 0.015689 C = 0.014408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.907305 B = 1784.219895 C = 1942.873312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.837 3.163 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.211 1.211 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.211 3.789 10 N -0.840 5.840 11 C -0.146 4.146 12 C 0.091 3.909 13 N -0.566 5.566 14 C 0.098 3.902 15 C -0.133 4.133 16 C -0.083 4.083 17 C -0.149 4.149 18 C 0.074 3.926 19 H 0.264 0.736 20 H 0.329 0.671 21 H 0.316 0.684 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.036 0.964 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.906 -1.226 1.180 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.666 3.334 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.134 1.134 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.120 3.880 10 N -0.374 5.374 11 C -0.185 4.185 12 C -0.037 4.037 13 N -0.287 5.287 14 C -0.030 4.030 15 C -0.172 4.172 16 C -0.102 4.102 17 C -0.187 4.187 18 C -0.054 4.054 19 H 0.073 0.927 20 H 0.140 0.860 21 H 0.133 0.867 22 H 0.094 0.906 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.895 -1.452 1.301 12.054 hybrid contribution -1.862 1.551 0.015 2.423 sum 10.033 0.098 1.315 10.119 Atomic orbital electron populations 1.69912 1.06388 1.27014 1.49915 1.25041 0.94697 0.99093 0.94277 0.88085 0.82383 0.83763 0.79177 1.20871 1.22783 1.13440 1.21649 0.90351 0.94539 1.51196 0.91049 1.19200 0.92466 0.89971 0.86382 1.59821 1.66167 1.05640 1.05776 1.22747 0.96133 0.97984 1.01614 1.21024 0.90820 0.95841 0.96002 1.57623 1.56973 1.10636 1.03513 1.21029 0.95355 0.85699 1.00918 1.21898 0.97093 0.98948 0.99266 1.21433 0.95874 0.95622 0.97314 1.22238 0.98045 1.00076 0.98385 1.21736 0.95066 0.99734 0.88904 0.92654 0.85984 0.86714 0.90567 0.92814 0.90600 0.93768 0.90892 0.93443 0.94540 0.91966 0.91386 0.90212 0.93666 0.91976 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 2.01 5.38 -17.82 -0.10 1.91 16 3 Si 0.84 19.99 22.57 -169.99 -3.84 16.15 16 4 H -0.28 -6.60 6.64 56.52 0.38 -6.22 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.21 -4.62 2.93 56.52 0.17 -4.45 16 7 C -0.54 -14.53 8.72 -34.44 -0.30 -14.83 16 8 H 0.07 2.15 8.01 -52.48 -0.42 1.72 16 9 C 0.21 4.64 0.47 -131.37 -0.06 4.58 16 10 N -0.84 -17.49 5.16 0.93 0.00 -17.49 16 11 C -0.15 -2.86 4.91 -26.31 -0.13 -2.99 16 12 C 0.09 1.58 5.50 -5.96 -0.03 1.55 16 13 N -0.57 -9.65 4.35 -241.02 -1.05 -10.70 16 14 C 0.10 1.68 5.46 -5.79 -0.03 1.65 16 15 C -0.13 -2.50 3.85 -27.40 -0.11 -2.61 16 16 C -0.08 -1.72 1.66 -91.00 -0.15 -1.87 16 17 C -0.15 -2.72 5.24 -27.31 -0.14 -2.86 16 18 C 0.07 1.19 5.46 -4.05 -0.02 1.16 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H 0.33 6.76 9.02 -39.30 -0.35 6.41 16 21 H 0.32 6.89 3.12 -39.29 -0.12 6.76 16 22 H 0.08 1.48 4.43 -51.93 -0.23 1.25 16 23 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 24 H 0.08 1.35 6.64 -51.93 -0.34 1.00 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.27 7.24 -51.93 -0.38 0.89 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.23 4.68 -51.93 -0.24 0.99 16 30 H 0.07 1.59 4.97 -51.93 -0.26 1.33 16 31 H 0.08 1.53 5.41 -51.93 -0.28 1.25 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 LS Contribution 228.12 15.07 3.44 3.44 Total: -1.00 -28.63 228.12 -6.73 -35.36 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -4.98 Total: 13.88 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.07 Total: -14.32 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.27 Total: -54.51 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -3.84 Total: 16.15 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -28.63 -6.73 -35.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.122 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds