Wall clock time and date at job start Mon Mar 30 2020 02:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00147 * 2 1 4 4 H 1.48503 * 109.47067 * 264.28685 * 3 2 1 5 5 H 1.48498 * 109.46736 * 24.28479 * 3 2 1 6 6 H 1.48499 * 109.47115 * 144.28868 * 3 2 1 7 7 C 1.37875 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99787 * 354.98420 * 7 2 1 9 9 C 1.50700 * 120.00451 * 174.97942 * 7 2 1 10 10 N 1.46903 * 110.01348 * 304.60426 * 9 7 2 11 11 C 1.54964 * 110.11905 * 183.16107 * 9 7 2 12 12 C 1.51794 * 106.94433 * 167.00072 * 11 9 7 13 13 N 1.44039 * 112.23288 * 60.67606 * 12 11 9 14 14 C 1.43708 * 117.83602 * 270.06016 * 13 12 11 15 15 C 1.52471 * 111.71046 * 85.90691 * 14 13 12 16 16 C 1.52215 * 111.70524 * 345.62979 * 15 14 13 17 17 C 1.52362 * 111.54886 * 56.89426 * 16 15 14 18 18 C 1.46955 * 113.07811 * 42.60019 * 13 12 11 19 19 H 0.96997 * 120.00008 * 359.97438 * 1 2 3 20 20 H 1.00894 * 110.99491 * 299.77612 * 10 9 7 21 21 H 1.00897 * 110.99941 * 63.72463 * 10 9 7 22 22 H 1.09003 * 109.96078 * 286.32980 * 11 9 7 23 23 H 1.09000 * 109.96242 * 47.53068 * 11 9 7 24 24 H 1.08995 * 108.95737 * 299.94188 * 12 11 9 25 25 H 1.09005 * 108.89230 * 181.36368 * 12 11 9 26 26 H 1.09003 * 109.03531 * 325.33441 * 14 13 12 27 27 H 1.08997 * 108.97878 * 206.44502 * 14 13 12 28 28 H 1.09002 * 109.02323 * 106.17820 * 15 14 13 29 29 H 1.08996 * 109.02074 * 225.07881 * 15 14 13 30 30 H 1.09000 * 108.92389 * 177.01320 * 16 15 14 31 31 H 1.08999 * 109.13862 * 203.60803 * 17 16 15 32 32 H 1.09002 * 109.11267 * 84.44641 * 17 16 15 33 33 H 1.09002 * 109.35255 * 53.53440 * 18 13 12 34 34 H 1.08998 * 109.35658 * 173.10398 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6174 1.9768 -1.3931 5 1 1.3914 2.6845 0.5758 6 1 3.4811 1.4780 0.8172 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1275 0.0827 9 6 3.5072 -1.1966 -0.1137 10 7 3.9211 -0.4646 -1.3182 11 6 4.0349 -2.6525 -0.1698 12 6 5.4868 -2.5803 -0.6069 13 7 6.2967 -1.8264 0.3153 14 6 6.4242 -0.4120 0.0952 15 6 5.2798 0.3641 0.7376 16 6 4.1309 -0.5522 1.1342 17 6 4.5948 -1.6550 2.0776 18 6 6.0002 -2.1287 1.7226 19 1 -0.4850 0.8400 0.0004 20 1 3.5405 -0.8915 -2.1493 21 1 3.6585 0.5078 -1.2585 22 1 3.9662 -3.1115 0.8165 23 1 3.4561 -3.2307 -0.8901 24 1 5.5380 -2.1099 -1.5888 25 1 5.8840 -3.5927 -0.6805 26 1 6.4273 -0.2180 -0.9774 27 1 7.3680 -0.0708 0.5206 28 1 5.6511 0.8736 1.6268 29 1 4.9132 1.1074 0.0296 30 1 3.3639 0.0388 1.6347 31 1 3.9061 -2.4971 2.0090 32 1 4.5934 -1.2748 3.0991 33 1 6.0701 -3.2045 1.8834 34 1 6.7240 -1.6223 2.3611 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269202.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:16 Heat of formation + Delta-G solvation = 25.649424 kcal Electronic energy + Delta-G solvation = -15732.984695 eV Core-core repulsion = 13473.095491 eV Total energy + Delta-G solvation = -2259.889205 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.93748 -36.53002 -33.95174 -33.72448 -32.66665 -29.94173 -27.89739 -25.62589 -24.34436 -23.64373 -20.25201 -19.39889 -18.46841 -18.21212 -17.10773 -16.28488 -16.07069 -15.60015 -14.91152 -14.38210 -14.16049 -13.91446 -13.72005 -13.14857 -13.13499 -12.85507 -12.80404 -12.29578 -12.07333 -11.74779 -11.49366 -11.28449 -11.15047 -10.86171 -10.68274 -10.37649 -9.25887 -8.70354 -8.39524 -6.44860 1.18562 1.32303 1.37814 2.22849 2.95563 3.35968 3.85651 4.02462 4.07711 4.24125 4.46091 4.49643 4.58113 4.65084 4.65856 4.74982 4.88058 5.04276 5.10726 5.17434 5.23365 5.32096 5.39993 5.46559 5.48141 5.56424 5.65238 5.82227 6.04059 6.54421 6.57794 6.66148 6.75598 6.81904 7.23335 8.76264 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.041294 B = 0.015689 C = 0.014408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.907305 B = 1784.219895 C = 1942.873312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.013 3.987 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.316 1.316 6 H -0.175 1.175 7 C -0.537 4.537 8 H 0.023 0.977 9 C 0.209 3.791 10 N -0.822 5.822 11 C -0.143 4.143 12 C 0.098 3.902 13 N -0.563 5.563 14 C 0.100 3.900 15 C -0.133 4.133 16 C -0.085 4.085 17 C -0.148 4.148 18 C 0.077 3.923 19 H 0.262 0.738 20 H 0.329 0.671 21 H 0.312 0.688 22 H 0.078 0.922 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.256 -0.752 1.502 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.184 4.184 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.245 1.245 6 H -0.097 1.097 7 C -0.577 4.577 8 H 0.041 0.959 9 C 0.118 3.882 10 N -0.355 5.355 11 C -0.182 4.182 12 C -0.030 4.030 13 N -0.284 5.284 14 C -0.029 4.029 15 C -0.173 4.173 16 C -0.105 4.105 17 C -0.187 4.187 18 C -0.050 4.050 19 H 0.071 0.929 20 H 0.141 0.859 21 H 0.128 0.872 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.282 -1.002 1.616 15.400 hybrid contribution -3.004 1.291 -0.076 3.270 sum 12.278 0.290 1.539 12.378 Atomic orbital electron populations 1.70090 1.08533 1.27815 1.52467 1.25899 0.95316 1.03151 0.94045 0.87179 0.82041 0.78222 0.80180 1.19623 1.24470 1.09738 1.22017 0.93358 0.92503 1.49806 0.95905 1.19181 0.89208 0.92173 0.87680 1.59843 1.65245 1.05144 1.05249 1.22732 0.97906 0.96000 1.01574 1.20970 0.88919 0.97180 0.95914 1.57726 1.56190 1.10581 1.03854 1.21087 0.95555 0.85375 1.00853 1.21905 0.96854 0.98527 0.99982 1.21349 0.96089 0.96565 0.96505 1.22223 0.99330 0.98644 0.98495 1.21804 0.93678 1.01022 0.88546 0.92933 0.85932 0.87166 0.90363 0.94261 0.90856 0.91721 0.91142 0.90846 0.92793 0.92832 0.94384 0.91878 0.92408 0.90411 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.01 0.77 5.38 84.66 0.46 1.22 16 3 Si 0.90 41.67 22.57 68.60 1.55 43.21 16 4 H -0.27 -11.93 6.64 99.48 0.66 -11.26 16 5 H -0.32 -15.46 7.11 99.48 0.71 -14.75 16 6 H -0.18 -7.16 2.93 99.48 0.29 -6.87 16 7 C -0.54 -29.94 8.72 25.60 0.22 -29.72 16 8 H 0.02 1.45 8.01 -2.91 -0.02 1.42 16 9 C 0.21 9.05 0.47 3.68 0.00 9.05 16 10 N -0.82 -32.84 5.16 -150.96 -0.78 -33.62 16 11 C -0.14 -5.47 4.91 30.87 0.15 -5.32 16 12 C 0.10 3.11 5.50 86.44 0.48 3.59 16 13 N -0.56 -16.72 4.35 -916.46 -3.99 -20.71 16 14 C 0.10 2.94 5.46 86.72 0.47 3.42 16 15 C -0.13 -4.50 3.85 30.16 0.12 -4.39 16 16 C -0.09 -3.37 1.66 -11.04 -0.02 -3.39 16 17 C -0.15 -5.03 5.24 30.22 0.16 -4.87 16 18 C 0.08 2.15 5.46 86.13 0.47 2.62 16 19 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 20 H 0.33 13.20 9.02 -89.70 -0.81 12.39 16 21 H 0.31 12.93 3.12 -89.70 -0.28 12.65 16 22 H 0.08 2.97 4.43 -2.39 -0.01 2.96 16 23 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 24 H 0.07 2.38 6.64 -2.39 -0.02 2.36 16 25 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.07 2.14 7.24 -2.39 -0.02 2.12 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.90 4.68 -2.39 -0.01 1.89 16 30 H 0.04 1.72 4.97 -2.39 -0.01 1.71 16 31 H 0.06 2.34 5.41 -2.39 -0.01 2.33 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 Total: -1.00 -63.27 228.12 -0.86 -64.13 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.44 Total: 34.41 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 2.51 Total: -27.78 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.47 Total: -113.97 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.55 Total: 43.21 kcal Total: -63.27 -0.86 -64.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269202.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.778 kcal (2) G-P(sol) polarization free energy of solvation -63.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds