Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00340 * 2 1 4 4 H 1.48504 * 109.47507 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.47162 * 29.99724 * 3 2 1 6 6 H 1.48497 * 109.47626 * 149.99871 * 3 2 1 7 7 C 1.37881 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46898 * 110.01721 * 36.66045 * 9 7 2 11 11 C 1.54973 * 110.03251 * 158.16327 * 9 7 2 12 12 C 1.52044 * 106.91954 * 45.54272 * 11 9 7 13 13 N 1.44049 * 112.24079 * 60.68296 * 12 11 9 14 14 C 1.46948 * 113.07139 * 42.63607 * 13 12 11 15 15 C 1.52492 * 110.17213 * 293.36451 * 14 13 12 16 16 C 1.52515 * 111.22158 * 336.85038 * 15 14 13 17 17 C 1.52221 * 111.45674 * 324.10686 * 16 15 14 18 18 C 1.43719 * 117.82419 * 270.11804 * 13 12 11 19 19 H 0.97003 * 119.99391 * 0.02562 * 1 2 3 20 20 H 1.00893 * 111.00084 * 58.60608 * 10 9 7 21 21 H 1.00904 * 111.00231 * 182.56400 * 10 9 7 22 22 H 1.09007 * 109.96143 * 164.89280 * 11 9 7 23 23 H 1.08999 * 109.96148 * 286.09876 * 11 9 7 24 24 H 1.09003 * 108.93255 * 299.97321 * 12 11 9 25 25 H 1.09000 * 108.92907 * 181.39206 * 12 11 9 26 26 H 1.09000 * 109.35311 * 53.58286 * 14 13 12 27 27 H 1.09007 * 109.35431 * 173.14960 * 14 13 12 28 28 H 1.09002 * 109.12881 * 216.39698 * 15 14 13 29 29 H 1.09004 * 109.13066 * 97.29546 * 15 14 13 30 30 H 1.08997 * 108.90726 * 203.91998 * 16 15 14 31 31 H 1.09004 * 109.02018 * 296.27918 * 17 16 15 32 32 H 1.08999 * 109.01930 * 177.45865 * 17 16 15 33 33 H 1.08997 * 109.03299 * 206.46456 * 18 13 12 34 34 H 1.09006 * 109.03530 * 325.32184 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 0.0410 -2.3804 -0.8262 11 6 2.1561 -3.6344 -0.5437 12 6 3.5078 -3.4853 0.1363 13 7 3.4142 -3.6077 1.5685 14 6 2.5290 -4.6998 1.9964 15 6 1.0867 -4.3896 1.6106 16 6 0.8725 -2.8898 1.4354 17 6 1.6953 -2.0893 2.4350 18 6 3.1819 -2.4113 2.3303 19 1 -0.4849 0.8401 -0.0004 20 1 0.2730 -2.1241 -1.7740 21 1 -0.4971 -3.2337 -0.8037 22 1 1.7222 -4.6044 -0.3006 23 1 2.2684 -3.5373 -1.6235 24 1 3.9209 -2.5067 -0.1086 25 1 4.1804 -4.2556 -0.2411 26 1 2.8404 -5.6269 1.5150 27 1 2.5965 -4.8167 3.0781 28 1 0.4211 -4.7567 2.3919 29 1 0.8505 -4.8959 0.6746 30 1 -0.1832 -2.6639 1.5854 31 1 1.3520 -2.3202 3.4435 32 1 1.5479 -1.0260 2.2458 33 1 3.5884 -2.5438 3.3329 34 1 3.6930 -1.5780 1.8481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = 40.264853 kcal Electronic energy + Delta-G solvation = -15711.190521 eV Core-core repulsion = 13451.935089 eV Total energy + Delta-G solvation = -2259.255432 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.15478 -34.35437 -31.90628 -31.81675 -30.18637 -28.59985 -25.12278 -23.76279 -22.51987 -22.08302 -18.99269 -17.22058 -16.50584 -15.39837 -14.87468 -14.52777 -14.17784 -13.55622 -12.92200 -12.46127 -12.33534 -12.01964 -11.76118 -11.60792 -11.26060 -11.23957 -10.80416 -10.55162 -10.21316 -10.02694 -9.59890 -9.51457 -9.21622 -9.00959 -8.48856 -8.32504 -7.21843 -6.73138 -5.64123 -3.87027 3.33496 3.41804 3.44439 4.51080 4.87315 5.40700 5.54302 5.67452 5.88007 6.03159 6.11400 6.15858 6.22286 6.31546 6.36901 6.41830 6.51106 6.65122 6.75543 6.84125 6.88456 7.00178 7.04501 7.18058 7.47015 7.54045 7.78032 8.00132 8.11730 8.36436 8.39560 8.69964 9.16766 9.35108 9.74940 11.24961 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037077 B = 0.015424 C = 0.013859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.000964 B = 1814.932324 C = 2019.829379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.083 3.917 3 Si 0.863 3.137 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.256 3.744 10 N -0.788 5.788 11 C -0.200 4.200 12 C 0.092 3.908 13 N -0.567 5.567 14 C 0.077 3.923 15 C -0.158 4.158 16 C -0.066 4.066 17 C -0.113 4.113 18 C 0.093 3.907 19 H 0.247 0.753 20 H 0.321 0.679 21 H 0.288 0.712 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.020 0.980 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -6.278 1.983 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.124 4.124 3 Si 0.691 3.309 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.313 5.313 11 C -0.241 4.241 12 C -0.037 4.037 13 N -0.288 5.288 14 C -0.051 4.051 15 C -0.197 4.197 16 C -0.086 4.086 17 C -0.152 4.152 18 C -0.035 4.035 19 H 0.057 0.943 20 H 0.132 0.868 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.120 -5.634 2.593 6.943 hybrid contribution 0.045 0.407 -0.836 0.931 sum 3.166 -5.228 1.757 6.359 Atomic orbital electron populations 1.70341 1.05012 1.24156 1.46031 1.24981 0.94541 0.97791 0.95051 0.87099 0.80367 0.85524 0.77953 1.21043 1.21508 1.20019 1.20948 0.92118 0.89546 1.54191 0.92075 1.18926 0.85337 0.91095 0.88243 1.58861 1.23095 1.34725 1.14571 1.23803 0.99770 1.01458 0.99100 1.21083 0.95931 1.01283 0.85367 1.57662 1.54699 1.08769 1.07707 1.21650 0.90685 0.93644 0.99140 1.22433 0.97417 0.99592 1.00228 1.20959 0.99417 0.90248 0.97976 1.21536 0.95357 1.03022 0.95311 1.21091 0.95925 0.90932 0.95538 0.94266 0.86761 0.90230 0.92378 0.93904 0.90162 0.94471 0.92604 0.92340 0.94235 0.91746 0.92135 0.96137 0.89758 0.93818 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.67 11.70 55.43 0.65 -22.02 16 2 C 0.08 2.19 4.43 -17.82 -0.08 2.11 16 3 Si 0.86 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -13.30 4.94 -34.44 -0.17 -13.47 16 8 H 0.06 1.56 4.28 -52.49 -0.22 1.33 16 9 C 0.26 5.84 0.68 -131.37 -0.09 5.75 16 10 N -0.79 -18.31 6.75 0.93 0.01 -18.30 16 11 C -0.20 -4.05 5.13 -26.18 -0.13 -4.19 16 12 C 0.09 1.80 5.50 -5.83 -0.03 1.77 16 13 N -0.57 -10.87 4.36 -240.85 -1.05 -11.92 16 14 C 0.08 1.34 5.47 -4.06 -0.02 1.32 16 15 C -0.16 -2.93 5.24 -27.24 -0.14 -3.07 16 16 C -0.07 -1.45 2.68 -90.92 -0.24 -1.69 16 17 C -0.11 -2.45 4.89 -27.40 -0.13 -2.58 16 18 C 0.09 1.86 5.43 -5.79 -0.03 1.83 16 19 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 20 H 0.32 7.51 9.02 -39.30 -0.35 7.15 16 21 H 0.29 6.10 8.99 -39.29 -0.35 5.75 16 22 H 0.06 1.12 4.43 -51.92 -0.23 0.89 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.08 1.71 5.24 -51.93 -0.27 1.44 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.96 8.09 -51.92 -0.42 0.54 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.18 5.40 -51.93 -0.28 0.90 16 30 H 0.06 1.49 7.91 -51.93 -0.41 1.08 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 2.08 6.14 -51.93 -0.32 1.76 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.50 6.40 -51.93 -0.33 1.17 16 LS Contribution 241.11 15.07 3.63 3.63 Total: -1.00 -26.56 241.11 -7.73 -34.29 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -4.87 Total: 11.05 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.08 Total: -12.24 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.39 Total: -52.25 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.56 -7.73 -34.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.554 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds