Wall clock time and date at job start Mon Mar 30 2020 02:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86790 * 120.00340 * 2 1 4 4 H 1.48504 * 109.47507 * 270.00123 * 3 2 1 5 5 H 1.48501 * 109.47162 * 29.99724 * 3 2 1 6 6 H 1.48497 * 109.47626 * 149.99871 * 3 2 1 7 7 C 1.37881 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00227 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46898 * 110.01721 * 36.66045 * 9 7 2 11 11 C 1.54973 * 110.03251 * 158.16327 * 9 7 2 12 12 C 1.52044 * 106.91954 * 45.54272 * 11 9 7 13 13 N 1.44049 * 112.24079 * 60.68296 * 12 11 9 14 14 C 1.46948 * 113.07139 * 42.63607 * 13 12 11 15 15 C 1.52492 * 110.17213 * 293.36451 * 14 13 12 16 16 C 1.52515 * 111.22158 * 336.85038 * 15 14 13 17 17 C 1.52221 * 111.45674 * 324.10686 * 16 15 14 18 18 C 1.43719 * 117.82419 * 270.11804 * 13 12 11 19 19 H 0.97003 * 119.99391 * 0.02562 * 1 2 3 20 20 H 1.00893 * 111.00084 * 58.60608 * 10 9 7 21 21 H 1.00904 * 111.00231 * 182.56400 * 10 9 7 22 22 H 1.09007 * 109.96143 * 164.89280 * 11 9 7 23 23 H 1.08999 * 109.96148 * 286.09876 * 11 9 7 24 24 H 1.09003 * 108.93255 * 299.97321 * 12 11 9 25 25 H 1.09000 * 108.92907 * 181.39206 * 12 11 9 26 26 H 1.09000 * 109.35311 * 53.58286 * 14 13 12 27 27 H 1.09007 * 109.35431 * 173.14960 * 14 13 12 28 28 H 1.09002 * 109.12881 * 216.39698 * 15 14 13 29 29 H 1.09004 * 109.13066 * 97.29546 * 15 14 13 30 30 H 1.08997 * 108.90726 * 203.91998 * 16 15 14 31 31 H 1.09004 * 109.02018 * 296.27918 * 17 16 15 32 32 H 1.08999 * 109.01930 * 177.45865 * 17 16 15 33 33 H 1.08997 * 109.03299 * 206.46456 * 18 13 12 34 34 H 1.09006 * 109.03530 * 325.32184 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 0.0410 -2.3804 -0.8262 11 6 2.1561 -3.6344 -0.5437 12 6 3.5078 -3.4853 0.1363 13 7 3.4142 -3.6077 1.5685 14 6 2.5290 -4.6998 1.9964 15 6 1.0867 -4.3896 1.6106 16 6 0.8725 -2.8898 1.4354 17 6 1.6953 -2.0893 2.4350 18 6 3.1819 -2.4113 2.3303 19 1 -0.4849 0.8401 -0.0004 20 1 0.2730 -2.1241 -1.7740 21 1 -0.4971 -3.2337 -0.8037 22 1 1.7222 -4.6044 -0.3006 23 1 2.2684 -3.5373 -1.6235 24 1 3.9209 -2.5067 -0.1086 25 1 4.1804 -4.2556 -0.2411 26 1 2.8404 -5.6269 1.5150 27 1 2.5965 -4.8167 3.0781 28 1 0.4211 -4.7567 2.3919 29 1 0.8505 -4.8959 0.6746 30 1 -0.1832 -2.6639 1.5854 31 1 1.3520 -2.3202 3.4435 32 1 1.5479 -1.0260 2.2458 33 1 3.5884 -2.5438 3.3329 34 1 3.6930 -1.5780 1.8481 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261269203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:19 Heat of formation + Delta-G solvation = 21.692575 kcal Electronic energy + Delta-G solvation = -15711.995875 eV Core-core repulsion = 13451.935089 eV Total energy + Delta-G solvation = -2260.060786 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.77712 -36.10579 -33.75692 -33.47218 -31.83579 -30.31782 -27.05533 -25.37223 -24.18767 -23.66816 -20.73436 -18.88368 -18.18075 -17.18407 -16.63105 -16.33306 -15.81739 -15.35599 -14.62391 -14.13898 -14.02602 -13.71826 -13.38706 -13.32627 -12.91504 -12.87295 -12.64166 -12.40099 -11.93698 -11.73672 -11.28680 -11.21437 -10.92109 -10.70045 -10.34261 -10.28944 -8.83040 -8.48309 -7.63913 -5.90505 1.40044 1.45945 1.50132 2.52971 3.35180 3.42605 4.02871 4.07389 4.29645 4.47505 4.52891 4.61816 4.68136 4.70065 4.73317 4.81361 5.05294 5.07495 5.15412 5.18919 5.32493 5.35187 5.44390 5.50599 5.72916 5.79815 5.97166 6.02101 6.48163 6.60621 6.78670 6.80524 7.29904 7.53861 7.73743 9.21548 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037077 B = 0.015424 C = 0.013859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.000964 B = 1814.932324 C = 2019.829379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.245 3.755 10 N -0.801 5.801 11 C -0.191 4.191 12 C 0.093 3.907 13 N -0.565 5.565 14 C 0.077 3.923 15 C -0.151 4.151 16 C -0.064 4.064 17 C -0.111 4.111 18 C 0.099 3.901 19 H 0.239 0.761 20 H 0.316 0.684 21 H 0.299 0.701 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -8.033 2.505 9.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.160 4.160 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.153 3.847 10 N -0.326 5.326 11 C -0.232 4.232 12 C -0.035 4.035 13 N -0.287 5.287 14 C -0.051 4.051 15 C -0.190 4.190 16 C -0.084 4.084 17 C -0.151 4.151 18 C -0.029 4.029 19 H 0.049 0.951 20 H 0.127 0.873 21 H 0.110 0.890 22 H 0.094 0.906 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.254 -7.398 3.118 9.086 hybrid contribution -0.303 0.935 -0.985 1.391 sum 3.951 -6.464 2.133 7.870 Atomic orbital electron populations 1.70475 1.06000 1.23967 1.48204 1.25449 0.95015 1.00016 0.95501 0.86354 0.79437 0.82951 0.77490 1.21263 1.22220 1.19628 1.21215 0.92053 0.90672 1.52111 0.92544 1.19003 0.85562 0.91125 0.88987 1.58771 1.23835 1.35721 1.14296 1.23691 0.99624 1.01094 0.98819 1.21059 0.95722 1.00925 0.85830 1.57754 1.55064 1.08626 1.07212 1.21781 0.89115 0.93660 1.00504 1.22340 0.98932 0.96594 1.01111 1.20871 0.97162 0.92981 0.97384 1.21482 0.96933 1.00709 0.95958 1.21021 0.94217 0.90925 0.96777 0.95093 0.87261 0.89006 0.90580 0.94271 0.92365 0.92052 0.90263 0.90693 0.92800 0.91264 0.95699 0.94859 0.93466 0.91391 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.97 11.70 21.45 0.25 -47.72 16 2 C 0.04 2.33 4.43 84.65 0.37 2.71 16 3 Si 0.91 42.93 29.54 68.60 2.03 44.95 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.52 -26.26 4.94 25.60 0.13 -26.14 16 8 H 0.06 2.88 4.28 -2.91 -0.01 2.86 16 9 C 0.25 11.01 0.68 3.68 0.00 11.02 16 10 N -0.80 -37.24 6.75 -150.97 -1.02 -38.26 16 11 C -0.19 -7.32 5.13 30.95 0.16 -7.16 16 12 C 0.09 3.41 5.50 86.52 0.48 3.88 16 13 N -0.57 -19.88 4.36 -915.91 -3.99 -23.87 16 14 C 0.08 2.35 5.47 86.13 0.47 2.82 16 15 C -0.15 -5.14 5.24 30.26 0.16 -4.98 16 16 C -0.06 -2.74 2.68 -10.99 -0.03 -2.77 16 17 C -0.11 -4.74 4.89 30.16 0.15 -4.59 16 18 C 0.10 3.76 5.43 86.72 0.47 4.23 16 19 H 0.24 13.37 8.31 -92.71 -0.77 12.60 16 20 H 0.32 14.88 9.02 -89.70 -0.81 14.07 16 21 H 0.30 12.55 8.99 -89.69 -0.81 11.74 16 22 H 0.08 2.66 4.43 -2.38 -0.01 2.65 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 2.40 5.24 -2.39 -0.01 2.39 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 2.09 8.09 -2.38 -0.02 2.07 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.07 2.29 5.40 -2.39 -0.01 2.28 16 30 H 0.02 1.22 7.91 -2.39 -0.02 1.20 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.05 2.35 6.14 -2.39 -0.01 2.33 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 2.09 6.40 -2.38 -0.02 2.07 16 Total: -1.00 -56.05 241.11 -0.87 -56.92 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.50 Total: 28.95 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 2.36 Total: -20.97 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.76 Total: -109.85 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -56.05 -0.87 -56.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.611 kcal (2) G-P(sol) polarization free energy of solvation -56.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds